Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5071 and Pf1N1B4_5072 are separated by 90 nucleotides Pf1N1B4_5072 and Pf1N1B4_5073 are separated by 4 nucleotides Pf1N1B4_5073 and Pf1N1B4_5074 are separated by 115 nucleotides
Pf1N1B4_5071 - FIG00959535: hypothetical protein, at 5,616,450 to 5,617,673
_5071
Pf1N1B4_5072 - Glycerol-3-phosphate regulon repressor, at 5,617,764 to 5,618,582
_5072
Pf1N1B4_5073 - Hydroxypyruvate isomerase (EC 5.3.1.22), at 5,618,587 to 5,619,369
_5073
Pf1N1B4_5074 - Gluconate permease, at 5,619,485 to 5,620,897
_5074
Position (kb)
5618
5619
5620 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5617.711 kb on + strand at 5617.954 kb on - strand, within Pf1N1B4_5072 at 5618.094 kb on + strand, within Pf1N1B4_5072 at 5618.133 kb on + strand, within Pf1N1B4_5072 at 5618.136 kb on - strand, within Pf1N1B4_5072 at 5618.457 kb on + strand, within Pf1N1B4_5072 at 5618.458 kb on - strand, within Pf1N1B4_5072 at 5618.580 kb on + strand at 5618.581 kb on - strand at 5618.635 kb on - strand at 5618.673 kb on - strand, within Pf1N1B4_5073 at 5618.709 kb on - strand, within Pf1N1B4_5073 at 5618.709 kb on - strand at 5618.764 kb on - strand, within Pf1N1B4_5073 at 5619.005 kb on + strand at 5619.092 kb on + strand, within Pf1N1B4_5073 at 5619.093 kb on - strand at 5619.117 kb on + strand, within Pf1N1B4_5073 at 5619.269 kb on + strand, within Pf1N1B4_5073 at 5619.379 kb on + strand at 5619.379 kb on + strand at 5619.380 kb on - strand at 5619.380 kb on - strand at 5619.380 kb on - strand at 5619.380 kb on - strand at 5619.380 kb on - strand at 5619.380 kb on - strand at 5619.380 kb on - strand at 5619.380 kb on - strand at 5619.383 kb on + strand at 5619.383 kb on + strand at 5619.383 kb on + strand at 5619.384 kb on - strand at 5619.384 kb on - strand at 5619.455 kb on + strand at 5619.511 kb on + strand at 5619.512 kb on - strand at 5619.955 kb on + strand at 5620.299 kb on + strand, within Pf1N1B4_5074 at 5620.300 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 5,617,711 + +0.9 5,617,954 - Pf1N1B4_5072 0.23 -2.4 5,618,094 + Pf1N1B4_5072 0.40 -1.0 5,618,133 + Pf1N1B4_5072 0.45 -0.2 5,618,136 - Pf1N1B4_5072 0.45 -1.4 5,618,457 + Pf1N1B4_5072 0.85 -1.1 5,618,458 - Pf1N1B4_5072 0.85 +0.0 5,618,580 + +0.8 5,618,581 - +0.1 5,618,635 - +0.1 5,618,673 - Pf1N1B4_5073 0.11 +0.9 5,618,709 - Pf1N1B4_5073 0.16 -1.5 5,618,709 - +0.9 5,618,764 - Pf1N1B4_5073 0.23 -2.2 5,619,005 + +0.3 5,619,092 + Pf1N1B4_5073 0.64 -0.3 5,619,093 - +1.9 5,619,117 + Pf1N1B4_5073 0.68 -0.1 5,619,269 + Pf1N1B4_5073 0.87 -1.4 5,619,379 + +1.1 5,619,379 + +1.1 5,619,380 - +1.0 5,619,380 - -0.8 5,619,380 - -0.1 5,619,380 - -1.0 5,619,380 - -1.4 5,619,380 - -1.4 5,619,380 - -0.7 5,619,380 - +0.4 5,619,383 + +1.6 5,619,383 + -1.4 5,619,383 + +1.4 5,619,384 - -2.0 5,619,384 - +0.1 5,619,455 + +2.7 5,619,511 + -1.4 5,619,512 - +0.9 5,619,955 + -0.4 5,620,299 + Pf1N1B4_5074 0.58 -0.4 5,620,300 - -1.2
Or see this region's nucleotide sequence