Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_44

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_43 and Pf1N1B4_44 are separated by 145 nucleotidesPf1N1B4_44 and Pf1N1B4_45 are separated by 10 nucleotidesPf1N1B4_45 and Pf1N1B4_46 are separated by 55 nucleotides Pf1N1B4_43 - hypothetical protein, at 50,934 to 51,638 _43 Pf1N1B4_44 - Multicopper oxidase, at 51,784 to 53,577 _44 Pf1N1B4_45 - Copper resistance protein B, at 53,588 to 54,478 _45 Pf1N1B4_46 - Copper resistance protein C precursor, at 54,534 to 54,917 _46 Position (kb) 51 52 53 54Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 50.841 kb on + strandat 50.904 kb on - strandat 50.959 kb on + strandat 50.987 kb on + strandat 50.987 kb on + strandat 50.987 kb on + strandat 51.128 kb on - strandat 51.142 kb on - strand, within Pf1N1B4_43at 51.318 kb on + strand, within Pf1N1B4_43at 51.318 kb on + strand, within Pf1N1B4_43at 51.319 kb on - strand, within Pf1N1B4_43at 51.319 kb on - strand, within Pf1N1B4_43at 51.319 kb on - strand, within Pf1N1B4_43at 51.319 kb on - strand, within Pf1N1B4_43at 51.319 kb on - strand, within Pf1N1B4_43at 51.319 kb on - strand, within Pf1N1B4_43at 51.319 kb on - strand, within Pf1N1B4_43at 51.319 kb on - strand, within Pf1N1B4_43at 51.319 kb on - strand, within Pf1N1B4_43at 51.319 kb on - strand, within Pf1N1B4_43at 51.417 kb on + strand, within Pf1N1B4_43at 51.418 kb on - strandat 51.418 kb on - strand, within Pf1N1B4_43at 51.543 kb on + strand, within Pf1N1B4_43at 51.543 kb on + strand, within Pf1N1B4_43at 51.544 kb on - strand, within Pf1N1B4_43at 51.579 kb on + strandat 51.580 kb on - strandat 51.580 kb on - strandat 51.580 kb on - strandat 51.580 kb on - strandat 51.580 kb on - strandat 51.580 kb on - strandat 51.581 kb on + strandat 51.582 kb on - strandat 51.582 kb on - strandat 51.582 kb on - strandat 51.582 kb on - strandat 51.664 kb on + strandat 51.665 kb on - strandat 51.716 kb on + strandat 51.716 kb on + strandat 51.716 kb on + strandat 51.717 kb on - strandat 51.717 kb on - strandat 51.717 kb on - strandat 51.717 kb on - strandat 51.717 kb on - strandat 52.145 kb on + strand, within Pf1N1B4_44at 52.146 kb on - strand, within Pf1N1B4_44at 52.146 kb on - strand, within Pf1N1B4_44at 52.146 kb on - strand, within Pf1N1B4_44at 52.146 kb on - strand, within Pf1N1B4_44at 52.162 kb on + strand, within Pf1N1B4_44at 52.162 kb on + strand, within Pf1N1B4_44at 52.162 kb on + strand, within Pf1N1B4_44at 52.162 kb on + strand, within Pf1N1B4_44at 52.162 kb on + strand, within Pf1N1B4_44at 52.163 kb on - strand, within Pf1N1B4_44at 52.163 kb on - strandat 52.163 kb on - strand, within Pf1N1B4_44at 