Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_407 and Pf1N1B4_408 overlap by 4 nucleotides Pf1N1B4_408 and Pf1N1B4_409 are separated by 245 nucleotides Pf1N1B4_409 and Pf1N1B4_410 are separated by 9 nucleotides
Pf1N1B4_407 - ADP-ribosylglycohydrolase YegU (EC 3.2.-.-), at 475,906 to 476,904
_407
Pf1N1B4_408 - Transcriptional regulator, GntR family, at 476,901 to 477,578
_408
Pf1N1B4_409 - ABC transporter for D-galactose/L-arabinose, permease component <small>(from data)</small>, at 477,824 to 478,792
_409
Pf1N1B4_410 - ABC transporter for D-galactose/L-arabinose, ATPase component <small>(from data)</small>, at 478,802 to 480,346
_410
Position (kb) 477
478
479 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 476.870 kb on + strand at 476.870 kb on + strand at 476.870 kb on + strand at 476.870 kb on + strand at 476.871 kb on - strand at 476.871 kb on - strand at 476.871 kb on - strand at 476.871 kb on - strand at 476.871 kb on - strand at 476.992 kb on + strand, within Pf1N1B4_408 at 476.992 kb on + strand, within Pf1N1B4_408 at 476.992 kb on + strand, within Pf1N1B4_408 at 476.992 kb on + strand, within Pf1N1B4_408 at 476.992 kb on + strand, within Pf1N1B4_408 at 476.992 kb on + strand, within Pf1N1B4_408 at 476.992 kb on + strand, within Pf1N1B4_408 at 476.992 kb on + strand, within Pf1N1B4_408 at 476.992 kb on + strand, within Pf1N1B4_408 at 476.993 kb on - strand, within Pf1N1B4_408 at 476.993 kb on - strand, within Pf1N1B4_408 at 476.993 kb on - strand, within Pf1N1B4_408 at 476.993 kb on - strand, within Pf1N1B4_408 at 477.106 kb on + strand, within Pf1N1B4_408 at 477.106 kb on + strand, within Pf1N1B4_408 at 477.106 kb on + strand, within Pf1N1B4_408 at 477.106 kb on + strand, within Pf1N1B4_408 at 477.324 kb on - strand, within Pf1N1B4_408 at 477.522 kb on + strand at 477.522 kb on + strand at 477.522 kb on + strand at 477.522 kb on + strand at 477.608 kb on + strand at 477.609 kb on - strand at 477.616 kb on + strand at 477.616 kb on + strand at 477.616 kb on + strand at 477.616 kb on + strand at 477.616 kb on + strand at 477.616 kb on + strand at 477.616 kb on + strand at 477.616 kb on + strand at 477.616 kb on + strand at 477.616 kb on + strand at 477.617 kb on - strand at 477.617 kb on - strand at 477.617 kb on - strand at 477.617 kb on - strand at 477.617 kb on - strand at 477.617 kb on - strand at 477.617 kb on - strand at 477.617 kb on - strand at 477.637 kb on + strand at 477.637 kb on + strand at 477.637 kb on + strand at 477.637 kb on + strand at 477.667 kb on + strand at 477.668 kb on - strand at 477.886 kb on - strand at 477.886 kb on - strand at 477.886 kb on - strand at 477.886 kb on - strand at 477.891 kb on + strand at 477.892 kb on - strand at 478.210 kb on - strand, within Pf1N1B4_409 at 478.210 kb on - strand, within Pf1N1B4_409 at 478.218 kb on + strand, within Pf1N1B4_409 at 478.218 kb on + strand, within Pf1N1B4_409 at 478.219 kb on - strand, within Pf1N1B4_409 at 478.219 kb on - strand, within Pf1N1B4_409 at 478.219 kb on - strand, within Pf1N1B4_409 at 478.219 kb on - strand, within Pf1N1B4_409 at 478.219 kb on - strand, within Pf1N1B4_409 at 478.219 kb on - strand, within