Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4759

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4758 and Pf1N1B4_4759 are separated by 12 nucleotidesPf1N1B4_4759 and Pf1N1B4_4760 are separated by 391 nucleotidesPf1N1B4_4760 and Pf1N1B4_4761 overlap by 4 nucleotides Pf1N1B4_4758 - Threonine dehydratase biosynthetic (EC 4.3.1.19), at 5,256,175 to 5,257,188 _4758 Pf1N1B4_4759 - Proteinase inhibitor I11, ecotin precursor, at 5,257,201 to 5,257,683 _4759 Pf1N1B4_4760 - FIG00962118: hypothetical protein, at 5,258,075 to 5,258,344 _4760 Pf1N1B4_4761 - hypothetical protein, at 5,258,341 to 5,258,739 _4761 Position (kb) 5257 5258Strain fitness (log2 ratio) -3 -2 -1 0 1at 5256.214 kb on + strandat 5256.215 kb on - strandat 5256.215 kb on - strandat 5256.368 kb on - strand, within Pf1N1B4_4758at 5256.521 kb on + strand, within Pf1N1B4_4758at 5256.522 kb on - strand, within Pf1N1B4_4758at 5256.590 kb on - strand, within Pf1N1B4_4758at 5256.776 kb on - strand, within Pf1N1B4_4758at 5257.067 kb on - strand, within Pf1N1B4_4758at 5257.067 kb on - strand, within Pf1N1B4_4758at 5257.067 kb on - strand, within Pf1N1B4_4758at 5257.277 kb on + strand, within Pf1N1B4_4759at 5257.304 kb on + strand, within Pf1N1B4_4759at 5257.305 kb on - strand, within Pf1N1B4_4759at 5257.645 kb on + strandat 5257.901 kb on + strandat 5258.097 kb on + strandat 5258.180 kb on + strand, within Pf1N1B4_4760at 5258.226 kb on + strandat 5258.503 kb on - strand, within Pf1N1B4_4761at 5258.503 kb on - strand, within Pf1N1B4_4761at 5258.558 kb on + strand, within Pf1N1B4_4761

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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5,256,214 + +0.6
5,256,215 - -0.4
5,256,215 - -1.7
5,256,368 - Pf1N1B4_4758 0.19 +0.2
5,256,521 + Pf1N1B4_4758 0.34 -1.8
5,256,522 - Pf1N1B4_4758 0.34 -1.0
5,256,590 - Pf1N1B4_4758 0.41 -0.4
5,256,776 - Pf1N1B4_4758 0.59 +0.1
5,257,067 - Pf1N1B4_4758 0.88 +0.2
5,257,067 - Pf1N1B4_4758 0.88 -3.0
5,257,067 - Pf1N1B4_4758 0.88 -0.4
5,257,277 + Pf1N1B4_4759 0.16 -1.3
5,257,304 + Pf1N1B4_4759 0.21 -1.2
5,257,305 - Pf1N1B4_4759 0.22 -0.7
5,257,645 + -0.4
5,257,901 + -1.4
5,258,097 + +1.0
5,258,180 + Pf1N1B4_4760 0.39 -1.2
5,258,226 + -0.7
5,258,503 - Pf1N1B4_4761 0.41 -1.8
5,258,503 - Pf1N1B4_4761 0.41 +1.0
5,258,558 + Pf1N1B4_4761 0.54 +0.1

Or see this region's nucleotide sequence