Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4380 and Pf1N1B4_4381 are separated by 102 nucleotides Pf1N1B4_4381 and Pf1N1B4_4382 are separated by 249 nucleotides
Pf1N1B4_4380 - oxidoreductase, at 4,837,842 to 4,838,912
_4380
Pf1N1B4_4381 - Transcriptional regulator, LysR family, at 4,839,015 to 4,839,896
_4381
Pf1N1B4_4382 - N-carbamoylputrescine amidase (EC 3.5.1.53), at 4,840,146 to 4,841,861
_4382
Position (kb)
4839
4840 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4838.065 kb on + strand, within Pf1N1B4_4380 at 4838.137 kb on + strand at 4838.137 kb on + strand at 4838.179 kb on + strand at 4838.179 kb on + strand, within Pf1N1B4_4380 at 4838.179 kb on + strand, within Pf1N1B4_4380 at 4838.180 kb on - strand at 4838.327 kb on - strand, within Pf1N1B4_4380 at 4838.649 kb on + strand, within Pf1N1B4_4380 at 4838.650 kb on - strand at 4838.650 kb on - strand, within Pf1N1B4_4380 at 4838.708 kb on + strand, within Pf1N1B4_4380 at 4838.716 kb on + strand, within Pf1N1B4_4380 at 4838.789 kb on - strand, within Pf1N1B4_4380 at 4838.789 kb on - strand, within Pf1N1B4_4380 at 4838.789 kb on - strand, within Pf1N1B4_4380 at 4838.789 kb on - strand, within Pf1N1B4_4380 at 4838.873 kb on + strand at 4839.330 kb on + strand, within Pf1N1B4_4381 at 4839.330 kb on + strand, within Pf1N1B4_4381 at 4839.330 kb on + strand, within Pf1N1B4_4381 at 4839.366 kb on + strand, within Pf1N1B4_4381 at 4839.511 kb on - strand, within Pf1N1B4_4381 at 4839.725 kb on - strand, within Pf1N1B4_4381 at 4839.814 kb on - strand at 4840.007 kb on - strand at 4840.023 kb on + strand at 4840.024 kb on - strand at 4840.024 kb on - strand at 4840.569 kb on + strand, within Pf1N1B4_4382 at 4840.569 kb on + strand, within Pf1N1B4_4382 at 4840.602 kb on + strand, within Pf1N1B4_4382 at 4840.740 kb on + strand, within Pf1N1B4_4382 at 4840.741 kb on - strand, within Pf1N1B4_4382 at 4840.741 kb on - strand, within Pf1N1B4_4382 at 4840.742 kb on + strand at 4840.742 kb on + strand, within Pf1N1B4_4382
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 4,838,065 + Pf1N1B4_4380 0.21 +0.5 4,838,137 + -1.4 4,838,137 + -2.0 4,838,179 + +0.0 4,838,179 + Pf1N1B4_4380 0.31 -3.2 4,838,179 + Pf1N1B4_4380 0.31 +2.2 4,838,180 - -1.4 4,838,327 - Pf1N1B4_4380 0.45 +1.4 4,838,649 + Pf1N1B4_4380 0.75 +0.9 4,838,650 - +0.9 4,838,650 - Pf1N1B4_4380 0.75 -0.3 4,838,708 + Pf1N1B4_4380 0.81 -0.4 4,838,716 + Pf1N1B4_4380 0.82 -0.4 4,838,789 - Pf1N1B4_4380 0.88 +1.1 4,838,789 - Pf1N1B4_4380 0.88 +1.8 4,838,789 - Pf1N1B4_4380 0.88 -1.4 4,838,789 - Pf1N1B4_4380 0.88 +0.0 4,838,873 + +0.6 4,839,330 + Pf1N1B4_4381 0.36 -0.4 4,839,330 + Pf1N1B4_4381 0.36 +0.6 4,839,330 + Pf1N1B4_4381 0.36 -0.8 4,839,366 + Pf1N1B4_4381 0.40 -2.4 4,839,511 - Pf1N1B4_4381 0.56 -0.7 4,839,725 - Pf1N1B4_4381 0.80 -0.7 4,839,814 - +0.2 4,840,007 - -0.4 4,840,023 + -1.0 4,840,024 - +0.2 4,840,024 - +0.6 4,840,569 + Pf1N1B4_4382 0.25 -0.8 4,840,569 + Pf1N1B4_4382 0.25 -2.0 4,840,602 + Pf1N1B4_4382 0.27 -2.0 4,840,740 + Pf1N1B4_4382 0.35 +0.2 4,840,741 - Pf1N1B4_4382 0.35 -0.4 4,840,741 - Pf1N1B4_4382 0.35 -0.4 4,840,742 + -0.4 4,840,742 + Pf1N1B4_4382 0.35 +0.6
Or see this region's nucleotide sequence