Pf1N1B4_409 at 478.356 kb on + strand, within Pf1N1B4_409 at 478.357 kb on - strand, within Pf1N1B4_409 at 478.587 kb on + strand, within Pf1N1B4_409 at 478.587 kb on + strand, within Pf1N1B4_409 at 478.587 kb on + strand, within Pf1N1B4_409 at 478.587 kb on + strand, within Pf1N1B4_409 at 478.588 kb on - strand, within Pf1N1B4_409 at 478.619 kb on - strand, within Pf1N1B4_409 at 478.677 kb on - strand, within Pf1N1B4_409 at 478.792 kb on + strand at 478.792 kb on + strand at 478.792 kb on + strand at 478.792 kb on + strand at 478.792 kb on + strand at 478.793 kb on - strand at 478.793 kb on - strand at 478.793 kb on - strand at 478.930 kb on + strand at 478.931 kb on - strand at 478.993 kb on + strand, within Pf1N1B4_410 at 478.994 kb on - strand, within Pf1N1B4_410 at 479.008 kb on - strand, within Pf1N1B4_410 at 479.027 kb on + strand at 479.027 kb on + strand, within Pf1N1B4_410 at 479.027 kb on + strand, within Pf1N1B4_410 at 479.027 kb on + strand, within Pf1N1B4_410 at 479.027 kb on + strand, within Pf1N1B4_410 at 479.027 kb on + strand, within Pf1N1B4_410 at 479.027 kb on + strand, within Pf1N1B4_410 at 479.028 kb on - strand, within Pf1N1B4_410 at 479.028 kb on - strand, within Pf1N1B4_410 at 479.028 kb on - strand, within Pf1N1B4_410 at 479.028 kb on - strand, within Pf1N1B4_410 at 479.028 kb on - strand, within Pf1N1B4_410 at 479.028 kb on - strand, within Pf1N1B4_410 at 479.028 kb on - strand, within Pf1N1B4_410 at 479.028 kb on - strand, within Pf1N1B4_410 at 479.028 kb on - strand, within Pf1N1B4_410 at 479.127 kb on + strand, within Pf1N1B4_410 at 479.127 kb on + strand, within Pf1N1B4_410 at 479.127 kb on + strand, within Pf1N1B4_410 at 479.127 kb on + strand, within Pf1N1B4_410 at 479.127 kb on + strand, within Pf1N1B4_410 at 479.127 kb on + strand, within Pf1N1B4_410 at 479.127 kb on + strand, within Pf1N1B4_410 at 479.127 kb on + strand, within Pf1N1B4_410 at 479.127 kb on + strand at 479.128 kb on - strand at 479.128 kb on - strand, within Pf1N1B4_410 at 479.128 kb on - strand, within Pf1N1B4_410 at 479.128 kb on - strand, within Pf1N1B4_410 at 479.128 kb on - strand at 479.128 kb on - strand, within Pf1N1B4_410 at 479.577 kb on + strand, within Pf1N1B4_410 at 479.578 kb on - strand, within Pf1N1B4_410 at 479.578 kb on - strand, within Pf1N1B4_410 at 479.578 kb on - strand, within Pf1N1B4_410 at 479.578 kb on - strand, within Pf1N1B4_410 at 479.578 kb on - strand, within Pf1N1B4_410 at 479.578 kb on - strand, within Pf1N1B4_410 at 479.578 kb on - strand, within Pf1N1B4_410 at 479.616 kb on - strand, within Pf1N1B4_410 at 479.616 kb on - strand, within Pf1N1B4_410 at 479.693 kb on - strand, within Pf1N1B4_410 at 479.730 kb on + strand, within Pf1N1B4_410 at 479.730 kb on + strand at 479.731 kb on - strand at 479.731 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 476,870 + -0.5 476,870 + -0.4 476,870 + -1.7 476,870 + -0.3 476,871 - -0.4 476,871 - +0.9 476,871 - +0.5 476,871 - -1.3 476,871 - +0.6 476,992 + Pf1N1B4_408 0.13 -0.1 476,992 + Pf1N1B4_408 0.13 -0.1 476,992 + Pf1N1B4_408 0.13 -0.7 476,992 + Pf1N1B4_408 0.13 +0.7 476,992 + Pf1N1B4_408 0.13 -0.7 476,992 + Pf1N1B4_408 0.13 +1.2 