Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4176

Experiment: Cisplatin 0.006 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_4174 and Pf1N1B4_4175 overlap by 15 nucleotidesPf1N1B4_4175 and Pf1N1B4_4176 overlap by 11 nucleotidesPf1N1B4_4176 and Pf1N1B4_4177 are separated by 33 nucleotidesPf1N1B4_4177 and Pf1N1B4_4178 are separated by 167 nucleotides Pf1N1B4_4174 - hypothetical protein, at 4,623,579 to 4,623,761 _4174 Pf1N1B4_4175 - Universal stress protein family 5, at 4,623,747 to 4,624,667 _4175 Pf1N1B4_4176 - Alcohol dehydrogenase (EC 1.1.1.1), at 4,624,657 to 4,625,640 _4176 Pf1N1B4_4177 - transcriptional regulator, Crp/Fnr family, at 4,625,674 to 4,626,420 _4177 Pf1N1B4_4178 - Cell division protein FtsH (EC 3.4.24.-), at 4,626,588 to 4,628,375 _4178 Position (kb) 4624 4625 4626Strain fitness (log2 ratio) -2 -1 0 1 2at 4623.667 kb on - strand, within Pf1N1B4_4174at 4623.709 kb on + strand, within Pf1N1B4_4174at 4623.709 kb on + strand, within Pf1N1B4_4174at 4623.792 kb on + strandat 4623.868 kb on + strand, within Pf1N1B4_4175at 4623.868 kb on + strand, within Pf1N1B4_4175at 4623.868 kb on + strand, within Pf1N1B4_4175at 4623.868 kb on + strand, within Pf1N1B4_4175at 4623.869 kb on - strand, within Pf1N1B4_4175at 4623.869 kb on - strandat 4624.306 kb on + strandat 4624.329 kb on + strand, within Pf1N1B4_4175at 4624.329 kb on + strandat 4624.329 kb on + strand, within Pf1N1B4_4175at 4624.329 kb on + strand, within Pf1N1B4_4175at 4624.330 kb on - strand, within Pf1N1B4_4175at 4624.525 kb on - strand, within Pf1N1B4_4175at 4624.525 kb on - strand, within Pf1N1B4_4175at 4624.543 kb on + strandat 4624.544 kb on - strand, within Pf1N1B4_4175at 4624.764 kb on + strand, within Pf1N1B4_4176at 4624.764 kb on + strand, within Pf1N1B4_4176at 4625.036 kb on + strandat 4625.036 kb on + strand, within Pf1N1B4_4176at 4625.036 kb on + strand, within Pf1N1B4_4176at 4625.076 kb on - strand, within Pf1N1B4_4176at 4625.076 kb on - strand, within Pf1N1B4_4176at 4625.276 kb on + strand, within Pf1N1B4_4176at 4625.555 kb on - strandat 4625.643 kb on + strandat 4625.644 kb on - strandat 4625.644 kb on - strandat 4625.644 kb on - strandat 4625.644 kb on - strandat 4625.825 kb on + strand, within Pf1N1B4_4177at 4625.826 kb on - strand, within Pf1N1B4_4177at 4626.056 kb on + strand, within Pf1N1B4_4177at 4626.057 kb on - strand, within Pf1N1B4_4177at 4626.389 kb on + strandat 4626.425 kb on + strandat 4626.453 kb on + strandat 4626.453 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
remove
4,623,667 - Pf1N1B4_4174 0.48 +0.1
4,623,709 + Pf1N1B4_4174 0.71 +0.7
4,623,709 + Pf1N1B4_4174 0.71 -0.8
4,623,792 + +0.5
4,623,868 + Pf1N1B4_4175 0.13 -0.6
4,623,868 + Pf1N1B4_4175 0.13 -0.7
4,623,868 + Pf1N1B4_4175 0.13 -1.0
4,623,868 + Pf1N1B4_4175 0.13 +0.3
4,623,869 - Pf1N1B4_4175 0.13 +1.3
4,623,869 - -0.3
4,624,306 + +2.5
4,624,329 + Pf1N1B4_4175 0.63 -0.3
4,624,329 + +2.5
4,624,329 + Pf1N1B4_4175 0.63 +1.3
4,624,329 + Pf1N1B4_4175 0.63 -0.6
4,624,330 - Pf1N1B4_4175 0.63 +0.3
4,624,525 - Pf1N1B4_4175 0.84 +0.1
4,624,525 - Pf1N1B4_4175 0.84 +2.7
4,624,543 + -0.3
4,624,544 - Pf1N1B4_4175 0.87 +0.2
4,624,764 + Pf1N1B4_4176 0.11 -2.0
4,624,764 + Pf1N1B4_4176 0.11 -0.3
4,625,036 + +0.1
4,625,036 + Pf1N1B4_4176 0.39 +1.6
4,625,036 + Pf1N1B4_4176 0.39 -0.8
4,625,076 - Pf1N1B4_4176 0.43 +0.3
4,625,076 - Pf1N1B4_4176 0.43 -1.9
4,625,276 + Pf1N1B4_4176 0.63 -1.4
4,625,555 - -0.9
4,625,643 + +1.3
4,625,644 - -0.0
4,625,644 - -1.3
4,625,644 - -0.9
4,625,644 - +0.7
4,625,825 + Pf1N1B4_4177 0.20 -0.3
4,625,826 - Pf1N1B4_4177 0.20 -0.9
4,626,056 + Pf1N1B4_4177 0.51 -0.6
4,626,057 - Pf1N1B4_4177 0.51 +0.1
4,626,389 + -0.3
4,626,425 + -0.3
4,626,453 + +0.1
4,626,453 + -0.3

Or see this region's nucleotide sequence