Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_538

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_537 and Pf1N1B4_538 are separated by 76 nucleotidesPf1N1B4_538 and Pf1N1B4_539 are separated by 120 nucleotidesPf1N1B4_539 and Pf1N1B4_540 are separated by 201 nucleotides Pf1N1B4_537 - FIG00959721: hypothetical protein, at 635,559 to 636,275 _537 Pf1N1B4_538 - hypothetical protein, at 636,352 to 637,221 _538 Pf1N1B4_539 - Transcriptional regulators, at 637,342 to 637,734 _539 Pf1N1B4_540 - FIG00960825: hypothetical protein, at 637,936 to 638,670 _540 Position (kb) 636 637 638Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 635.361 kb on + strandat 635.500 kb on + strandat 635.500 kb on + strandat 635.518 kb on - strandat 635.760 kb on + strandat 635.760 kb on + strand, within Pf1N1B4_537at 635.760 kb on + strand, within Pf1N1B4_537at 635.761 kb on - strand, within Pf1N1B4_537at 635.761 kb on - strand, within Pf1N1B4_537at 635.761 kb on - strand, within Pf1N1B4_537at 635.761 kb on - strand, within Pf1N1B4_537at 635.761 kb on - strand, within Pf1N1B4_537at 635.761 kb on - strand, within Pf1N1B4_537at 635.761 kb on - strand, within Pf1N1B4_537at 635.761 kb on - strand, within Pf1N1B4_537at 635.761 kb on - strand, within Pf1N1B4_537at 635.761 kb on - strand, within Pf1N1B4_537at 635.761 kb on - strand, within Pf1N1B4_537at 635.761 kb on - strand, within Pf1N1B4_537at 635.761 kb on - strand, within Pf1N1B4_537at 635.823 kb on + strand, within Pf1N1B4_537at 635.823 kb on + strand, within Pf1N1B4_537at 635.824 kb on - strand, within Pf1N1B4_537at 635.824 kb on - strand, within Pf1N1B4_537at 635.824 kb on - strand, within Pf1N1B4_537at 635.834 kb on + strand, within Pf1N1B4_537at 636.054 kb on + strand, within Pf1N1B4_537at 636.054 kb on + strand, within Pf1N1B4_537at 636.054 kb on + strand, within Pf1N1B4_537at 636.055 kb on - strand, within Pf1N1B4_537at 636.099 kb on + strand, within Pf1N1B4_537at 636.099 kb on + strand, within Pf1N1B4_537at 636.100 kb on - strand, within Pf1N1B4_537at 636.100 kb on - strand, within Pf1N1B4_537at 636.114 kb on - strand, within Pf1N1B4_537at 636.171 kb on + strand, within Pf1N1B4_537at 636.171 kb on + strand, within Pf1N1B4_537at 636.172 kb on - strand, within Pf1N1B4_537at 636.210 kb on + strandat 636.224 kb on + strandat 636.224 kb on + strandat 636.270 kb on + strandat 636.270 kb on + strandat 636.271 kb on - strandat 636.271 kb on - strandat 636.271 kb on - strandat 636.271 kb on - strandat 636.271 kb on - strandat 636.273 kb on + strandat 636.273 kb on + strandat 636.475 kb on + strand, within Pf1N1B4_538at 636.476 kb on - strand, within Pf1N1B4_538at 636.699 kb on - strandat 636.784 kb on + strand, within Pf1N1B4_538at 637.219 kb on + strandat 637.219 kb on + strandat 637.219 kb on + strandat 637.219 kb on + strandat 637.219 kb on + strandat 637.220 kb on - strandat 637.226 kb on + strandat 637.232 kb on + strandat 637.233 kb on - strandat 637.233 kb on - strandat 637.494 kb on - strand, within Pf1N1B4_539at 637.539 kb on - strand, within Pf1N1B4_539at 637.638 kb on - strandat 637.649 kb on + strand, within Pf1N1B4_539at 637.649 kb on + strand, within Pf1N1B4_539at 637.650 kb on - strand, within Pf1N1B4_539at 637.723 kb on - strandat 637.723 kb on - strandat 637.723 kb on - strandat 637.724 kb on + strandat 637.724 kb on + strandat 637.724 kb on + strandat 637.724 kb on + strandat 637.724 kb on + strandat 637.725 kb on - strandat 637.725 kb on - strandat 637.725 kb on - strandat 637.725 kb on - strandat 637.725 kb on - strandat 637.725 kb on - strandat 637.725 kb on - strandat 637.725 kb on - strandat 637.725 kb on - strandat 637.775 kb on + strandat 637.775 kb on + strandat 637.775 kb on + strandat 637.775 kb on + strandat 637.776 kb on - strandat 637.776 kb on - strandat 637.776 kb on - strandat 637.776 kb on - strandat 637.776 kb on - strandat 637.776 kb on - strandat 637.776 kb on - strandat 637.776 kb on - strandat 637.776 kb on - strandat 637.776 kb on - strandat 637.776 kb on - strandat 637.815 kb on + strandat 637.868 kb on - strandat 637.876 kb on + strandat 637.876 kb on + strandat 637.876 kb on + strandat 637.877 kb on - strandat 637.877 kb on - strandat 637.877 kb on - strandat 637.877 kb on - strandat 637.886 kb on + strandat 638.158 kb on + strand, within Pf1N1B4_540at 638.158 kb on + strand, within Pf1N1B4_540at 638.158 kb on + strand, within Pf1N1B4_540at 638.159 kb on - strand, within Pf1N1B4_540at 638.159 kb on - strandat 638.159 kb on - strand, within Pf1N1B4_540at 638.159 kb on - strandat 638.159 kb on - strand, within Pf1N1B4_540at 638.159 kb on - strand, within Pf1N1B4_540at 638.159 kb on - strand, within Pf1N1B4_540

