Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3853 and Pf1N1B4_3854 are separated by 266 nucleotides Pf1N1B4_3854 and Pf1N1B4_3855 are separated by 2 nucleotides Pf1N1B4_3855 and Pf1N1B4_3856 are separated by 258 nucleotides
Pf1N1B4_3853 - Xanthine dehydrogenase iron-sulfur subunit (EC 1.17.1.4) / Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4), at 4,276,046 to 4,277,500
_3853
Pf1N1B4_3854 - Transcriptional regulator, GntR family, at 4,277,767 to 4,278,426
_3854
Pf1N1B4_3855 - Chromosome partition protein smc, at 4,278,429 to 4,281,917
_3855
Pf1N1B4_3856 - Cell division protein ZipA, at 4,282,176 to 4,283,027
_3856
Position (kb)
4278
4279
4280
4281
4282 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4277.483 kb on + strand at 4277.484 kb on - strand at 4277.521 kb on + strand at 4277.522 kb on - strand at 4277.551 kb on - strand at 4277.635 kb on + strand at 4277.653 kb on - strand at 4278.035 kb on - strand, within Pf1N1B4_3854 at 4278.128 kb on - strand, within Pf1N1B4_3854 at 4278.425 kb on - strand at 4278.772 kb on - strand at 4278.772 kb on - strand at 4278.775 kb on - strand at 4278.849 kb on + strand, within Pf1N1B4_3855 at 4278.945 kb on + strand, within Pf1N1B4_3855 at 4278.946 kb on - strand, within Pf1N1B4_3855 at 4279.081 kb on - strand, within Pf1N1B4_3855 at 4279.308 kb on + strand, within Pf1N1B4_3855 at 4280.338 kb on + strand, within Pf1N1B4_3855 at 4280.338 kb on + strand, within Pf1N1B4_3855 at 4280.804 kb on + strand, within Pf1N1B4_3855 at 4280.804 kb on + strand, within Pf1N1B4_3855 at 4280.804 kb on + strand, within Pf1N1B4_3855 at 4280.804 kb on + strand, within Pf1N1B4_3855 at 4281.487 kb on + strand, within Pf1N1B4_3855 at 4281.938 kb on + strand at 4281.961 kb on + strand at 4281.961 kb on + strand at 4282.112 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 4,277,483 + +0.6 4,277,484 - -0.9 4,277,521 + -0.2 4,277,522 - -1.5 4,277,551 - -0.0 4,277,635 + -0.1 4,277,653 - +0.1 4,278,035 - Pf1N1B4_3854 0.41 +0.8 4,278,128 - Pf1N1B4_3854 0.55 +0.8 4,278,425 - -1.4 4,278,772 - +0.5 4,278,772 - -0.2 4,278,775 - -0.2 4,278,849 + Pf1N1B4_3855 0.12 +2.1 4,278,945 + Pf1N1B4_3855 0.15 -0.2 4,278,946 - Pf1N1B4_3855 0.15 -1.2 4,279,081 - Pf1N1B4_3855 0.19 -1.8 4,279,308 + Pf1N1B4_3855 0.25 -1.6 4,280,338 + Pf1N1B4_3855 0.55 -0.5 4,280,338 + Pf1N1B4_3855 0.55 +1.1 4,280,804 + Pf1N1B4_3855 0.68 -0.0 4,280,804 + Pf1N1B4_3855 0.68 -1.5 4,280,804 + Pf1N1B4_3855 0.68 -1.2 4,280,804 + Pf1N1B4_3855 0.68 -0.6 4,281,487 + Pf1N1B4_3855 0.88 -2.2 4,281,938 + +0.1 4,281,961 + -2.7 4,281,961 + -1.2 4,282,112 + +0.8
Or see this region's nucleotide sequence