Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5073

Experiment: Cisplatin 0.006 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_5071 and Pf1N1B4_5072 are separated by 90 nucleotidesPf1N1B4_5072 and Pf1N1B4_5073 are separated by 4 nucleotidesPf1N1B4_5073 and Pf1N1B4_5074 are separated by 115 nucleotides Pf1N1B4_5071 - FIG00959535: hypothetical protein, at 5,616,450 to 5,617,673 _5071 Pf1N1B4_5072 - Glycerol-3-phosphate regulon repressor, at 5,617,764 to 5,618,582 _5072 Pf1N1B4_5073 - Hydroxypyruvate isomerase (EC 5.3.1.22), at 5,618,587 to 5,619,369 _5073 Pf1N1B4_5074 - Gluconate permease, at 5,619,485 to 5,620,897 _5074 Position (kb) 5618 5619 5620Strain fitness (log2 ratio) -2 -1 0 1 2at 5617.711 kb on + strandat 5617.954 kb on - strand, within Pf1N1B4_5072at 5618.094 kb on + strand, within Pf1N1B4_5072at 5618.133 kb on + strand, within Pf1N1B4_5072at 5618.136 kb on - strand, within Pf1N1B4_5072at 5618.457 kb on + strand, within Pf1N1B4_5072at 5618.458 kb on - strand, within Pf1N1B4_5072at 5618.580 kb on + strandat 5618.581 kb on - strandat 5618.635 kb on - strandat 5618.673 kb on - strand, within Pf1N1B4_5073at 5618.709 kb on - strand, within Pf1N1B4_5073at 5618.709 kb on - strandat 5618.764 kb on - strand, within Pf1N1B4_5073at 5619.005 kb on + strandat 5619.092 kb on + strand, within Pf1N1B4_5073at 5619.093 kb on - strandat 5619.117 kb on + strand, within Pf1N1B4_5073at 5619.269 kb on + strand, within Pf1N1B4_5073at 5619.379 kb on + strandat 5619.379 kb on + strandat 5619.380 kb on - strandat 5619.380 kb on - strandat 5619.380 kb on - strandat 5619.380 kb on - strandat 5619.380 kb on - strandat 5619.380 kb on - strandat 5619.380 kb on - strandat 5619.380 kb on - strandat 5619.383 kb on + strandat 5619.383 kb on + strandat 5619.383 kb on + strandat 5619.384 kb on - strandat 5619.384 kb on - strandat 5619.455 kb on + strandat 5619.511 kb on + strandat 5619.512 kb on - strandat 5619.955 kb on + strandat 5620.299 kb on + strand, within Pf1N1B4_5074at 5620.300 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
remove
5,617,711 + +0.9
5,617,954 - Pf1N1B4_5072 0.23 -2.4
5,618,094 + Pf1N1B4_5072 0.40 -1.0
5,618,133 + Pf1N1B4_5072 0.45 -0.2
5,618,136 - Pf1N1B4_5072 0.45 -1.4
5,618,457 + Pf1N1B4_5072 0.85 -1.1
5,618,458 - Pf1N1B4_5072 0.85 +0.0
5,618,580 + +0.8
5,618,581 - +0.1
5,618,635 - +0.1
5,618,673 - Pf1N1B4_5073 0.11 +0.9
5,618,709 - Pf1N1B4_5073 0.16 -1.5
5,618,709 - +0.9
5,618,764 - Pf1N1B4_5073 0.23 -2.2
5,619,005 + +0.3
5,619,092 + Pf1N1B4_5073 0.64 -0.3
5,619,093 - +1.9
5,619,117 + Pf1N1B4_5073 0.68 -0.1
5,619,269 + Pf1N1B4_5073 0.87 -1.4
5,619,379 + +1.1
5,619,379 + +1.1
5,619,380 - +1.0
5,619,380 - -0.8
5,619,380 - -0.1
5,619,380 - -1.0
5,619,380 - -1.4
5,619,380 - -1.4
5,619,380 - -0.7
5,619,380 - +0.4
5,619,383 + +1.6
5,619,383 + -1.4
5,619,383 + +1.4
5,619,384 - -2.0
5,619,384 - +0.1
5,619,455 + +2.7
5,619,511 + -1.4
5,619,512 - +0.9
5,619,955 + -0.4
5,620,299 + Pf1N1B4_5074 0.58 -0.4
5,620,300 - -1.2

Or see this region's nucleotide sequence