Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_478 and Pf1N1B4_479 are separated by 249 nucleotides Pf1N1B4_479 and Pf1N1B4_480 overlap by 20 nucleotides
Pf1N1B4_478 - Transglutaminase-like enzymes, putative cysteine proteases, at 569,762 to 570,421
_478
Pf1N1B4_479 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 570,671 to 570,949
_479
Pf1N1B4_480 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 570,930 to 573,119
_480
Position (kb) 570
571 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 569.754 kb on - strand at 569.901 kb on + strand, within Pf1N1B4_478 at 569.902 kb on - strand, within Pf1N1B4_478 at 569.902 kb on - strand, within Pf1N1B4_478 at 569.902 kb on - strand, within Pf1N1B4_478 at 569.931 kb on + strand, within Pf1N1B4_478 at 569.931 kb on + strand, within Pf1N1B4_478 at 569.932 kb on - strand, within Pf1N1B4_478 at 570.045 kb on + strand, within Pf1N1B4_478 at 570.045 kb on + strand, within Pf1N1B4_478 at 570.045 kb on + strand, within Pf1N1B4_478 at 570.046 kb on - strand at 570.047 kb on + strand, within Pf1N1B4_478 at 570.047 kb on + strand, within Pf1N1B4_478 at 570.047 kb on + strand, within Pf1N1B4_478 at 570.047 kb on + strand, within Pf1N1B4_478 at 570.047 kb on + strand, within Pf1N1B4_478 at 570.047 kb on + strand, within Pf1N1B4_478 at 570.047 kb on + strand, within Pf1N1B4_478 at 570.047 kb on + strand, within Pf1N1B4_478 at 570.048 kb on - strand, within Pf1N1B4_478 at 570.048 kb on - strand, within Pf1N1B4_478 at 570.048 kb on - strand, within Pf1N1B4_478 at 570.048 kb on - strand, within Pf1N1B4_478 at 570.058 kb on - strand at 570.121 kb on + strand, within Pf1N1B4_478 at 570.121 kb on + strand, within Pf1N1B4_478 at 570.171 kb on - strand, within Pf1N1B4_478 at 570.171 kb on - strand, within Pf1N1B4_478 at 570.171 kb on - strand, within Pf1N1B4_478 at 570.204 kb on + strand, within Pf1N1B4_478 at 570.204 kb on + strand, within Pf1N1B4_478 at 570.204 kb on + strand, within Pf1N1B4_478 at 570.205 kb on - strand, within Pf1N1B4_478 at 570.205 kb on - strand, within Pf1N1B4_478 at 570.267 kb on + strand, within Pf1N1B4_478 at 570.276 kb on + strand, within Pf1N1B4_478 at 570.276 kb on + strand, within Pf1N1B4_478 at 570.277 kb on - strand, within Pf1N1B4_478 at 570.277 kb on - strand, within Pf1N1B4_478 at 570.277 kb on - strand, within Pf1N1B4_478 at 570.277 kb on - strand at 570.277 kb on - strand, within Pf1N1B4_478 at 570.277 kb on - strand, within Pf1N1B4_478 at 570.300 kb on + strand, within Pf1N1B4_478 at 570.301 kb on - strand, within Pf1N1B4_478 at 570.303 kb on + strand, within Pf1N1B4_478 at 570.303 kb on + strand, within Pf1N1B4_478 at 570.303 kb on + strand, within Pf1N1B4_478 at 570.304 kb on - strand at 570.304 kb on - strand, within Pf1N1B4_478 at 570.304 kb on - strand, within Pf1N1B4_478 at 570.411 kb on + strand at 570.412 kb on - strand at 570.412 