Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3445 and Pf1N1B4_3446 are separated by 19 nucleotides Pf1N1B4_3446 and Pf1N1B4_3447 are separated by 12 nucleotides Pf1N1B4_3447 and Pf1N1B4_3448 are separated by 112 nucleotides
Pf1N1B4_3445 - Succinylarginine dihydrolase (EC 3.5.3.23), at 3,840,799 to 3,842,145
_3445
Pf1N1B4_3446 - Putative GTPases (G3E family), at 3,842,165 to 3,842,455
_3446
Pf1N1B4_3447 - Succinylglutamate desuccinylase (EC 3.5.1.96), at 3,842,468 to 3,843,478
_3447
Pf1N1B4_3448 - 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78), at 3,843,591 to 3,844,100
_3448
Position (kb)
3842
3843
3844 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3841.504 kb on + strand, within Pf1N1B4_3445 at 3841.505 kb on - strand, within Pf1N1B4_3445 at 3841.589 kb on - strand at 3841.589 kb on - strand, within Pf1N1B4_3445 at 3841.723 kb on + strand, within Pf1N1B4_3445 at 3842.173 kb on + strand at 3842.304 kb on + strand, within Pf1N1B4_3446 at 3842.305 kb on - strand, within Pf1N1B4_3446 at 3842.330 kb on + strand, within Pf1N1B4_3446 at 3842.363 kb on - strand, within Pf1N1B4_3446 at 3842.371 kb on - strand, within Pf1N1B4_3446 at 3842.371 kb on - strand, within Pf1N1B4_3446 at 3842.467 kb on + strand at 3842.467 kb on + strand at 3842.467 kb on + strand at 3842.467 kb on + strand at 3842.467 kb on + strand at 3842.468 kb on - strand at 3842.909 kb on + strand, within Pf1N1B4_3447 at 3842.960 kb on + strand, within Pf1N1B4_3447 at 3843.046 kb on + strand, within Pf1N1B4_3447 at 3843.071 kb on + strand, within Pf1N1B4_3447 at 3843.071 kb on + strand, within Pf1N1B4_3447 at 3843.071 kb on + strand, within Pf1N1B4_3447 at 3843.071 kb on + strand, within Pf1N1B4_3447 at 3843.071 kb on + strand at 3843.071 kb on + strand at 3843.071 kb on + strand, within Pf1N1B4_3447 at 3843.072 kb on - strand, within Pf1N1B4_3447 at 3843.072 kb on - strand at 3843.072 kb on - strand, within Pf1N1B4_3447 at 3843.072 kb on - strand, within Pf1N1B4_3447 at 3843.073 kb on + strand, within Pf1N1B4_3447 at 3843.073 kb on + strand, within Pf1N1B4_3447 at 3843.074 kb on - strand, within Pf1N1B4_3447 at 3843.074 kb on - strand, within Pf1N1B4_3447 at 3843.077 kb on + strand, within Pf1N1B4_3447 at 3843.077 kb on + strand, within Pf1N1B4_3447 at 3843.077 kb on + strand, within Pf1N1B4_3447 at 3843.077 kb on + strand at 3843.078 kb on - strand, within Pf1N1B4_3447 at 3843.078 kb on - strand, within Pf1N1B4_3447 at 3843.078 kb on - strand, within Pf1N1B4_3447 at 3843.078 kb on - strand at 3843.078 kb on - strand, within Pf1N1B4_3447 at 3843.277 kb on + strand, within Pf1N1B4_3447 at 3843.335 kb on + strand, within Pf1N1B4_3447 at 3843.335 kb on + strand at 3843.335 kb on + strand, within Pf1N1B4_3447 at 3843.336 kb on - strand, within Pf1N1B4_3447 at 3843.336 kb on - strand, within Pf1N1B4_3447 at 3843.336 kb on - strand, within Pf1N1B4_3447 at 3843.476 kb on + strand at 3843.680 kb on + strand at 3843.680 kb on + strand, within Pf1N1B4_3448 at 3843.681 kb on - strand, within Pf1N1B4_3448 at 3843.681 kb on - strand at 3843.832 kb on + strand, within Pf1N1B4_3448 