Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3990 and Pf1N1B4_3991 are separated by 145 nucleotides Pf1N1B4_3991 and Pf1N1B4_3992 are separated by 188 nucleotides
Pf1N1B4_3990 - Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 4,434,460 to 4,435,359
_3990
Pf1N1B4_3991 - Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family, at 4,435,505 to 4,435,906
_3991
Pf1N1B4_3992 - Transcriptional regulator, LysR family, at 4,436,095 to 4,437,024
_3992
Position (kb)
4435
4436 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4434.701 kb on + strand, within Pf1N1B4_3990 at 4434.702 kb on - strand, within Pf1N1B4_3990 at 4434.702 kb on - strand at 4434.702 kb on - strand, within Pf1N1B4_3990 at 4434.729 kb on + strand, within Pf1N1B4_3990 at 4435.225 kb on + strand, within Pf1N1B4_3990 at 4435.225 kb on + strand, within Pf1N1B4_3990 at 4435.226 kb on - strand, within Pf1N1B4_3990 at 4435.226 kb on - strand, within Pf1N1B4_3990 at 4435.227 kb on + strand, within Pf1N1B4_3990 at 4435.229 kb on + strand, within Pf1N1B4_3990 at 4435.230 kb on - strand, within Pf1N1B4_3990 at 4435.340 kb on - strand at 4435.375 kb on - strand at 4435.397 kb on - strand at 4435.500 kb on + strand at 4435.500 kb on + strand at 4435.690 kb on - strand, within Pf1N1B4_3991 at 4435.690 kb on - strand, within Pf1N1B4_3991 at 4435.690 kb on - strand, within Pf1N1B4_3991 at 4435.834 kb on - strand, within Pf1N1B4_3991 at 4435.889 kb on - strand at 4435.891 kb on - strand at 4435.891 kb on - strand at 4435.891 kb on - strand at 4435.940 kb on - strand at 4435.940 kb on - strand at 4435.977 kb on + strand at 4435.977 kb on + strand at 4435.977 kb on + strand at 4435.977 kb on + strand at 4435.978 kb on - strand at 4436.020 kb on - strand at 4436.041 kb on + strand at 4436.041 kb on + strand at 4436.041 kb on + strand at 4436.097 kb on - strand at 4436.204 kb on + strand at 4436.256 kb on - strand, within Pf1N1B4_3992 at 4436.256 kb on - strand, within Pf1N1B4_3992 at 4436.336 kb on + strand, within Pf1N1B4_3992 at 4436.337 kb on - strand, within Pf1N1B4_3992 at 4436.337 kb on - strand, within Pf1N1B4_3992 at 4436.399 kb on + strand, within Pf1N1B4_3992 at 4436.428 kb on - strand, within Pf1N1B4_3992 at 4436.451 kb on - strand at 4436.513 kb on + strand, within Pf1N1B4_3992
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 4,434,701 + Pf1N1B4_3990 0.27 +0.4 4,434,702 - Pf1N1B4_3990 0.27 -0.2 4,434,702 - -0.2 4,434,702 - Pf1N1B4_3990 0.27 -0.2 4,434,729 + Pf1N1B4_3990 0.30 -0.1 4,435,225 + Pf1N1B4_3990 0.85 -1.2 4,435,225 + Pf1N1B4_3990 0.85 -2.2 4,435,226 - Pf1N1B4_3990 0.85 -1.6 4,435,226 - Pf1N1B4_3990 0.85 +1.0 4,435,227 + Pf1N1B4_3990 0.85 +1.1 4,435,229 + Pf1N1B4_3990 0.85 +0.5 4,435,230 - Pf1N1B4_3990 0.86 +1.1 4,435,340 - +0.5 4,435,375 - -2.2 4,435,397 - -1.8 4,435,500 + -0.2 4,435,500 + +1.6 4,435,690 - Pf1N1B4_3991 0.46 -1.2 4,435,690 - Pf1N1B4_3991 0.46 -1.6 4,435,690 - Pf1N1B4_3991 0.46 +0.8 4,435,834 - Pf1N1B4_3991 0.82 -1.8 4,435,889 - -0.2 4,435,891 - -1.2 4,435,891 - +0.4 4,435,891 - +2.1 4,435,940 - +2.3 4,435,940 - +0.4 4,435,977 + +0.7 4,435,977 + +0.4 4,435,977 + +0.3 4,435,977 + +0.3 4,435,978 - +2.6 4,436,020 - +0.6 4,436,041 + -0.2 4,436,041 + +0.8 4,436,041 + -0.9 4,436,097 - +1.5 4,436,204 + +1.7 4,436,256 - Pf1N1B4_3992 0.17 -0.5 4,436,256 - Pf1N1B4_3992 0.17 +0.2 4,436,336 + Pf1N1B4_3992 0.26 +0.1 4,436,337 - Pf1N1B4_3992 0.26 -1.4 4,436,337 - Pf1N1B4_3992 0.26 -1.2 4,436,399 + Pf1N1B4_3992 0.33 +1.8 4,436,428 - Pf1N1B4_3992 0.36 -1.2 4,436,451 - +1.8 4,436,513 + Pf1N1B4_3992 0.45 +0.0
Or see this region's nucleotide sequence