52.163 kb on - strand, within Pf1N1B4_44at 52.163 kb on - strand, within Pf1N1B4_44at 52.163 kb on - strand, within Pf1N1B4_44at 52.163 kb on - strand, within Pf1N1B4_44at 52.163 kb on - strand, within Pf1N1B4_44at 52.163 kb on - strand, within Pf1N1B4_44at 52.163 kb on - strand, within Pf1N1B4_44at 52.163 kb on - strand, within Pf1N1B4_44at 52.163 kb on - strand, within Pf1N1B4_44at 52.163 kb on - strand, within Pf1N1B4_44at 52.163 kb on - strand, within Pf1N1B4_44at 52.163 kb on - strand, within Pf1N1B4_44at 52.163 kb on - strand, within Pf1N1B4_44at 52.168 kb on + strand, within Pf1N1B4_44at 52.169 kb on - strand, within Pf1N1B4_44at 52.169 kb on - strand, within Pf1N1B4_44at 52.169 kb on - strand, within Pf1N1B4_44at 52.198 kb on + strand, within Pf1N1B4_44at 52.198 kb on + strand, within Pf1N1B4_44at 52.198 kb on + strand, within Pf1N1B4_44at 52.198 kb on + strand, within Pf1N1B4_44at 52.199 kb on - strand, within Pf1N1B4_44at 52.199 kb on - strand, within Pf1N1B4_44at 52.199 kb on - strand, within Pf1N1B4_44at 52.199 kb on - strand, within Pf1N1B4_44at 52.300 kb on + strand, within Pf1N1B4_44at 52.300 kb on + strand, within Pf1N1B4_44at 52.379 kb on - strand, within Pf1N1B4_44at 52.379 kb on - strand, within Pf1N1B4_44at 52.385 kb on - strand, within Pf1N1B4_44at 52.385 kb on - strand, within Pf1N1B4_44at 52.385 kb on - strand, within Pf1N1B4_44at 52.519 kb on + strand, within Pf1N1B4_44at 52.519 kb on + strand, within Pf1N1B4_44at 52.519 kb on + strand, within Pf1N1B4_44at 52.520 kb on - strand, within Pf1N1B4_44at 52.520 kb on - strand, within Pf1N1B4_44at 52.520 kb on - strand, within Pf1N1B4_44at 52.525 kb on + strandat 52.525 kb on + strand, within Pf1N1B4_44at 52.525 kb on + strand, within Pf1N1B4_44at 52.525 kb on + strandat 52.525 kb on + strand, within Pf1N1B4_44at 52.525 kb on + strand, within Pf1N1B4_44at 52.525 kb on + strand, within Pf1N1B4_44at 52.525 kb on + strand, within Pf1N1B4_44at 52.526 kb on - strand, within Pf1N1B4_44at 52.526 kb on - strand, within Pf1N1B4_44at 52.526 kb on - strand, within Pf1N1B4_44at 52.526 kb on - strand, within Pf1N1B4_44at 52.529 kb on + strand, within Pf1N1B4_44at 52.529 kb on + strand, within Pf1N1B4_44at 52.530 kb on - strand, within Pf1N1B4_44at 52.530 kb on - strand, within Pf1N1B4_44at 52.530 kb on - strand, within Pf1N1B4_44at 52.624 kb on + strand, within Pf1N1B4_44at 52.765 kb on + strandat 52.765 kb on + strand, within Pf1N1B4_44at 52.765 kb on + strand, within Pf1N1B4_44at 52.766 kb on - strand, within Pf1N1B4_44at 52.766 kb on - strand, within Pf1N1B4_44at 53.177 kb on - strand, within Pf1N1B4_44at 53.512 kb on + strandat 53.531 kb on - strandat 53.689 kb on + strand, within Pf1N1B4_45at 53.816 kb on + strandat 53.861 kb on + strand, within Pf1N1B4_45at 53.861 kb on + strand, within Pf1N1B4_45at 53.861 kb on + strandat 53.861 kb on + strandat 53.861 kb on + strand, within Pf1N1B4_45at 53.861 kb on + strandat 53.862 kb on - strandat 53.862 kb on - strand, within Pf1N1B4_45at 53.864 kb on + strand, within Pf1N1B4_45at 53.864 kb on + strand, within Pf1N1B4_45at 53.864 kb on + strand, within Pf1N1B4_45at 53.864 kb on + strand, within Pf1N1B4_45at 54.137 kb on + strand, within Pf1N1B4_45at 54.138 kb on - strand, within Pf1N1B4_45at 54.210 kb on - strand, within Pf1N1B4_45at 54.365 kb on + strandat 54.365 kb on + strand, within Pf1N1B4_45at 54.365 kb on + strand, within Pf1N1B4_45at 54.365 kb on + strand, within Pf1N1B4_45at 54.365 kb on + strand, within Pf1N1B4_45at 54.365 kb on + strand, within Pf1N1B4_45at 54.365 kb on + strand, within Pf1N1B4_45at 54.366 kb on - strand, within Pf1N1B4_45at 54.366 kb on - strand, within Pf1N1B4_45at 54.366 kb on - strand, within Pf1N1B4_45at 54.393 kb on - strandat 54.410 kb on + strandat 54.411 kb on - strandat 54.485 kb on + strandat 54.486 kb on - strandat 54.514 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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50,841 + -0.6
50,904 - -1.2
50,959 + -0.8
50,987 + +1.4
50,987 + -0.9
50,987 + -0.7
51,128 - -0.2
51,142 - Pf1N1B4_43 0.30 +1.1
51,318 + Pf1N1B4_43 0.54 -0.2
51,318 + Pf1N1B4_43 0.54 +0.1
51,319 - Pf1N1B4_43 0.55 +0.3
51,319 - Pf1N1B4_43 0.55 +1.0
51,319 - Pf1N1B4_43 0.55 +0.5
51,319 - Pf1N1B4_43 0.55 +0.8
51,319 - Pf1N1B4_43 0.55 +1.7
51,319 - Pf1N1B4_43 0.55 +0.8
51,319 - Pf1N1B4_43 0.55 +2.0
51,319 - Pf1N1B4_43 0.55 +1.5
51,319 - Pf1N1B4_43 0.55 +1.1
51,319 - Pf1N1B4_43 0.55 +1.9
51,417 + Pf1N1B4_43 0.69 -0.6
51,418 - -0.2
51,418 - Pf1N1B4_43 0.69 +2.6
51,543 + Pf1N1B4_43 0.86 +1.0
51,543 + Pf1N1B4_43 0.86 +0.7
51,544 - Pf1N1B4_43 0.87 -1.4
51,579 + -1.2
51,580 - -0.1
51,580 - +2.4
51,580 - +1.1
51,580 - +0.8
51,580 - +2.1
51,580 - +1.1
51,581 + +1.4
51,582 - +0.6
51,582 - +1.4
51,582 - +1.0
51,582 - +0.8
51,664 + +0.2
51,665 - +1.0
51,716 + -2.2
51,716 + -0.2
51,716 + -0.6
51,717 - +0.1
51,717 - +1.8
51,717 - +0.8
51,717 - -3.0
51,717 - +1.0
52,145 + Pf1N1B4_44 0.20 -1.8
52,146 - Pf1N1B4_44 0.20 -0.2
52,146 - Pf1N1B4_44 0.20 +0.1
52,146 - Pf1N1B4_44 0.20 -3.2
52,146 - Pf1N1B4_44 0.20 -0.8
52,162 + Pf1N1B4_44 0.21 +2.6
52,162 + Pf1N1B4_44 0.21 +1.4
52,162 + Pf1N1B4_44 0.21 +0.4
52,162 + Pf1N1B4_44 0.21 -1.2
52,162 + Pf1N1B4_44 0.21 +2.6
52,163 - Pf1N1B4_44 0.21 +1.8
52,163 - -0.2
52,163 - Pf1N1B4_44 0.21 -0.2
52,163 - Pf1N1B4_44 0.21 -1.2
