Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5601 and Pf1N1B4_5602 are separated by 117 nucleotides Pf1N1B4_5602 and Pf1N1B4_5603 are separated by 385 nucleotides
Pf1N1B4_5601 - FIG00966546: hypothetical protein, at 23,629 to 24,966
_5601
Pf1N1B4_5602 - 6-aminohexanoate-dimer hydrolase (EC 3.5.1.46), at 25,084 to 26,346
_5602
Pf1N1B4_5603 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 26,732 to 27,931
_5603
Position (kb) 25
26
27 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 24.128 kb on + strand, within Pf1N1B4_5601 at 24.227 kb on + strand, within Pf1N1B4_5601 at 24.227 kb on + strand, within Pf1N1B4_5601 at 24.228 kb on - strand, within Pf1N1B4_5601 at 24.333 kb on - strand, within Pf1N1B4_5601 at 24.533 kb on + strand, within Pf1N1B4_5601 at 24.533 kb on + strand, within Pf1N1B4_5601 at 24.534 kb on - strand, within Pf1N1B4_5601 at 24.584 kb on + strand, within Pf1N1B4_5601 at 24.585 kb on - strand, within Pf1N1B4_5601 at 24.737 kb on + strand, within Pf1N1B4_5601 at 24.737 kb on + strand at 24.738 kb on - strand, within Pf1N1B4_5601 at 24.738 kb on - strand, within Pf1N1B4_5601 at 24.738 kb on - strand, within Pf1N1B4_5601 at 24.966 kb on + strand at 25.073 kb on + strand at 25.093 kb on - strand at 25.265 kb on + strand, within Pf1N1B4_5602 at 25.266 kb on - strand, within Pf1N1B4_5602 at 25.326 kb on - strand, within Pf1N1B4_5602 at 25.613 kb on + strand, within Pf1N1B4_5602 at 25.614 kb on - strand, within Pf1N1B4_5602 at 25.661 kb on + strand, within Pf1N1B4_5602 at 25.667 kb on + strand, within Pf1N1B4_5602 at 25.688 kb on + strand, within Pf1N1B4_5602 at 25.689 kb on - strand, within Pf1N1B4_5602 at 25.758 kb on - strand, within Pf1N1B4_5602 at 25.770 kb on - strand, within Pf1N1B4_5602 at 25.848 kb on - strand, within Pf1N1B4_5602 at 25.848 kb on - strand, within Pf1N1B4_5602 at 25.941 kb on + strand, within Pf1N1B4_5602 at 26.536 kb on + strand at 26.560 kb on - strand at 26.667 kb on - strand at 26.689 kb on + strand at 26.689 kb on + strand at 26.689 kb on + strand at 26.757 kb on - strand at 26.887 kb on + strand, within Pf1N1B4_5603 at 26.892 kb on + strand, within Pf1N1B4_5603 at 26.892 kb on + strand, within Pf1N1B4_5603 at 26.892 kb on + strand at 26.955 kb on + strand, within Pf1N1B4_5603 at 26.955 kb on + strand, within Pf1N1B4_5603 at 27.101 kb on + strand, within Pf1N1B4_5603 at 27.107 kb on + strand at 27.107 kb on + strand, within Pf1N1B4_5603 at 27.146 kb on + strand, within Pf1N1B4_5603 at 27.147 kb on - strand, within Pf1N1B4_5603 at 27.150 kb on + strand, within Pf1N1B4_5603 at 27.151 kb on - strand, within Pf1N1B4_5603 at 27.302 kb on + strand, within Pf1N1B4_5603 at 27.302 kb on + strand at 27.302 kb on + strand, within Pf1N1B4_5603 at 27.303 kb on - strand, within Pf1N1B4_5603 at 27.303 kb on - strand, within Pf1N1B4_5603 at 27.303 kb on - strand, within Pf1N1B4_5603 at 27.303 kb on - strand, within Pf1N1B4_5603
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 24,128 + Pf1N1B4_5601 0.37 -0.1 24,227 + Pf1N1B4_5601 0.45 -0.9 24,227 + Pf1N1B4_5601 0.45 +1.4 24,228 - Pf1N1B4_5601 0.45 -0.5 24,333 - Pf1N1B4_5601 0.53 +1.1 24,533 + Pf1N1B4_5601 0.68 -0.3 24,533 + Pf1N1B4_5601 0.68 +0.3 24,534 - Pf1N1B4_5601 0.68 -1.5 24,584 + Pf1N1B4_5601 0.71 -0.9 24,585 - Pf1N1B4_5601 0.71 +2.1 24,737 + Pf1N1B4_5601 0.83 +2.1 24,737 + -1.0 24,738 - Pf1N1B4_5601 0.83 -1.0 24,738 - Pf1N1B4_5601 0.83 +0.1 24,738 - Pf1N1B4_5601 0.83 +0.5 24,966 + -0.1 25,073 + +1.4 25,093 - -0.2 25,265 + Pf1N1B4_5602 0.14 -0.6 25,266 - Pf1N1B4_5602 0.14 -0.1 25,326 - Pf1N1B4_5602 0.19 -0.9 25,613 + Pf1N1B4_5602 0.42 +0.3 25,614 - Pf1N1B4_5602 0.42 -1.5 25,661 + Pf1N1B4_5602 0.46 +0.1 25,667 + Pf1N1B4_5602 0.46 -1.3 25,688 + Pf1N1B4_5602 0.48 +0.9 25,689 - Pf1N1B4_5602 0.48 -1.5 25,758 - Pf1N1B4_5602 0.53 -1.7 25,770 - Pf1N1B4_5602 0.54 -0.5 25,848 - Pf1N1B4_5602 0.60 -0.5 25,848 - Pf1N1B4_5602 0.60 -1.5 25,941 + Pf1N1B4_5602 0.68 -1.5 26,536 + -1.5 26,560 - -1.5 26,667 - -0.7 26,689 + +0.2 26,689 + +1.4 26,689 + +0.5 26,757 - -0.2 26,887 + Pf1N1B4_5603 0.13 +0.7 26,892 + Pf1N1B4_5603 0.13 -0.0 26,892 + Pf1N1B4_5603 0.13 -0.2 26,892 + +1.9 26,955 + Pf1N1B4_5603 0.19 -0.5 26,955 + Pf1N1B4_5603 0.19 +0.0 27,101 + Pf1N1B4_5603 0.31 +0.5 27,107 + -2.0 27,107 + Pf1N1B4_5603 0.31 -0.9 27,146 + Pf1N1B4_5603 0.34 -0.8 27,147 - Pf1N1B4_5603 0.35 +0.9 27,150 + Pf1N1B4_5603 0.35 +0.2 27,151 - Pf1N1B4_5603 0.35 -1.0 27,302 + Pf1N1B4_5603 0.47 -1.0 27,302 + -0.5 27,302 + Pf1N1B4_5603 0.47 -0.5 27,303 - Pf1N1B4_5603 0.48 -0.0 27,303 - Pf1N1B4_5603 0.48 -2.8 27,303 - Pf1N1B4_5603 0.48 +0.5 27,303 - Pf1N1B4_5603 0.48 -2.0
Or see this region's nucleotide sequence