Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3091

Experiment: Cisplatin 0.006 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_3090 and Pf1N1B4_3091 are separated by 67 nucleotidesPf1N1B4_3091 and Pf1N1B4_3092 are separated by 72 nucleotides Pf1N1B4_3090 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267), at 3,472,618 to 3,473,808 _3090 Pf1N1B4_3091 - Membrane-associated zinc metalloprotease, at 3,473,876 to 3,475,213 _3091 Pf1N1B4_3092 - Outer membrane protein assembly factor YaeT precursor, at 3,475,286 to 3,477,676 _3092 Position (kb) 3473 3474 3475 3476Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3473.806 kb on + strandat 3473.818 kb on + strandat 3473.818 kb on + strandat 3473.818 kb on + strandat 3473.818 kb on + strandat 3473.818 kb on + strandat 3473.818 kb on + strandat 3473.818 kb on + strandat 3473.818 kb on + strandat 3473.818 kb on + strandat 3473.818 kb on + strandat 3473.841 kb on + strandat 3473.842 kb on - strandat 3473.858 kb on + strandat 3473.858 kb on + strandat 3473.858 kb on + strandat 3473.859 kb on - strandat 3473.859 kb on - strandat 3473.859 kb on - strandat 3473.873 kb on + strandat 3473.873 kb on + strandat 3473.873 kb on + strandat 3473.873 kb on + strandat 3473.873 kb on + strandat 3473.873 kb on + strandat 3473.873 kb on + strandat 3473.873 kb on + strandat 3473.874 kb on - strandat 3473.874 kb on - strandat 3473.874 kb on - strandat 3473.874 kb on - strandat 3473.874 kb on - strandat 3473.874 kb on - strandat 3473.875 kb on + strandat 3473.875 kb on + strandat 3473.875 kb on + strandat 3473.875 kb on + strandat 3473.875 kb on + strandat 3473.875 kb on + strandat 3473.875 kb on + strandat 3473.875 kb on + strandat 3473.876 kb on - strandat 3473.876 kb on - strandat 3473.876 kb on - strandat 3473.876 kb on - strandat 3473.876 kb on - strandat 3474.125 kb on - strand, within Pf1N1B4_3091at 3474.186 kb on + strand, within Pf1N1B4_3091at 3474.640 kb on - strand, within Pf1N1B4_3091at 3474.656 kb on - strand, within Pf1N1B4_3091at 3474.876 kb on + strand, within Pf1N1B4_3091at 3474.876 kb on + strand, within Pf1N1B4_3091at 3475.013 kb on + strand, within Pf1N1B4_3091at 3475.013 kb on + strand, within Pf1N1B4_3091at 3475.013 kb on + strand, within Pf1N1B4_3091at 3475.021 kb on + strandat 3475.021 kb on + strand, within Pf1N1B4_3091at 3475.085 kb on + strandat 3475.085 kb on + strandat 3475.179 kb on + strandat 3475.179 kb on + strandat 3475.179 kb on + strandat 3475.179 kb on + strandat 3475.179 kb on + strandat 3475.179 kb on + strandat 3475.179 kb on + strandat 3475.179 kb on + strandat 3475.179 kb on + strandat 3475.179 kb on + strandat 3475.179 kb on + strandat 3475.179 kb on + strandat 3475.211 kb on + strandat 3475.211 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
remove
3,473,806 + +0.0
3,473,818 + -1.3
3,473,818 + -2.0
3,473,818 + +1.8
3,473,818 + +2.6
3,473,818 + -0.6
3,473,818 + -0.7
3,473,818 + +0.8
3,473,818 + +0.8
3,473,818 + -1.0
3,473,818 + -2.8
3,473,841 + +0.0
3,473,842 - -1.6
3,473,858 + -1.0
3,473,858 + +1.0
3,473,858 + -1.0
3,473,859 - -0.4
3,473,859 - +0.0
3,473,859 - +0.0
3,473,873 + -2.8
3,473,873 + -1.0
3,473,873 + -2.0
3,473,873 + -1.8
3,473,873 + +1.6
3,473,873 + -1.0
3,473,873 + -0.3
3,473,873 + -2.6
3,473,874 - +0.0
3,473,874 - -1.0
3,473,874 - -0.4
3,473,874 - -1.0
3,473,874 - -1.0
3,473,874 - -3.4
3,473,875 + -1.6
3,473,875 + +1.0
3,473,875 + +0.2
3,473,875 + -2.6
3,473,875 + -1.8
3,473,875 + -1.6
3,473,875 + -0.2
3,473,875 + -1.0
3,473,876 - +0.0
3,473,876 - +0.3
3,473,876 - +1.0
3,473,876 - -2.0
3,473,876 - -1.0
3,474,125 - Pf1N1B4_3091 0.19 -1.4
3,474,186 + Pf1N1B4_3091 0.23 -1.3
3,474,640 - Pf1N1B4_3091 0.57 -3.1
3,474,656 - Pf1N1B4_3091 0.58 -1.8
3,474,876 + Pf1N1B4_3091 0.75 -1.0
3,474,876 + Pf1N1B4_3091 0.75 +0.6
3,475,013 + Pf1N1B4_3091 0.85 -0.7
3,475,013 + Pf1N1B4_3091 0.85 -2.3
3,475,013 + Pf1N1B4_3091 0.85 -2.8
3,475,021 + -1.6
3,475,021 + Pf1N1B4_3091 0.86 +0.0
3,475,085 + -1.6
3,475,085 + -2.3
3,475,179 + -1.8
3,475,179 + -1.6
3,475,179 + -1.0
3,475,179 + -1.0
3,475,179 + -1.6
3,475,179 + -2.6
3,475,179 + -2.3
3,475,179 + +0.3
3,475,179 + -3.9
3,475,179 + -0.7
3,475,179 + -2.3
3,475,179 + -1.3
3,475,211 + +0.0
3,475,211 + -1.6

Or see this region's nucleotide sequence