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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635,361 + -0.0
635,500 + +0.3
635,500 + -2.0
635,518 - +0.1
635,760 + -0.0
635,760 + Pf1N1B4_537 0.28 +0.7
635,760 + Pf1N1B4_537 0.28 -0.8
635,761 - Pf1N1B4_537 0.28 -2.8
635,761 - Pf1N1B4_537 0.28 -0.4
635,761 - Pf1N1B4_537 0.28 +0.5
635,761 - Pf1N1B4_537 0.28 +0.3
635,761 - Pf1N1B4_537 0.28 +1.1
635,761 - Pf1N1B4_537 0.28 -1.0
635,761 - Pf1N1B4_537 0.28 +2.8
635,761 - Pf1N1B4_537 0.28 -0.6
635,761 - Pf1N1B4_537 0.28 -1.4
635,761 - Pf1N1B4_537 0.28 -0.3
635,761 - Pf1N1B4_537 0.28 -1.4
635,761 - Pf1N1B4_537 0.28 -0.0
635,761 - Pf1N1B4_537 0.28 +1.0
635,823 + Pf1N1B4_537 0.37 +0.6
635,823 + Pf1N1B4_537 0.37 +0.1
635,824 - Pf1N1B4_537 0.37 +1.4
635,824 - Pf1N1B4_537 0.37 -0.6
635,824 - Pf1N1B4_537 0.37 -0.0
635,834 + Pf1N1B4_537 0.38 -2.0
636,054 + Pf1N1B4_537 0.69 -1.0
636,054 + Pf1N1B4_537 0.69 +1.6
636,054 + Pf1N1B4_537 0.69 +1.0
636,055 - Pf1N1B4_537 0.69 +0.5
636,099 + Pf1N1B4_537 0.75 +0.4
636,099 + Pf1N1B4_537 0.75 +0.8
636,100 - Pf1N1B4_537 0.75 -2.0
636,100 - Pf1N1B4_537 0.75 +0.4
636,114 - Pf1N1B4_537 0.77 -1.0
636,171 + Pf1N1B4_537 0.85 -1.4
636,171 + Pf1N1B4_537 0.85 +0.7
636,172 - Pf1N1B4_537 0.85 -0.0
636,210 + -2.4
636,224 + -0.0
636,224 + +2.3
636,270 + -2.0
636,270 + -0.1
636,271 - -2.6
636,271 - -0.4
636,271 - +0.6
636,271 - -1.6
636,271 - +1.2
636,273 + -0.0
636,273 + +1.7
636,475 + Pf1N1B4_538 0.14 -2.0
636,476 - Pf1N1B4_538 0.14 -0.0
636,699 - -0.0
636,784 + Pf1N1B4_538 0.50 -0.6
637,219 + -0.6
637,219 + +0.8
637,219 + +0.3
637,219 + -2.0
637,219 + -0.0
637,220 - -0.3
637,226 + -0.0
637,232 + -1.6
637,233 - -1.0
637,233 - +0.7
637,494 - Pf1N1B4_539 0.39 +0.4
637,539 - Pf1N1B4_539 0.50 -1.0
637,638 - +1.3
637,649 + Pf1N1B4_539 0.78 +1.3
637,649 + Pf1N1B4_539 0.78 -0.4
637,650 - Pf1N1B4_539 0.78 +1.8
637,723 - +1.0
637,723 - -1.0
637,723 - +0.6
637,724 + -1.6
637,724 + -1.0
637,724 + -0.0
637,724 + -0.0
637,724 + -1.0
637,725 - -0.0
637,725 - -2.6
637,725 - -0.7
637,725 - +1.3
637,725 - +1.6
637,725 - -2.4
637,725 - +1.6
637,725 - -0.4
637,725 - +1.0
637,775 + +0.2
637,775 + -3.0
637,775 + -2.6
637,775 + -1.4
637,776 - -2.8
637,776 - +0.1
637,776 - -0.0
637,776 - -3.0
637,776 - +1.0
637,776 - -1.2
637,776 - +0.2
637,776 - -0.9
637,776 - -1.0
637,776 - +3.1
637,776 - -0.0
637,815 + -2.6
637,868 - -2.4
637,876 + -1.0
637,876 + -1.8
637,876 + +2.0
637,877 - -0.6
637,877 - +2.0
637,877 - +0.5
637,877 - +0.4
637,886 + +0.6
638,158 + Pf1N1B4_540 0.30 -2.4
638,158 + Pf1N1B4_540 0.30 -0.3
638,158 + Pf1N1B4_540 0.30 +0.2
638,159 - Pf1N1B4_540 0.30 +0.8
638,159 - +1.6
638,159 - Pf1N1B4_540 0.30 -0.6
638,159 - -0.6
638,159 - Pf1N1B4_540 0.30 -1.4
638,159 - Pf1N1B4_540 0.30 -1.4
638,159 - Pf1N1B4_540 0.30 -0.0

Or see this region's nucleotide sequence