Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3861 and Pf1N1B4_3862 are separated by 144 nucleotides Pf1N1B4_3862 and Pf1N1B4_3863 are separated by 67 nucleotides Pf1N1B4_3863 and Pf1N1B4_3864 are separated by 460 nucleotides
Pf1N1B4_3861 - FIG00953368: hypothetical protein, at 4,289,995 to 4,290,738
_3861
Pf1N1B4_3862 - DNA polymerase III subunits gamma and tau (EC 2.7.7.7), at 4,290,883 to 4,292,970
_3862
Pf1N1B4_3863 - FIG000557: hypothetical protein co-occurring with RecR, at 4,293,038 to 4,293,376
_3863
Pf1N1B4_3864 - Recombination protein RecR, at 4,293,837 to 4,294,439
_3864
Position (kb)
4290
4291
4292
4293 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4289.909 kb on + strand at 4289.920 kb on + strand at 4290.018 kb on - strand at 4290.111 kb on + strand, within Pf1N1B4_3861 at 4290.111 kb on + strand, within Pf1N1B4_3861 at 4290.112 kb on - strand, within Pf1N1B4_3861 at 4290.112 kb on - strand, within Pf1N1B4_3861 at 4290.112 kb on - strand, within Pf1N1B4_3861 at 4290.112 kb on - strand at 4290.113 kb on + strand, within Pf1N1B4_3861 at 4290.114 kb on - strand at 4290.114 kb on - strand at 4290.114 kb on - strand, within Pf1N1B4_3861 at 4290.114 kb on - strand, within Pf1N1B4_3861 at 4290.114 kb on - strand, within Pf1N1B4_3861 at 4290.145 kb on + strand, within Pf1N1B4_3861 at 4290.218 kb on + strand, within Pf1N1B4_3861 at 4290.218 kb on + strand, within Pf1N1B4_3861 at 4290.321 kb on - strand, within Pf1N1B4_3861 at 4290.324 kb on + strand, within Pf1N1B4_3861 at 4290.324 kb on + strand at 4290.325 kb on - strand at 4290.325 kb on - strand at 4290.325 kb on - strand, within Pf1N1B4_3861 at 4290.325 kb on - strand, within Pf1N1B4_3861 at 4290.327 kb on - strand at 4290.327 kb on - strand at 4290.327 kb on - strand, within Pf1N1B4_3861 at 4290.443 kb on + strand, within Pf1N1B4_3861 at 4290.443 kb on + strand, within Pf1N1B4_3861 at 4290.771 kb on + strand at 4292.971 kb on + strand at 4292.971 kb on + strand at 4292.971 kb on + strand at 4292.971 kb on + strand at 4293.019 kb on + strand at 4293.019 kb on + strand at 4293.456 kb on - strand at 4293.646 kb on + strand at 4293.646 kb on + strand at 4293.649 kb on + strand at 4293.649 kb on + strand at 4293.760 kb on + strand at 4293.760 kb on + strand at 4293.761 kb on - strand at 4293.773 kb on + strand at 4293.799 kb on + strand at 4293.801 kb on + strand at 4293.819 kb on + strand at 4293.819 kb on + strand at 4293.819 kb on + strand at 4293.819 kb on + strand at 4293.820 kb on - strand at 4293.820 kb on - strand at 4293.820 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 4,289,909 + +1.8 4,289,920 + +1.5 4,290,018 - +0.8 4,290,111 + Pf1N1B4_3861 0.16 -0.2 4,290,111 + Pf1N1B4_3861 0.16 +0.2 4,290,112 - Pf1N1B4_3861 0.16 -0.2 4,290,112 - Pf1N1B4_3861 0.16 -0.2 4,290,112 - Pf1N1B4_3861 0.16 -1.8 4,290,112 - -1.2 4,290,113 + Pf1N1B4_3861 0.16 +1.3 4,290,114 - -0.2 4,290,114 - +1.8 4,290,114 - Pf1N1B4_3861 0.16 +0.0 4,290,114 - Pf1N1B4_3861 0.16 +1.3 4,290,114 - Pf1N1B4_3861 0.16 +0.3 4,290,145 + Pf1N1B4_3861 0.20 +0.2 4,290,218 + Pf1N1B4_3861 0.30 +0.8 4,290,218 + Pf1N1B4_3861 0.30 +0.4 4,290,321 - Pf1N1B4_3861 0.44 -0.8 4,290,324 + Pf1N1B4_3861 0.44 -1.4 4,290,324 + +1.6 4,290,325 - -1.2 4,290,325 - -0.2 4,290,325 - Pf1N1B4_3861 0.44 -0.2 4,290,325 - Pf1N1B4_3861 0.44 -2.2 4,290,327 - -0.2 4,290,327 - +1.8 4,290,327 - Pf1N1B4_3861 0.45 -0.5 4,290,443 + Pf1N1B4_3861 0.60 +0.8 4,290,443 + Pf1N1B4_3861 0.60 +1.6 4,290,771 + -0.2 4,292,971 + +1.2 4,292,971 + +1.0 4,292,971 + +0.8 4,292,971 + +0.4 4,293,019 + +0.8 4,293,019 + +1.9 4,293,456 - +1.6 4,293,646 + +0.2 4,293,646 + -0.4 4,293,649 + -0.2 4,293,649 + +0.8 4,293,760 + -0.2 4,293,760 + -0.5 4,293,761 - -1.8 4,293,773 + -0.2 4,293,799 + +0.7 4,293,801 + -0.2 4,293,819 + +0.5 4,293,819 + +0.8 4,293,819 + -0.2 4,293,819 + +0.3 4,293,820 - -3.1 4,293,820 - -1.8 4,293,820 - -2.5
Or see this region's nucleotide sequence