52,163 - Pf1N1B4_44 0.21 +0.1
52,163 - Pf1N1B4_44 0.21 -0.0
52,163 - Pf1N1B4_44 0.21 +1.2
52,163 - Pf1N1B4_44 0.21 -0.2
52,163 - Pf1N1B4_44 0.21 -0.2
52,163 - Pf1N1B4_44 0.21 -2.0
52,163 - Pf1N1B4_44 0.21 +0.1
52,163 - Pf1N1B4_44 0.21 -0.2
52,163 - Pf1N1B4_44 0.21 -0.8
52,163 - Pf1N1B4_44 0.21 -0.7
52,163 - Pf1N1B4_44 0.21 +0.1
52,163 - Pf1N1B4_44 0.21 -1.3
52,168 + Pf1N1B4_44 0.21 +1.1
52,169 - Pf1N1B4_44 0.21 +0.5
52,169 - Pf1N1B4_44 0.21 +1.1
52,169 - Pf1N1B4_44 0.21 +0.8
52,198 + Pf1N1B4_44 0.23 +1.1
52,198 + Pf1N1B4_44 0.23 -1.5
52,198 + Pf1N1B4_44 0.23 +0.8
52,198 + Pf1N1B4_44 0.23 -0.2
52,199 - Pf1N1B4_44 0.23 +0.8
52,199 - Pf1N1B4_44 0.23 +0.6
52,199 - Pf1N1B4_44 0.23 +0.8
52,199 - Pf1N1B4_44 0.23 -0.2
52,300 + Pf1N1B4_44 0.29 +1.1
52,300 + Pf1N1B4_44 0.29 +0.3
52,379 - Pf1N1B4_44 0.33 -0.2
52,379 - Pf1N1B4_44 0.33 +0.5
52,385 - Pf1N1B4_44 0.34 -0.2
52,385 - Pf1N1B4_44 0.34 +0.1
52,385 - Pf1N1B4_44 0.34 +0.4
52,519 + Pf1N1B4_44 0.41 -0.2
52,519 + Pf1N1B4_44 0.41 -0.3
52,519 + Pf1N1B4_44 0.41 -0.6
52,520 - Pf1N1B4_44 0.41 -1.8
52,520 - Pf1N1B4_44 0.41 -2.2
52,520 - Pf1N1B4_44 0.41 +2.1
52,525 + +1.4
52,525 + Pf1N1B4_44 0.41 -0.6
52,525 + Pf1N1B4_44 0.41 +0.5
52,525 + +1.8
52,525 + Pf1N1B4_44 0.41 -1.2
52,525 + Pf1N1B4_44 0.41 -1.2
52,525 + Pf1N1B4_44 0.41 -1.5
52,525 + Pf1N1B4_44 0.41 +0.2
52,526 - Pf1N1B4_44 0.41 -0.2
52,526 - Pf1N1B4_44 0.41 -1.8
52,526 - Pf1N1B4_44 0.41 -0.2
52,526 - Pf1N1B4_44 0.41 +0.6
52,529 + Pf1N1B4_44 0.42 +0.2
52,529 + Pf1N1B4_44 0.42 +0.4
52,530 - Pf1N1B4_44 0.42 +3.0
52,530 - Pf1N1B4_44 0.42 +0.4
52,530 - Pf1N1B4_44 0.42 +0.4
52,624 + Pf1N1B4_44 0.47 +0.4
52,765 + -1.8
52,765 + Pf1N1B4_44 0.55 +0.6
52,765 + Pf1N1B4_44 0.55 +1.0
52,766 - Pf1N1B4_44 0.55 +1.9
52,766 - Pf1N1B4_44 0.55 -1.2
53,177 - Pf1N1B4_44 0.78 -1.8
53,512 + +0.8
53,531 - -1.4
53,689 + Pf1N1B4_45 0.11 -2.4
53,816 + +0.8
53,861 + Pf1N1B4_45 0.31 -0.2
53,861 + Pf1N1B4_45 0.31 -0.1
53,861 + +0.4
53,861 + -0.2
53,861 + Pf1N1B4_45 0.31 +0.2
53,861 + -2.2
53,862 - +1.4
53,862 - Pf1N1B4_45 0.31 -0.0
53,864 + Pf1N1B4_45 0.31 -1.5
53,864 + Pf1N1B4_45 0.31 +1.4
53,864 + Pf1N1B4_45 0.31 -0.6
53,864 + Pf1N1B4_45 0.31 -1.2
54,137 + Pf1N1B4_45 0.62 -0.4
54,138 - Pf1N1B4_45 0.62 +0.2
54,210 - Pf1N1B4_45 0.70 +0.0
54,365 + +2.4
54,365 + Pf1N1B4_45 0.87 +0.5
54,365 + Pf1N1B4_45 0.87 +0.3
54,365 + Pf1N1B4_45 0.87 +1.4
54,365 + Pf1N1B4_45 0.87 -1.2
54,365 + Pf1N1B4_45 0.87 -0.2
54,365 + Pf1N1B4_45 0.87 -1.2
54,366 - Pf1N1B4_45 0.87 -2.2
54,366 - Pf1N1B4_45 0.87 -1.6
54,366 - Pf1N1B4_45 0.87 +1.4
54,393 - -0.7
54,410 + +1.2
54,411 - -1.2
54,485 + -1.2
54,486 - +1.4
54,514 - +0.8

Or see this region's nucleotide sequence