Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5574 and Pf1N1B4_5575 are separated by 749 nucleotides Pf1N1B4_5575 and Pf1N1B4_5576 are separated by 838 nucleotides
Pf1N1B4_5574 - hypothetical protein, at 344,298 to 344,504
_5574
Pf1N1B4_5575 - hypothetical protein, at 345,254 to 345,634
_5575
Pf1N1B4_5576 - hypothetical protein, at 346,473 to 346,823
_5576
Position (kb)
345
346 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 344.362 kb on - strand, within Pf1N1B4_5574 at 344.362 kb on - strand, within Pf1N1B4_5574 at 344.388 kb on - strand, within Pf1N1B4_5574 at 344.674 kb on + strand at 344.675 kb on - strand at 344.675 kb on - strand at 344.675 kb on - strand at 344.675 kb on - strand at 344.675 kb on - strand at 344.779 kb on - strand at 344.885 kb on + strand at 344.885 kb on + strand at 344.886 kb on - strand at 344.886 kb on - strand at 344.995 kb on - strand at 345.001 kb on + strand at 345.002 kb on - strand at 345.004 kb on + strand at 345.005 kb on - strand at 345.005 kb on - strand at 345.016 kb on - strand at 345.020 kb on - strand at 345.020 kb on - strand at 345.053 kb on - strand at 345.093 kb on + strand at 345.178 kb on - strand at 345.255 kb on + strand at 345.343 kb on - strand, within Pf1N1B4_5575 at 345.378 kb on - strand at 345.380 kb on + strand, within Pf1N1B4_5575 at 345.380 kb on + strand, within Pf1N1B4_5575 at 345.416 kb on - strand at 345.536 kb on + strand, within Pf1N1B4_5575 at 345.536 kb on + strand, within Pf1N1B4_5575 at 345.537 kb on - strand, within Pf1N1B4_5575 at 345.554 kb on - strand, within Pf1N1B4_5575 at 345.679 kb on + strand at 345.680 kb on - strand at 345.680 kb on - strand at 345.680 kb on - strand at 345.699 kb on - strand at 345.805 kb on - strand at 345.875 kb on + strand at 345.876 kb on - strand at 345.887 kb on + strand at 345.888 kb on - strand at 345.888 kb on - strand at 345.952 kb on + strand at 345.952 kb on + strand at 345.952 kb on + strand at 345.952 kb on + strand at 345.952 kb on + strand at 345.953 kb on - strand at 345.953 kb on - strand at 345.953 kb on - strand at 345.953 kb on - strand at 345.953 kb on - strand at 345.953 kb on - strand at 345.953 kb on - strand at 345.953 kb on - strand at 345.956 kb on + strand at 345.956 kb on + strand at 345.956 kb on + strand at 345.956 kb on + strand at 345.957 kb on - strand at 345.957 kb on - strand at 345.963 kb on + strand at 345.963 kb on + strand at 345.963 kb on + strand at 345.964 kb on - strand at 345.964 kb on - strand at 346.013 kb on + strand at 346.013 kb on + strand at 346.013 kb on + strand at 346.019 kb on + strand at 346.019 kb on + strand at 346.019 kb on + strand at 346.020 kb on - strand at 346.020 kb on - strand at 346.020 kb on - strand at 346.020 kb on - strand at 346.021 kb on + strand at 346.022 kb on - strand at 346.058 kb on + strand at 346.059 kb on - strand at 346.059 kb on - strand at 346.060 kb on + strand at 346.060 kb on + strand at 346.060 kb on + strand at 346.060 kb on + strand at 346.060 kb on + strand at 346.060 kb on + strand at 346.061 kb on - strand at 346.061 kb on - strand at 346.061 kb on - strand at 346.061 kb on - strand at 346.061 kb on - strand at 346.061 kb on - strand at 346.061 kb on - strand at 346.061 kb on - strand at 346.061 kb on - strand at 346.061 kb on - strand at 346.061 kb on - strand at 346.061 kb on - strand at 346.061 kb on - strand at 346.162 kb on + strand at 346.162 kb on + strand at 346.163 kb on - strand at 346.171 kb on + strand at 346.171 kb on + strand at 346.171 kb on + strand at 346.172 kb on - strand at 346.202 kb on + strand at 346.231 kb on + strand at 346.257 kb on - strand at 346.351 kb on - strand at 346.351 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 344,362 - Pf1N1B4_5574 0.31 -1.4 344,362 - Pf1N1B4_5574 0.31 +0.6 344,388 - Pf1N1B4_5574 0.43 +1.0 344,674 + -2.1 344,675 - +0.2 344,675 - +0.9 344,675 - -0.1 344,675 - +0.6 344,675 - +0.7 344,779 - +0.2 344,885 + -0.8 344,885 + +1.2 344,886 - +2.6 344,886 - +0.2 344,995 - -0.2 345,001 + +1.2 345,002 - +1.6 345,004 + -1.4 345,005 - -1.4 345,005 - +0.4 345,016 - -0.4 345,020 - -1.1 345,020 - -0.0 345,053 - -0.1 345,093 + -0.4 345,178 - -2.8 345,255 + +1.2 345,343 - Pf1N1B4_5575 0.23 -0.3 345,378 - -1.8 345,380 + Pf1N1B4_5575 0.33 -2.4 345,380 + Pf1N1B4_5575 0.33 -0.4 345,416 - +2.3 345,536 + Pf1N1B4_5575 0.74 -0.2 345,536 + Pf1N1B4_5575 0.74 -2.8 345,537 - Pf1N1B4_5575 0.74 +0.2 345,554 - Pf1N1B4_5575 0.79 +0.2 345,679 + -0.7 345,680 - +1.2 345,680 - +1.8 345,680 - -1.4 345,699 - +1.4 345,805 - -0.1 345,875 + -0.6 345,876 - -1.4 345,887 + +0.8 345,888 - -1.0 345,888 - +0.2 345,952 + +2.2 345,952 + -0.1 345,952 + -0.2 345,952 + -0.8 345,952 + +0.9 345,953 - +0.0 345,953 - -1.4 345,953 - -0.7 345,953 - -0.5 345,953 - -1.2 345,953 - +0.2 345,953 - +0.2 345,953 - +0.9 345,956 + -0.9 345,956 + +0.6 345,956 + +0.2 345,956 + -1.1 345,957 - +0.3 345,957 - -1.6 345,963 + +1.2 345,963 + -0.8 345,963 + -0.6 345,964 - +0.2 345,964 - -1.4 346,013 + +0.4 346,013 + -0.5 346,013 + +0.6 346,019 + -1.1 346,019 + +0.2 346,019 + +0.2 346,020 - +1.2 346,020 - -1.3 346,020 - -1.0 346,020 - -1.6 346,021 + +2.5 346,022 - -0.0 346,058 + -0.8 346,059 - +0.2 346,059 - -1.0 346,060 + +0.5 346,060 + -0.0 346,060 + -0.3 346,060 + +1.0 346,060 + +1.2 346,060 + -0.2 346,061 - +0.5 346,061 - -0.8 346,061 - +0.2 346,061 - +0.2 346,061 - -0.4 346,061 - -1.4 346,061 - -0.8 346,061 - +0.2 346,061 - +0.4 346,061 - -0.4 346,061 - +0.4 346,061 - -1.8 346,061 - +0.2 346,162 + +0.6 346,162 + +1.2 346,163 - -0.2 346,171 + +1.0 346,171 + -1.0 346,171 + +0.4 346,172 - -0.3 346,202 + -1.9 346,231 + +2.2 346,257 - +0.6 346,351 - +0.2 346,351 - -0.8
Or see this region's nucleotide sequence