kb on - strand at 570.412 kb on - strand at 570.412 kb on - strand at 570.550 kb on - strand at 570.577 kb on + strand at 570.577 kb on + strand at 570.577 kb on + strand at 570.577 kb on + strand at 570.577 kb on + strand at 570.577 kb on + strand at 570.577 kb on + strand at 570.577 kb on + strand at 570.578 kb on - strand at 570.612 kb on + strand at 570.612 kb on + strand at 570.612 kb on + strand at 570.612 kb on + strand at 570.613 kb on - strand at 570.625 kb on + strand at 570.625 kb on + strand at 570.625 kb on + strand at 570.670 kb on + strand at 570.670 kb on + strand at 570.670 kb on + strand at 570.671 kb on - strand at 570.671 kb on - strand at 570.671 kb on - strand at 570.671 kb on - strand at 570.713 kb on + strand, within Pf1N1B4_479 at 570.767 kb on + strand, within Pf1N1B4_479 at 570.871 kb on + strand, within Pf1N1B4_479 at 570.871 kb on + strand, within Pf1N1B4_479 at 570.899 kb on - strand, within Pf1N1B4_479 at 570.899 kb on - strand, within Pf1N1B4_479 at 570.899 kb on - strand, within Pf1N1B4_479 at 571.221 kb on + strand, within Pf1N1B4_480 at 571.354 kb on - strand, within Pf1N1B4_480 at 571.515 kb on + strand, within Pf1N1B4_480 at 571.516 kb on - strand at 571.516 kb on - strand, within Pf1N1B4_480 at 571.566 kb on + strand, within Pf1N1B4_480 at 571.566 kb on + strand, within Pf1N1B4_480 at 571.567 kb on - strand, within Pf1N1B4_480 at 571.567 kb on - strand, within Pf1N1B4_480 at 571.567 kb on - strand, within Pf1N1B4_480 at 571.583 kb on - strand, within Pf1N1B4_480 at 571.646 kb on - strand, within Pf1N1B4_480 at 571.651 kb on + strand, within Pf1N1B4_480 at 571.652 kb on - strand, within Pf1N1B4_480 at 571.652 kb on - strand, within Pf1N1B4_480 at 571.652 kb on - strand, within Pf1N1B4_480 at 571.714 kb on + strand at 571.714 kb on + strand, within Pf1N1B4_480 at 571.714 kb on + strand, within Pf1N1B4_480 at 571.714 kb on + strand, within Pf1N1B4_480 at 571.714 kb on + strand, within Pf1N1B4_480 at 571.715 kb on - strand, within Pf1N1B4_480 at 571.715 kb on - strand, within Pf1N1B4_480 at 571.715 kb on - strand, within Pf1N1B4_480 at 571.715 kb on - strand, within Pf1N1B4_480 at 571.715 kb on - strand, within Pf1N1B4_480 at 571.715 kb on - strand, within Pf1N1B4_480 at 571.715 kb on - strand, within Pf1N1B4_480 at 571.715 kb on - strand, within Pf1N1B4_480 at 571.715 kb on - strand, within Pf1N1B4_480 at 571.949 kb on + strand, within Pf1N1B4_480
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 569,754 - -1.0 569,901 + Pf1N1B4_478 0.21 +1.6 569,902 - Pf1N1B4_478 0.21 +1.3 569,902 - Pf1N1B4_478 0.21 -1.0 569,902 - Pf1N1B4_478 0.21 -0.0 569,931 + Pf1N1B4_478 0.26 +1.7 569,931 + Pf1N1B4_478 0.26 -0.0 569,932 - Pf1N1B4_478 0.26 -0.6 570,045 + Pf1N1B4_478 0.43 -1.2 570,045 + Pf1N1B4_478 0.43 -1.0 570,045 + Pf1N1B4_478 0.43 -0.6 570,046 - -0.0 570,047 + Pf1N1B4_478 0.43 -1.6 