Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4424 and Pf1N1B4_4425 overlap by 4 nucleotides Pf1N1B4_4425 and Pf1N1B4_4426 overlap by 4 nucleotides Pf1N1B4_4426 and Pf1N1B4_4427 overlap by 11 nucleotides
Pf1N1B4_4424 - D-2-hydroxyglutarate dehydrogenase, at 4,884,343 to 4,885,767
_4424
Pf1N1B4_4425 - Aspartate aminotransferase (EC 2.6.1.1), at 4,885,764 to 4,886,975
_4425
Pf1N1B4_4426 - Glutamate transport membrane-spanning protein, at 4,886,972 to 4,887,706
_4426
Pf1N1B4_4427 - Glutamate transport membrane-spanning protein, at 4,887,696 to 4,888,484
_4427
Position (kb)
4885
4886
4887 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4885.471 kb on + strand, within Pf1N1B4_4424 at 4885.472 kb on - strand, within Pf1N1B4_4424 at 4885.507 kb on + strand, within Pf1N1B4_4424 at 4885.507 kb on + strand at 4885.508 kb on - strand, within Pf1N1B4_4424 at 4885.665 kb on + strand at 4885.666 kb on - strand at 4885.666 kb on - strand at 4885.666 kb on - strand at 4885.745 kb on + strand at 4885.926 kb on + strand, within Pf1N1B4_4425 at 4885.956 kb on + strand, within Pf1N1B4_4425 at 4886.032 kb on - strand, within Pf1N1B4_4425 at 4886.244 kb on + strand at 4886.244 kb on + strand, within Pf1N1B4_4425 at 4886.245 kb on - strand, within Pf1N1B4_4425 at 4886.245 kb on - strand, within Pf1N1B4_4425 at 4886.305 kb on + strand at 4886.308 kb on - strand, within Pf1N1B4_4425 at 4886.308 kb on - strand, within Pf1N1B4_4425 at 4886.487 kb on + strand, within Pf1N1B4_4425 at 4886.488 kb on - strand, within Pf1N1B4_4425 at 4886.678 kb on - strand, within Pf1N1B4_4425 at 4886.744 kb on - strand, within Pf1N1B4_4425 at 4886.748 kb on - strand, within Pf1N1B4_4425 at 4887.026 kb on + strand at 4887.558 kb on - strand, within Pf1N1B4_4426
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 4,885,471 + Pf1N1B4_4424 0.79 +0.4 4,885,472 - Pf1N1B4_4424 0.79 -0.4 4,885,507 + Pf1N1B4_4424 0.82 -1.0 4,885,507 + +0.6 4,885,508 - Pf1N1B4_4424 0.82 -1.1 4,885,665 + +2.2 4,885,666 - -0.4 4,885,666 - -0.4 4,885,666 - +0.2 4,885,745 + -0.1 4,885,926 + Pf1N1B4_4425 0.13 -2.0 4,885,956 + Pf1N1B4_4425 0.16 -0.4 4,886,032 - Pf1N1B4_4425 0.22 +0.5 4,886,244 + -1.4 4,886,244 + Pf1N1B4_4425 0.40 -2.7 4,886,245 - Pf1N1B4_4425 0.40 -2.4 4,886,245 - Pf1N1B4_4425 0.40 +0.4 4,886,305 + +0.2 4,886,308 - Pf1N1B4_4425 0.45 -0.4 4,886,308 - Pf1N1B4_4425 0.45 -0.6 4,886,487 + Pf1N1B4_4425 0.60 -1.7 4,886,488 - Pf1N1B4_4425 0.60 -0.8 4,886,678 - Pf1N1B4_4425 0.75 -1.4 4,886,744 - Pf1N1B4_4425 0.81 +1.2 4,886,748 - Pf1N1B4_4425 0.81 -0.4 4,887,026 + +0.1 4,887,558 - Pf1N1B4_4426 0.80 +0.6
Or see this region's nucleotide sequence