Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5308 and Pf1N1B4_5309 are separated by 301 nucleotides Pf1N1B4_5309 and Pf1N1B4_5310 are separated by 48 nucleotides
Pf1N1B4_5308 - hypothetical protein, at 59,903 to 60,145
_5308
Pf1N1B4_5309 - hypothetical protein, at 60,447 to 60,770
_5309
Pf1N1B4_5310 - hypothetical protein, at 60,819 to 61,040
_5310
Position (kb)
60
61 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 59.501 kb on + strand at 59.530 kb on + strand at 59.530 kb on + strand at 59.530 kb on + strand at 59.530 kb on + strand at 59.530 kb on + strand at 59.531 kb on - strand at 59.534 kb on + strand at 59.534 kb on + strand at 59.535 kb on - strand at 59.581 kb on - strand at 59.659 kb on + strand at 59.659 kb on + strand at 59.659 kb on + strand at 59.660 kb on - strand at 59.660 kb on - strand at 59.660 kb on - strand at 59.663 kb on + strand at 59.663 kb on + strand at 59.663 kb on + strand at 59.663 kb on + strand at 59.663 kb on + strand at 59.663 kb on + strand at 59.663 kb on + strand at 59.663 kb on + strand at 59.663 kb on + strand at 59.663 kb on + strand at 59.663 kb on + strand at 59.663 kb on + strand at 59.663 kb on + strand at 59.663 kb on + strand at 59.663 kb on + strand at 59.663 kb on + strand at 59.663 kb on + strand at 59.663 kb on + strand at 59.664 kb on - strand at 59.664 kb on - strand at 59.664 kb on - strand at 59.664 kb on - strand at 59.664 kb on - strand at 59.664 kb on - strand at 59.664 kb on - strand at 59.664 kb on - strand at 59.669 kb on + strand at 59.827 kb on - strand at 59.841 kb on + strand at 59.845 kb on + strand at 59.845 kb on + strand at 59.845 kb on + strand at 59.845 kb on + strand at 59.845 kb on + strand at 59.846 kb on - strand at 59.846 kb on - strand at 59.846 kb on - strand at 60.007 kb on + strand, within Pf1N1B4_5308 at 60.007 kb on + strand, within Pf1N1B4_5308 at 60.007 kb on + strand, within Pf1N1B4_5308 at 60.008 kb on - strand, within Pf1N1B4_5308 at 60.008 kb on - strand, within Pf1N1B4_5308 at 60.008 kb on - strand, within Pf1N1B4_5308 at 60.008 kb on - strand at 60.008 kb on - strand, within Pf1N1B4_5308 at 60.029 kb on + strand at 60.029 kb on + strand at 60.030 kb on - strand, within Pf1N1B4_5308 at 60.030 kb on - strand, within Pf1N1B4_5308 at 60.030 kb on - strand, within Pf1N1B4_5308 at 60.030 kb on - strand, within Pf1N1B4_5308 at 60.030 kb on - strand, within Pf1N1B4_5308 at 60.030 kb on - strand, within Pf1N1B4_5308 at 60.030 kb on - strand, within Pf1N1B4_5308 at 60.030 kb on - strand, within Pf1N1B4_5308 at 60.030 kb on - strand, within Pf1N1B4_5308 at 60.030 kb on - strand at 60.243 kb on + strand at 60.274 kb on + strand at 60.275 kb on - strand at 60.349 kb on + strand at 60.350 kb on - strand at 60.350 kb on - strand at 60.447 kb on - strand at 60.460 kb on + strand at 60.559 kb on - strand, within Pf1N1B4_5309 at 60.559 kb on - strand, within Pf1N1B4_5309 at 60.559 kb on - strand, within Pf1N1B4_5309 at 60.559 kb on - strand, within Pf1N1B4_5309 at 60.869 kb on + strand, within Pf1N1B4_5310 at 60.869 kb on + strand, within Pf1N1B4_5310 at 60.869 kb on + strand at 60.869 kb on + strand, within Pf1N1B4_5310 at 60.870 kb on - strand, within Pf1N1B4_5310 at 60.870 kb on - strand, within Pf1N1B4_5310 at 60.870 kb on - strand, within Pf1N1B4_5310 at 60.870 kb on - strand, within Pf1N1B4_5310 at 60.870 kb on - strand at 60.870 kb on - strand, within Pf1N1B4_5310 at 60.870 kb on - strand, within Pf1N1B4_5310 at 60.870 kb on - strand, within Pf1N1B4_5310 at 60.885 kb on + strand, within Pf1N1B4_5310 at 61.074 kb on + strand at 61.075 kb on - strand at 61.098 kb on - strand at 61.222 kb on - strand at 61.421 kb on - strand at 61.421 kb on - strand at 61.448 kb on - strand at 61.464 kb on + strand at 61.496 kb on + strand at 61.534 kb on + strand at 61.605 kb on - strand at 61.675 kb on + strand at 61.675 kb on + strand at 61.676 kb on - strand at 61.679 kb on + strand at 61.679 kb on + strand at 61.679 kb on + strand at 61.679 kb on + strand at 61.679 kb on + strand at 61.679 kb on + strand at 61.679 kb on + strand at 61.679 kb on + strand at 61.679 kb on + strand at 61.680 kb on - strand at 61.714 kb on + strand at 61.714 kb on + strand at 61.723 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 59,501 + +0.5 59,530 + -0.8 59,530 + -0.1 59,530 + -1.4 59,530 + -1.4 59,530 + -0.1 59,531 - +1.5 59,534 + -2.0 59,534 + +0.2 59,535 - +1.8 59,581 - +0.6 59,659 + -0.4 59,659 + -0.8 59,659 + +0.2 59,660 - +1.5 59,660 - -2.1 59,660 - -0.6 59,663 + +0.4 59,663 + -1.6 59,663 + +3.0 59,663 + +0.2 59,663 + -0.8 59,663 + -0.8 59,663 + -0.1 59,663 + +0.2 59,663 + -0.2 59,663 + -2.1 59,663 + +1.8 59,663 + -0.1 59,663 + -0.2 59,663 + -0.1 59,663 + +1.2 59,663 + +0.2 59,663 + +0.9 59,663 + -0.4 59,664 - -0.8 59,664 - +0.2 59,664 - +0.7 59,664 - +0.7 59,664 - -0.2 59,664 - -0.8 59,664 - +1.3 59,664 - +0.2 59,669 + +1.4 59,827 - +0.6 59,841 + +1.2 59,845 + +1.2 59,845 + +0.2 59,845 + -1.1 59,845 + +1.8 59,845 + +1.1 59,846 - -2.6 59,846 - -0.6 59,846 - -0.1 60,007 + Pf1N1B4_5308 0.43 -0.3 60,007 + Pf1N1B4_5308 0.43 -0.8 60,007 + Pf1N1B4_5308 0.43 +2.5 60,008 - Pf1N1B4_5308 0.43 +0.2 60,008 - Pf1N1B4_5308 0.43 -0.1 60,008 - Pf1N1B4_5308 0.43 +1.6 60,008 - +0.5 60,008 - Pf1N1B4_5308 0.43 +1.3 60,029 + -0.8 60,029 + +1.8 60,030 - Pf1N1B4_5308 0.52 +0.2 60,030 - Pf1N1B4_5308 0.52 -0.8 60,030 - Pf1N1B4_5308 0.52 -0.3 60,030 - Pf1N1B4_5308 0.52 -0.8 60,030 - Pf1N1B4_5308 0.52 +0.5 60,030 - Pf1N1B4_5308 0.52 -1.0 60,030 - Pf1N1B4_5308 0.52 -0.1 60,030 - Pf1N1B4_5308 0.52 -0.4 60,030 - Pf1N1B4_5308 0.52 +0.2 60,030 - +1.2 60,243 + +1.4 60,274 + +0.6 60,275 - +0.4 60,349 + -1.8 60,350 - -0.2 60,350 - +2.0 60,447 - -0.0 60,460 + +0.2 60,559 - Pf1N1B4_5309 0.35 -0.8 60,559 - Pf1N1B4_5309 0.35 -2.1 60,559 - Pf1N1B4_5309 0.35 -2.4 60,559 - Pf1N1B4_5309 0.35 -0.2 60,869 + Pf1N1B4_5310 0.23 -0.8 60,869 + Pf1N1B4_5310 0.23 -0.8 60,869 + +1.8 60,869 + Pf1N1B4_5310 0.23 +1.2 60,870 - Pf1N1B4_5310 0.23 +0.4 60,870 - Pf1N1B4_5310 0.23 +0.9 60,870 - Pf1N1B4_5310 0.23 +0.0 60,870 - Pf1N1B4_5310 0.23 +0.6 60,870 - +1.8 60,870 - Pf1N1B4_5310 0.23 -0.0 60,870 - Pf1N1B4_5310 0.23 -0.2 60,870 - Pf1N1B4_5310 0.23 -0.6 60,885 + Pf1N1B4_5310 0.30 -1.0 61,074 + +0.5 61,075 - +2.5 61,098 - -1.4 61,222 - -0.8 61,421 - +0.3 61,421 - +0.4 61,448 - -0.4 61,464 + -0.6 61,496 + -0.1 61,534 + -0.8 61,605 - +0.5 61,675 + -0.7 61,675 + +0.2 61,676 - +0.2 61,679 + +0.3 61,679 + -1.4 61,679 + +1.3 61,679 + +1.0 61,679 + -0.6 61,679 + +3.3 61,679 + -1.5 61,679 + -0.9 61,679 + +0.9 61,680 - -0.6 61,714 + +3.0 61,714 + +0.6 61,723 + +0.4
Or see this region's nucleotide sequence