476,992 + Pf1N1B4_408 0.13 -0.2 476,992 + Pf1N1B4_408 0.13 -0.9 476,992 + Pf1N1B4_408 0.13 +2.5 476,993 - Pf1N1B4_408 0.14 -0.4 476,993 - Pf1N1B4_408 0.14 -2.5 476,993 - Pf1N1B4_408 0.14 +0.4 476,993 - Pf1N1B4_408 0.14 +0.1 477,106 + Pf1N1B4_408 0.30 +0.5 477,106 + Pf1N1B4_408 0.30 -0.7 477,106 + Pf1N1B4_408 0.30 +0.9 477,106 + Pf1N1B4_408 0.30 +0.7 477,324 - Pf1N1B4_408 0.62 -1.7 477,522 + -0.1 477,522 + -0.1 477,522 + -0.1 477,522 + -0.1 477,608 + +0.7 477,609 - +1.5 477,616 + -2.4 477,616 + -0.7 477,616 + +0.8 477,616 + +0.1 477,616 + -2.1 477,616 + -1.1 477,616 + -0.9 477,616 + +0.7 477,616 + -1.2 477,616 + +0.2 477,617 - -0.6 477,617 - +0.9 477,617 - -0.1 477,617 - -0.8 477,617 - -2.8 477,617 - +2.2 477,617 - -0.7 477,617 - +0.2 477,637 + +1.2 477,637 + +0.9 477,637 + -1.1 477,637 + +0.3 477,667 + -0.2 477,668 - -1.1 477,886 - +0.5 477,886 - +1.9 477,886 - -1.1 477,886 - -1.7 477,891 + -0.2 477,892 - +0.3 478,210 - Pf1N1B4_409 0.40 +0.3 478,210 - Pf1N1B4_409 0.40 -0.3 478,218 + Pf1N1B4_409 0.41 -0.9 478,218 + Pf1N1B4_409 0.41 +1.1 478,219 - Pf1N1B4_409 0.41 -2.1 478,219 - Pf1N1B4_409 0.41 +1.7 478,219 - Pf1N1B4_409 0.41 +1.1 478,219 - Pf1N1B4_409 0.41 +0.5 478,219 - Pf1N1B4_409 0.41 +0.5 478,219 - Pf1N1B4_409 0.41 +0.3 478,356 + Pf1N1B4_409 0.55 +0.6 478,357 - Pf1N1B4_409 0.55 +1.2 478,587 + Pf1N1B4_409 0.79 +1.3 478,587 + Pf1N1B4_409 0.79 +0.5 478,587 + Pf1N1B4_409 0.79 +0.6 478,587 + Pf1N1B4_409 0.79 -1.1 478,588 - Pf1N1B4_409 0.79 +1.5 478,619 - Pf1N1B4_409 0.82 -0.7 478,677 - Pf1N1B4_409 0.88 +0.1 478,792 + +1.5 478,792 + -1.7 478,792 + -0.9 478,792 + +0.4 478,792 + -0.8 478,793 - +2.5 478,793 - +0.1 478,793 - -0.5 478,930 + +0.1 478,931 - +0.3 478,993 + Pf1N1B4_410 0.12 -0.7 478,994 - Pf1N1B4_410 0.12 +1.5 479,008 - Pf1N1B4_410 0.13 -2.4 479,027 + -1.1 479,027 + Pf1N1B4_410 0.15 -0.1 479,027 + Pf1N1B4_410 0.15 +0.3 479,027 + Pf1N1B4_410 0.15 +0.9 479,027 + Pf1N1B4_410 0.15 +0.2 479,027 + Pf1N1B4_410 0.15 -0.8 479,027 + Pf1N1B4_410 0.15 -1.4 479,028 - Pf1N1B4_410 0.15 -0.7 479,028 - Pf1N1B4_410 0.15 -0.6 479,028 - Pf1N1B4_410 0.15 +0.6 479,028 - Pf1N1B4_410 0.15 -1.4 479,028 - Pf1N1B4_410 0.15 +0.3 479,028 - Pf1N1B4_410 0.15 +0.9 479,028 - Pf1N1B4_410 0.15 +0.6 479,028 - Pf1N1B4_410 0.15 -1.1 479,028 - Pf1N1B4_410 0.15 -1.7 479,127 + Pf1N1B4_410 0.21 -1.1 479,127 + Pf1N1B4_410 0.21 -1.1 479,127 + Pf1N1B4_410 0.21 -0.1 479,127 + Pf1N1B4_410 0.21 -1.7 479,127 + Pf1N1B4_410 0.21 -0.8 479,127 + Pf1N1B4_410 0.21 +0.5 479,127 + Pf1N1B4_410 0.21 -0.3 479,127 + Pf1N1B4_410 0.21 +0.9 479,127 + +0.9 479,128 - +0.3 479,128 - Pf1N1B4_410 0.21 +0.5 479,128 - Pf1N1B4_410 0.21 +0.7 479,128 - Pf1N1B4_410 0.21 +0.5 479,128 - -0.1 479,128 - Pf1N1B4_410 0.21 -2.4 479,577 + Pf1N1B4_410 0.50 +1.5 479,578 - Pf1N1B4_410 0.50 -1.7 479,578 - Pf1N1B4_410 0.50 -0.1 479,578 - Pf1N1B4_410 0.50 +1.2 479,578 - Pf1N1B4_410 0.50 +0.3 479,578 - Pf1N1B4_410 0.50 -0.4 479,578 - Pf1N1B4_410 0.50 -0.7 479,578 - Pf1N1B4_410 0.50 -0.7 479,616 - Pf1N1B4_410 0.53 +1.1 479,616 - Pf1N1B4_410 0.53 -0.1 479,693 - Pf1N1B4_410 0.58 +0.1 479,730 + Pf1N1B4_410 0.60 -0.1 479,730 + -0.1 479,731 - -0.1 479,731 - -0.1
Or see this region's nucleotide sequence