Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3690 and Pf1N1B4_3691 overlap by 4 nucleotides Pf1N1B4_3691 and Pf1N1B4_3692 are separated by 75 nucleotides Pf1N1B4_3692 and Pf1N1B4_3693 are separated by 145 nucleotides
Pf1N1B4_3690 - FIG00956080: hypothetical protein, at 4,099,695 to 4,100,171
_3690
Pf1N1B4_3691 - FIG00953296: hypothetical protein, at 4,100,168 to 4,100,620
_3691
Pf1N1B4_3692 - Chaperone protein HtpG, at 4,100,696 to 4,102,606
_3692
Pf1N1B4_3693 - Pirin, at 4,102,752 to 4,103,639
_3693
Position (kb)
4100
4101
4102
4103 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 4099.760 kb on - strand, within Pf1N1B4_3690 at 4099.816 kb on - strand, within Pf1N1B4_3690 at 4099.962 kb on + strand, within Pf1N1B4_3690 at 4099.963 kb on - strand, within Pf1N1B4_3690 at 4099.963 kb on - strand at 4099.995 kb on + strand, within Pf1N1B4_3690 at 4099.995 kb on + strand, within Pf1N1B4_3690 at 4099.996 kb on - strand, within Pf1N1B4_3690 at 4100.014 kb on - strand, within Pf1N1B4_3690 at 4100.102 kb on + strand, within Pf1N1B4_3690 at 4100.153 kb on - strand at 4100.338 kb on - strand, within Pf1N1B4_3691 at 4100.674 kb on + strand at 4101.126 kb on + strand, within Pf1N1B4_3692 at 4101.467 kb on + strand, within Pf1N1B4_3692 at 4101.555 kb on - strand, within Pf1N1B4_3692 at 4101.830 kb on + strand, within Pf1N1B4_3692 at 4102.011 kb on - strand, within Pf1N1B4_3692 at 4102.011 kb on - strand, within Pf1N1B4_3692 at 4102.011 kb on - strand, within Pf1N1B4_3692 at 4102.013 kb on + strand, within Pf1N1B4_3692 at 4102.563 kb on - strand at 4102.587 kb on + strand at 4102.754 kb on - strand at 4103.047 kb on + strand at 4103.047 kb on + strand, within Pf1N1B4_3693 at 4103.047 kb on + strand, within Pf1N1B4_3693 at 4103.048 kb on - strand, within Pf1N1B4_3693 at 4103.048 kb on - strand, within Pf1N1B4_3693 at 4103.048 kb on - strand, within Pf1N1B4_3693 at 4103.048 kb on - strand, within Pf1N1B4_3693 at 4103.048 kb on - strand, within Pf1N1B4_3693 at 4103.116 kb on + strand, within Pf1N1B4_3693 at 4103.117 kb on - strand, within Pf1N1B4_3693 at 4103.117 kb on - strand, within Pf1N1B4_3693 at 4103.182 kb on - strand, within Pf1N1B4_3693 at 4103.182 kb on - strand, within Pf1N1B4_3693 at 4103.236 kb on + strand, within Pf1N1B4_3693 at 4103.236 kb on + strand, within Pf1N1B4_3693 at 4103.236 kb on + strand, within Pf1N1B4_3693 at 4103.237 kb on - strand, within Pf1N1B4_3693 at 4103.301 kb on - strand, within Pf1N1B4_3693 at 4103.444 kb on - strand, within Pf1N1B4_3693 at 4103.444 kb on - strand, within Pf1N1B4_3693 at 4103.444 kb on - strand, within Pf1N1B4_3693
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 4,099,760 - Pf1N1B4_3690 0.14 +1.5 4,099,816 - Pf1N1B4_3690 0.25 +0.8 4,099,962 + Pf1N1B4_3690 0.56 -1.0 4,099,963 - Pf1N1B4_3690 0.56 +0.8 4,099,963 - -0.2 4,099,995 + Pf1N1B4_3690 0.63 +1.1 4,099,995 + Pf1N1B4_3690 0.63 -0.4 4,099,996 - Pf1N1B4_3690 0.63 -0.7 4,100,014 - Pf1N1B4_3690 0.67 -0.5 4,100,102 + Pf1N1B4_3690 0.85 -0.2 4,100,153 - +1.3 4,100,338 - Pf1N1B4_3691 0.38 +0.8 4,100,674 + +0.4 4,101,126 + Pf1N1B4_3692 0.23 +1.8 4,101,467 + Pf1N1B4_3692 0.40 +0.8 4,101,555 - Pf1N1B4_3692 0.45 -0.2 4,101,830 + Pf1N1B4_3692 0.59 +0.3 4,102,011 - Pf1N1B4_3692 0.69 -0.2 4,102,011 - Pf1N1B4_3692 0.69 +2.1 4,102,011 - Pf1N1B4_3692 0.69 +1.5 4,102,013 + Pf1N1B4_3692 0.69 +2.3 4,102,563 - -0.2 4,102,587 + +3.9 4,102,754 - -1.8 4,103,047 + -0.8 4,103,047 + Pf1N1B4_3693 0.33 -1.5 4,103,047 + Pf1N1B4_3693 0.33 -1.4 4,103,048 - Pf1N1B4_3693 0.33 +0.4 4,103,048 - Pf1N1B4_3693 0.33 -0.8 4,103,048 - Pf1N1B4_3693 0.33 +1.6 4,103,048 - Pf1N1B4_3693 0.33 -2.5 4,103,048 - Pf1N1B4_3693 0.33 +0.1 4,103,116 + Pf1N1B4_3693 0.41 +0.8 4,103,117 - Pf1N1B4_3693 0.41 -1.2 4,103,117 - Pf1N1B4_3693 0.41 +0.0 4,103,182 - Pf1N1B4_3693 0.48 +1.8 4,103,182 - Pf1N1B4_3693 0.48 +1.4 4,103,236 + Pf1N1B4_3693 0.55 +0.3 4,103,236 + Pf1N1B4_3693 0.55 -0.2 4,103,236 + Pf1N1B4_3693 0.55 -0.2 4,103,237 - Pf1N1B4_3693 0.55 +0.6 4,103,301 - Pf1N1B4_3693 0.62 -0.2 4,103,444 - Pf1N1B4_3693 0.78 -1.2 4,103,444 - Pf1N1B4_3693 0.78 +0.4 4,103,444 - Pf1N1B4_3693 0.78 +1.2
Or see this region's nucleotide sequence