at 3843.832 kb on + strand, within Pf1N1B4_3448 at 3843.833 kb on - strand, within Pf1N1B4_3448 at 3843.833 kb on - strand, within Pf1N1B4_3448 at 3843.833 kb on - strand, within Pf1N1B4_3448 at 3843.833 kb on - strand, within Pf1N1B4_3448 at 3844.154 kb on - strand at 3844.159 kb on + strand at 3844.194 kb on + strand at 3844.194 kb on + strand at 3844.196 kb on + strand at 3844.196 kb on + strand at 3844.196 kb on + strand at 3844.239 kb on + strand at 3844.240 kb on - strand at 3844.240 kb on - strand at 3844.240 kb on - strand at 3844.240 kb on - strand at 3844.327 kb on + strand at 3844.417 kb on + strand at 3844.418 kb on - strand at 3844.424 kb on + strand at 3844.424 kb on + strand at 3844.424 kb on + strand at 3844.424 kb on + strand at 3844.425 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 3,841,504 + Pf1N1B4_3445 0.52 -0.1 3,841,505 - Pf1N1B4_3445 0.52 +0.9 3,841,589 - -1.1 3,841,589 - Pf1N1B4_3445 0.59 -0.3 3,841,723 + Pf1N1B4_3445 0.69 -0.1 3,842,173 + +0.9 3,842,304 + Pf1N1B4_3446 0.48 +1.2 3,842,305 - Pf1N1B4_3446 0.48 -1.1 3,842,330 + Pf1N1B4_3446 0.57 -0.1 3,842,363 - Pf1N1B4_3446 0.68 -0.7 3,842,371 - Pf1N1B4_3446 0.71 +0.2 3,842,371 - Pf1N1B4_3446 0.71 -0.1 3,842,467 + +0.9 3,842,467 + -2.1 3,842,467 + +1.9 3,842,467 + -1.4 3,842,467 + -0.8 3,842,468 - -2.1 3,842,909 + Pf1N1B4_3447 0.44 -1.7 3,842,960 + Pf1N1B4_3447 0.49 -1.7 3,843,046 + Pf1N1B4_3447 0.57 +0.9 3,843,071 + Pf1N1B4_3447 0.60 -2.4 3,843,071 + Pf1N1B4_3447 0.60 -1.1 3,843,071 + Pf1N1B4_3447 0.60 -1.1 3,843,071 + Pf1N1B4_3447 0.60 -0.7 3,843,071 + -0.1 3,843,071 + +0.9 3,843,071 + Pf1N1B4_3447 0.60 -1.5 3,843,072 - Pf1N1B4_3447 0.60 -2.1 3,843,072 - -1.1 3,843,072 - Pf1N1B4_3447 0.60 -3.3 3,843,072 - Pf1N1B4_3447 0.60 -2.7 3,843,073 + Pf1N1B4_3447 0.60 -3.6 3,843,073 + Pf1N1B4_3447 0.60 -2.4 3,843,074 - Pf1N1B4_3447 0.60 -0.1 3,843,074 - Pf1N1B4_3447 0.60 -1.1 3,843,077 + Pf1N1B4_3447 0.60 -0.1 3,843,077 + Pf1N1B4_3447 0.60 -0.5 3,843,077 + Pf1N1B4_3447 0.60 -0.8 3,843,077 + -0.1 3,843,078 - Pf1N1B4_3447 0.60 -2.9 3,843,078 - Pf1N1B4_3447 0.60 -1.7 3,843,078 - Pf1N1B4_3447 0.60 +0.9 3,843,078 - +0.5 3,843,078 - Pf1N1B4_3447 0.60 +0.3 3,843,277 + Pf1N1B4_3447 0.80 -1.7 3,843,335 + Pf1N1B4_3447 0.86 -1.7 3,843,335 + -1.7 3,843,335 + Pf1N1B4_3447 0.86 +0.5 3,843,336 - Pf1N1B4_3447 0.86 -0.7 3,843,336 - Pf1N1B4_3447 0.86 -2.4 3,843,336 - Pf1N1B4_3447 0.86 -1.1 3,843,476 + +0.8 3,843,680 + -0.8 3,843,680 + Pf1N1B4_3448 0.17 +0.5 3,843,681 - Pf1N1B4_3448 0.18 -0.9 3,843,681 - -0.1 3,843,832 + Pf1N1B4_3448 0.47 +0.3 3,843,832 + Pf1N1B4_3448 0.47 +0.8 3,843,833 - Pf1N1B4_3448 0.47 -2.6 3,843,833 - Pf1N1B4_3448 0.47 -1.1 3,843,833 - Pf1N1B4_3448 0.47 -0.1 3,843,833 - Pf1N1B4_3448 0.47 -1.1 3,844,154 - +1.5 3,844,159 + -2.1 3,844,194 + +0.8 3,844,194 + +1.8 3,844,196 + -0.1 3,844,196 + +0.2 3,844,196 + -0.9 3,844,239 + -0.7 3,844,240 - +3.2 3,844,240 - +1.5 3,844,240 - -0.1 3,844,240 - +0.9 3,844,327 + +0.2 3,844,417 + +0.1 3,844,418 - -0.1 3,844,424 + +0.3 3,844,424 + -0.1 3,844,424 + -0.5 3,844,424 + -0.1 3,844,425 - -0.7
Or see this region's nucleotide sequence