Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3700 and Pf1N1B4_3701 are separated by 230 nucleotides Pf1N1B4_3701 and Pf1N1B4_3702 are separated by 301 nucleotides
Pf1N1B4_3700 - Putative permease often clustered with de novo purine synthesis, at 4,108,848 to 4,109,921
_3700
Pf1N1B4_3701 - Chromosomal replication initiator protein DnaA, at 4,110,152 to 4,110,856
_3701
Pf1N1B4_3702 - NLP/P60 family protein, at 4,111,158 to 4,111,721
_3702
Position (kb)
4110
4111 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4109.505 kb on + strand, within Pf1N1B4_3700 at 4109.506 kb on - strand, within Pf1N1B4_3700 at 4109.506 kb on - strand at 4109.586 kb on + strand, within Pf1N1B4_3700 at 4109.587 kb on - strand, within Pf1N1B4_3700 at 4109.587 kb on - strand, within Pf1N1B4_3700 at 4109.656 kb on - strand, within Pf1N1B4_3700 at 4109.875 kb on - strand at 4109.875 kb on - strand at 4109.875 kb on - strand at 4109.875 kb on - strand at 4109.875 kb on - strand at 4109.875 kb on - strand at 4109.875 kb on - strand at 4109.875 kb on - strand at 4109.893 kb on - strand at 4109.893 kb on - strand at 4109.893 kb on - strand at 4109.893 kb on - strand at 4109.919 kb on + strand at 4110.896 kb on - strand at 4110.976 kb on + strand at 4110.977 kb on - strand at 4111.000 kb on + strand at 4111.000 kb on + strand at 4111.000 kb on + strand at 4111.635 kb on + strand, within Pf1N1B4_3702 at 4111.719 kb on + strand at 4111.734 kb on + strand at 4111.746 kb on - strand at 4111.753 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 4,109,505 + Pf1N1B4_3700 0.61 -0.2 4,109,506 - Pf1N1B4_3700 0.61 +0.4 4,109,506 - -1.2 4,109,586 + Pf1N1B4_3700 0.69 -1.8 4,109,587 - Pf1N1B4_3700 0.69 -1.5 4,109,587 - Pf1N1B4_3700 0.69 -0.6 4,109,656 - Pf1N1B4_3700 0.75 +1.6 4,109,875 - -0.2 4,109,875 - -3.2 4,109,875 - -1.2 4,109,875 - -1.4 4,109,875 - -4.1 4,109,875 - -2.0 4,109,875 - -1.2 4,109,875 - -2.5 4,109,893 - +1.6 4,109,893 - -2.0 4,109,893 - -1.8 4,109,893 - -0.2 4,109,919 + -0.8 4,110,896 - -1.0 4,110,976 + +0.6 4,110,977 - +0.2 4,111,000 + -0.2 4,111,000 + -1.7 4,111,000 + -1.6 4,111,635 + Pf1N1B4_3702 0.85 -1.0 4,111,719 + +0.8 4,111,734 + +1.3 4,111,746 - +0.7 4,111,753 + +0.6
Or see this region's nucleotide sequence