570,047 + Pf1N1B4_478 0.43 -0.0 570,047 + Pf1N1B4_478 0.43 +1.3 570,047 + Pf1N1B4_478 0.43 -1.9 570,047 + Pf1N1B4_478 0.43 +1.4 570,047 + Pf1N1B4_478 0.43 -1.6 570,047 + Pf1N1B4_478 0.43 -0.0 570,047 + Pf1N1B4_478 0.43 -1.6 570,048 - Pf1N1B4_478 0.43 -0.0 570,048 - Pf1N1B4_478 0.43 +0.3 570,048 - Pf1N1B4_478 0.43 -0.0 570,048 - Pf1N1B4_478 0.43 -1.4 570,058 - +1.0 570,121 + Pf1N1B4_478 0.54 +0.5 570,121 + Pf1N1B4_478 0.54 -0.2 570,171 - Pf1N1B4_478 0.62 +1.1 570,171 - Pf1N1B4_478 0.62 -1.3 570,171 - Pf1N1B4_478 0.62 -0.0 570,204 + Pf1N1B4_478 0.67 -2.8 570,204 + Pf1N1B4_478 0.67 -1.8 570,204 + Pf1N1B4_478 0.67 +1.8 570,205 - Pf1N1B4_478 0.67 +1.5 570,205 - Pf1N1B4_478 0.67 +0.3 570,267 + Pf1N1B4_478 0.77 -0.6 570,276 + Pf1N1B4_478 0.78 -2.4 570,276 + Pf1N1B4_478 0.78 +1.0 570,277 - Pf1N1B4_478 0.78 -1.5 570,277 - Pf1N1B4_478 0.78 +2.3 570,277 - Pf1N1B4_478 0.78 +1.0 570,277 - +0.5 570,277 - Pf1N1B4_478 0.78 -1.6 570,277 - Pf1N1B4_478 0.78 -0.9 570,300 + Pf1N1B4_478 0.82 +0.5 570,301 - Pf1N1B4_478 0.82 +0.2 570,303 + Pf1N1B4_478 0.82 +0.4 570,303 + Pf1N1B4_478 0.82 +3.4 570,303 + Pf1N1B4_478 0.82 -0.0 570,304 - -0.0 570,304 - Pf1N1B4_478 0.82 -0.0 570,304 - Pf1N1B4_478 0.82 -2.0 570,411 + +1.8 570,412 - -1.6 570,412 - +0.5 570,412 - +1.0 570,412 - +0.2 570,550 - +0.7 570,577 + -0.6 570,577 + +0.8 570,577 + +2.0 570,577 + -1.2 570,577 + +1.0 570,577 + +1.3 570,577 + -0.8 570,577 + +0.4 570,578 - +1.0 570,612 + -0.5 570,612 + +0.7 570,612 + +2.0 570,612 + +0.3 570,613 - -0.6 570,625 + +1.0 570,625 + -1.2 570,625 + +2.5 570,670 + +1.3 570,670 + -0.4 570,670 + +1.5 570,671 - +1.8 570,671 - +2.3 570,671 - -2.0 570,671 - -0.8 570,713 + Pf1N1B4_479 0.15 -1.6 570,767 + Pf1N1B4_479 0.34 -0.0 570,871 + Pf1N1B4_479 0.72 -1.5 570,871 + Pf1N1B4_479 0.72 -1.5 570,899 - Pf1N1B4_479 0.82 -0.0 570,899 - Pf1N1B4_479 0.82 -0.5 570,899 - Pf1N1B4_479 0.82 -1.0 571,221 + Pf1N1B4_480 0.13 +0.4 571,354 - Pf1N1B4_480 0.19 -0.0 571,515 + Pf1N1B4_480 0.27 -0.3 571,516 - -0.0 571,516 - Pf1N1B4_480 0.27 +1.0 571,566 + Pf1N1B4_480 0.29 +1.1 571,566 + Pf1N1B4_480 0.29 -0.0 571,567 - Pf1N1B4_480 0.29 -0.5 571,567 - Pf1N1B4_480 0.29 -0.5 571,567 - Pf1N1B4_480 0.29 -0.5 571,583 - Pf1N1B4_480 0.30 -0.5 571,646 - Pf1N1B4_480 0.33 +2.3 571,651 + Pf1N1B4_480 0.33 +1.3 571,652 - Pf1N1B4_480 0.33 -1.3 571,652 - Pf1N1B4_480 0.33 +0.3 571,652 - Pf1N1B4_480 0.33 -1.0 571,714 + -0.0 571,714 + Pf1N1B4_480 0.36 -1.0 571,714 + Pf1N1B4_480 0.36 -0.0 571,714 + Pf1N1B4_480 0.36 -0.8 571,714 + Pf1N1B4_480 0.36 -1.0 571,715 - Pf1N1B4_480 0.36 -2.8 571,715 - Pf1N1B4_480 0.36 -1.6 571,715 - Pf1N1B4_480 0.36 +1.5 571,715 - Pf1N1B4_480 0.36 +0.5 571,715 - Pf1N1B4_480 0.36 -0.5 571,715 - Pf1N1B4_480 0.36 +0.5 571,715 - Pf1N1B4_480 0.36 -0.3 571,715 - Pf1N1B4_480 0.36 -0.3 571,715 - Pf1N1B4_480 0.36 -0.0 571,949 + Pf1N1B4_480 0.47 -0.0
Or see this region's nucleotide sequence