Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5575

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5574 and Pf1N1B4_5575 are separated by 749 nucleotidesPf1N1B4_5575 and Pf1N1B4_5576 are separated by 838 nucleotides Pf1N1B4_5574 - hypothetical protein, at 344,298 to 344,504 _5574 Pf1N1B4_5575 - hypothetical protein, at 345,254 to 345,634 _5575 Pf1N1B4_5576 - hypothetical protein, at 346,473 to 346,823 _5576 Position (kb) 345 346Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 344.362 kb on - strand, within Pf1N1B4_5574at 344.362 kb on - strand, within Pf1N1B4_5574at 344.388 kb on - strand, within Pf1N1B4_5574at 344.674 kb on + strandat 344.675 kb on - strandat 344.675 kb on - strandat 344.675 kb on - strandat 344.675 kb on - strandat 344.675 kb on - strandat 344.779 kb on - strandat 344.885 kb on + strandat 344.885 kb on + strandat 344.886 kb on - strandat 344.886 kb on - strandat 344.995 kb on - strandat 345.001 kb on + strandat 345.002 kb on - strandat 345.004 kb on + strandat 345.005 kb on - strandat 345.005 kb on - strandat 345.016 kb on - strandat 345.020 kb on - strandat 345.020 kb on - strandat 345.053 kb on - strandat 345.093 kb on + strandat 345.178 kb on - strandat 345.255 kb on + strandat 345.343 kb on - strand, within Pf1N1B4_5575at 345.378 kb on - strandat 345.380 kb on + strand, within Pf1N1B4_5575at 345.380 kb on + strand, within Pf1N1B4_5575at 345.416 kb on - strandat 345.536 kb on + strand, within Pf1N1B4_5575at 345.536 kb on + strand, within Pf1N1B4_5575at 345.537 kb on - strand, within Pf1N1B4_5575at 345.554 kb on - strand, within Pf1N1B4_5575at 345.679 kb on + strandat 345.680 kb on - strandat 345.680 kb on - strandat 345.680 kb on - strandat 345.699 kb on - strandat 345.805 kb on - strandat 345.875 kb on + strandat 345.876 kb on - strandat 345.887 kb on + strandat 345.888 kb on - strandat 345.888 kb on - strandat 345.952 kb on + strandat 345.952 kb on + strandat 345.952 kb on + strandat 345.952 kb on + strandat 345.952 kb on + strandat 345.953 kb on - strandat 345.953 kb on - strandat 345.953 kb on - strandat 345.953 kb on - strandat 345.953 kb on - strandat 345.953 kb on - strandat 345.953 kb on - strandat 345.953 kb on - strandat 345.956 kb on + strandat 345.956 kb on + strandat 345.956 kb on + strandat 345.956 kb on + strandat 345.957 kb on - strandat 345.957 kb on - strandat 345.963 kb on + strandat 345.963 kb on + strandat 345.963 kb on + strandat 345.964 kb on - strandat 345.964 kb on - strandat 346.013 kb on + strandat 346.013 kb on + strandat 346.013 kb on + strandat 346.019 kb on + strandat 346.019 kb on + strandat 346.019 kb on + strandat 346.020 kb on - strandat 346.020 kb on - strandat 346.020 kb on - strandat 346.020 kb on - strandat 346.021 kb on + strandat 346.022 kb on - strandat 346.058 kb on + strandat 346.059 kb on - strandat 346.059 kb on - strandat 346.060 kb on + strandat 346.060 kb on + strandat 346.060 kb on + strandat 346.060 kb on + strandat 346.060 kb on + strandat 346.060 kb on + strandat 346.061 kb on - strandat 346.061 kb on - strandat 346.061 kb on - strandat 346.061 kb on - strandat 346.061 kb on - strandat 346.061 kb on - strandat 346.061 kb on - strandat 346.061 kb on - strandat 346.061 kb on - strandat 346.061 kb on - strandat 346.061 kb on - strandat 346.061 kb on - strandat 346.061 kb on - strandat 346.162 kb on + strandat 346.162 kb on + strandat 346.163 kb on - strandat 346.171 kb on + strandat 346.171 kb on + strandat 346.171 kb on + strandat 346.172 kb on - strandat 346.202 kb on + strandat 346.231 kb on + strandat 346.257 kb on - strandat 346.351 kb on - strandat 346.351 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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344,362 - Pf1N1B4_5574 0.31 -1.4
344,362 - Pf1N1B4_5574 0.31 +0.6
344,388 - Pf1N1B4_5574 0.43 +1.0
344,674 + -2.1
344,675 - +0.2
344,675 - +0.9
344,675 - -0.1
344,675 - +0.6
344,675 - +0.7
344,779 - +0.2
344,885 + -0.8
344,885 + +1.2
344,886 - +2.6
344,886 - +0.2
344,995 - -0.2
345,001 + +1.2
345,002 - +1.6
345,004 + -1.4
345,005 - -1.4
345,005 - +0.4
345,016 - -0.4
345,020 - -1.1
345,020 - -0.0
345,053 - -0.1
345,093 + -0.4
345,178 - -2.8
345,255 + +1.2
345,343 - Pf1N1B4_5575 0.23 -0.3
345,378 - -1.8
345,380 + Pf1N1B4_5575 0.33 -2.4
345,380 + Pf1N1B4_5575 0.33 -0.4
345,416 - +2.3
345,536 + Pf1N1B4_5575 0.74 -0.2
345,536 + Pf1N1B4_5575 0.74 -2.8
345,537 - Pf1N1B4_5575 0.74 +0.2
345,554 - Pf1N1B4_5575 0.79 +0.2
345,679 + -0.7
345,680 - +1.2
345,680 - +1.8
345,680 - -1.4
345,699 - +1.4
345,805 - -0.1
345,875 + -0.6
345,876 - -1.4
345,887 + +0.8
345,888 - -1.0
345,888 - +0.2
345,952 + +2.2
345,952 + -0.1
345,952 + -0.2
345,952 + -0.8
345,952 + +0.9
345,953 - +0.0
345,953 - -1.4
345,953 - -0.7
345,953 - -0.5
345,953 - -1.2
345,953 - +0.2
345,953 - +0.2
345,953 - +0.9
345,956 + -0.9
345,956 + +0.6
345,956 + +0.2
345,956 + -1.1
345,957 - +0.3
345,957 - -1.6
345,963 + +1.2
345,963 + -0.8
345,963 + -0.6
345,964 - +0.2
345,964 - -1.4
346,013 + +0.4
346,013 + -0.5
346,013 + +0.6
346,019 + -1.1
346,019 + +0.2
346,019 + +0.2
346,020 - +1.2
346,020 - -1.3
346,020 - -1.0
346,020 - -1.6
346,021 + +2.5
346,022 - -0.0
346,058 + -0.8
346,059 - +0.2
346,059 - -1.0
346,060 + +0.5
346,060 + -0.0
346,060 + -0.3
346,060 + +1.0
346,060 + +1.2
346,060 + -0.2
346,061 - +0.5
346,061 - -0.8
346,061 - +0.2
346,061 - +0.2
346,061 - -0.4
346,061 - -1.4
346,061 - -0.8
346,061 - +0.2
346,061 - +0.4
346,061 - -0.4
346,061 - +0.4
346,061 - -1.8
346,061 - +0.2
346,162 + +0.6
346,162 + +1.2
346,163 - -0.2
346,171 + +1.0
346,171 + -1.0
346,171 + +0.4
346,172 - -0.3
346,202 + -1.9
346,231 + +2.2
346,257 - +0.6
346,351 - +0.2
346,351 - -0.8

Or see this region's nucleotide sequence