Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4191

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4191 and Pf1N1B4_4192 are separated by 77 nucleotidesPf1N1B4_4192 and Pf1N1B4_4193 are separated by 47 nucleotides Pf1N1B4_4191 - Bifunctional protein: zinc-containing alcohol dehydrogenase; quinone oxidoreductase ( NADPH:quinone reductase) (EC 1.1.1.-); Similar to arginate lyase, at 4,643,834 to 4,644,832 _4191 Pf1N1B4_4192 - Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase, at 4,644,910 to 4,645,776 _4192 Pf1N1B4_4193 - Oxidoreductase, short chain dehydrogenase/reductase family, at 4,645,824 to 4,646,612 _4193 Position (kb) 4643 4644 4645Strain fitness (log2 ratio) -2 -1 0 1 2at 4642.864 kb on + strandat 4642.865 kb on - strandat 4642.951 kb on + strandat 4642.977 kb on + strandat 4643.000 kb on + strandat 4643.001 kb on - strandat 4643.015 kb on + strandat 4643.016 kb on - strandat 4643.048 kb on - strandat 4643.068 kb on - strandat 4643.129 kb on + strandat 4643.197 kb on - strandat 4643.197 kb on - strandat 4643.402 kb on - strandat 4643.425 kb on - strandat 4643.502 kb on + strandat 4643.502 kb on + strandat 4643.502 kb on + strandat 4643.502 kb on + strandat 4643.503 kb on - strandat 4643.534 kb on - strandat 4643.703 kb on + strandat 4643.788 kb on + strandat 4643.789 kb on - strandat 4643.789 kb on - strandat 4643.807 kb on + strandat 4643.825 kb on - strandat 4643.827 kb on - strandat 4643.981 kb on + strand, within Pf1N1B4_4191at 4643.981 kb on + strand, within Pf1N1B4_4191at 4643.981 kb on + strand, within Pf1N1B4_4191at 4644.011 kb on - strand, within Pf1N1B4_4191at 4644.182 kb on + strand, within Pf1N1B4_4191at 4644.183 kb on - strand, within Pf1N1B4_4191at 4644.252 kb on + strand, within Pf1N1B4_4191at 4644.573 kb on + strand, within Pf1N1B4_4191at 4644.574 kb on - strand, within Pf1N1B4_4191at 4644.650 kb on + strand, within Pf1N1B4_4191at 4644.650 kb on + strand, within Pf1N1B4_4191at 4644.664 kb on + strand, within Pf1N1B4_4191at 4644.664 kb on + strand, within Pf1N1B4_4191at 4644.664 kb on + strand, within Pf1N1B4_4191at 4644.665 kb on - strand, within Pf1N1B4_4191at 4644.665 kb on - strand, within Pf1N1B4_4191at 4644.665 kb on - strand, within Pf1N1B4_4191at 4644.665 kb on - strand, within Pf1N1B4_4191at 4644.665 kb on - strand, within Pf1N1B4_4191at 4644.665 kb on - strand, within Pf1N1B4_4191at 4644.667 kb on - strandat 4644.902 kb on - strandat 4644.902 kb on - strandat 4644.902 kb on - strandat 4644.989 kb on + strandat 4645.089 kb on + strand, within Pf1N1B4_4192at 4645.089 kb on + strand, within Pf1N1B4_4192at 4645.090 kb on - strand, within Pf1N1B4_4192at 4645.135 kb on - strand, within Pf1N1B4_4192at 4645.145 kb on - strand, within Pf1N1B4_4192at 4645.154 kb on - strand, within Pf1N1B4_4192at 4645.762 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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4,642,864 + -0.3
4,642,865 - -0.1
4,642,951 + +2.3
4,642,977 + +1.1
4,643,000 + +0.7
4,643,001 - -0.9
4,643,015 + +0.5
4,643,016 - -1.3
4,643,048 - +1.7
4,643,068 - +0.7
4,643,129 + +0.4
4,643,197 - +0.2
4,643,197 - -0.3
4,643,402 - +1.4
4,643,425 - -0.7
4,643,502 + +0.7
4,643,502 + -0.3
4,643,502 + -0.5
4,643,502 + +0.9
4,643,503 - +1.0
4,643,534 - -0.3
4,643,703 + +0.8
4,643,788 + -0.3
4,643,789 - +0.4
4,643,789 - -0.5
4,643,807 + +0.3
4,643,825 - +0.7
4,643,827 - +0.1
4,643,981 + Pf1N1B4_4191 0.15 +0.0
4,643,981 + Pf1N1B4_4191 0.15 -1.5
4,643,981 + Pf1N1B4_4191 0.15 +0.7
4,644,011 - Pf1N1B4_4191 0.18 +1.1
4,644,182 + Pf1N1B4_4191 0.35 -0.8
4,644,183 - Pf1N1B4_4191 0.35 -1.3
4,644,252 + Pf1N1B4_4191 0.42 +0.7
4,644,573 + Pf1N1B4_4191 0.74 +0.2
4,644,574 - Pf1N1B4_4191 0.74 -0.3
4,644,650 + Pf1N1B4_4191 0.82 +0.1
4,644,650 + Pf1N1B4_4191 0.82 -1.5
4,644,664 + Pf1N1B4_4191 0.83 -0.6
4,644,664 + Pf1N1B4_4191 0.83 -0.5
4,644,664 + Pf1N1B4_4191 0.83 -0.6
4,644,665 - Pf1N1B4_4191 0.83 -0.3
4,644,665 - Pf1N1B4_4191 0.83 -1.6
4,644,665 - Pf1N1B4_4191 0.83 -1.9
4,644,665 - Pf1N1B4_4191 0.83 -0.3
4,644,665 - Pf1N1B4_4191 0.83 +0.7
4,644,665 - Pf1N1B4_4191 0.83 -1.3
4,644,667 - -0.3
4,644,902 - -0.6
4,644,902 - -0.1
4,644,902 - +1.7
4,644,989 + -0.9
4,645,089 + Pf1N1B4_4192 0.21 -0.7
4,645,089 + Pf1N1B4_4192 0.21 +1.4
4,645,090 - Pf1N1B4_4192 0.21 -1.3
4,645,135 - Pf1N1B4_4192 0.26 +1.1
4,645,145 - Pf1N1B4_4192 0.27 +0.3
4,645,154 - Pf1N1B4_4192 0.28 -0.6
4,645,762 - -1.2

Or see this region's nucleotide sequence