Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2965 and Pf1N1B4_2966 are separated by 313 nucleotides Pf1N1B4_2966 and Pf1N1B4_2967 are separated by 145 nucleotides Pf1N1B4_2967 and Pf1N1B4_2968 are separated by 24 nucleotides
Pf1N1B4_2965 - hypothetical protein, at 3,326,471 to 3,327,412
_2965
Pf1N1B4_2966 - FIG00958649: hypothetical protein, at 3,327,726 to 3,328,160
_2966
Pf1N1B4_2967 - Alpha/beta hydrolase, at 3,328,306 to 3,328,938
_2967
Pf1N1B4_2968 - Tryptophanyl-tRNA synthetase (EC 6.1.1.2), at 3,328,963 to 3,330,318
_2968
Position (kb)
3327
3328
3329 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3327.612 kb on + strand at 3327.617 kb on + strand at 3327.617 kb on + strand at 3327.617 kb on + strand at 3327.617 kb on + strand at 3327.617 kb on + strand at 3327.617 kb on + strand at 3327.617 kb on + strand at 3327.617 kb on + strand at 3327.617 kb on + strand at 3327.617 kb on + strand at 3327.727 kb on + strand at 3327.727 kb on + strand at 3327.728 kb on - strand at 3328.009 kb on + strand, within Pf1N1B4_2966 at 3328.174 kb on - strand at 3328.174 kb on - strand at 3328.191 kb on - strand at 3328.191 kb on - strand at 3328.191 kb on - strand at 3328.191 kb on - strand at 3328.191 kb on - strand at 3328.191 kb on - strand at 3328.216 kb on + strand at 3328.217 kb on - strand at 3328.217 kb on - strand at 3328.219 kb on - strand at 3328.238 kb on - strand at 3328.238 kb on - strand at 3328.260 kb on + strand at 3328.323 kb on - strand at 3328.323 kb on - strand at 3328.360 kb on + strand at 3328.360 kb on + strand at 3328.361 kb on - strand at 3328.488 kb on + strand, within Pf1N1B4_2967 at 3328.489 kb on - strand, within Pf1N1B4_2967 at 3328.761 kb on + strand, within Pf1N1B4_2967 at 3328.761 kb on + strand, within Pf1N1B4_2967 at 3328.761 kb on + strand, within Pf1N1B4_2967 at 3328.761 kb on + strand, within Pf1N1B4_2967 at 3328.761 kb on + strand, within Pf1N1B4_2967 at 3328.761 kb on + strand, within Pf1N1B4_2967 at 3328.761 kb on + strand, within Pf1N1B4_2967 at 3328.761 kb on + strand, within Pf1N1B4_2967 at 3328.762 kb on - strand, within Pf1N1B4_2967 at 3328.762 kb on - strand, within Pf1N1B4_2967 at 3328.762 kb on - strand, within Pf1N1B4_2967 at 3328.762 kb on - strand, within Pf1N1B4_2967 at 3328.762 kb on - strand, within Pf1N1B4_2967 at 3328.762 kb on - strand, within Pf1N1B4_2967 at 3328.762 kb on - strand, within Pf1N1B4_2967 at 3328.762 kb on - strand, within Pf1N1B4_2967 at 3328.762 kb on - strand, within Pf1N1B4_2967 at 3328.762 kb on - strand, within Pf1N1B4_2967 at 3328.762 kb on - strand, within Pf1N1B4_2967 at 3328.816 kb on + strand, within Pf1N1B4_2967 at 3328.816 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 3,327,612 + -0.6 3,327,617 + -1.2 3,327,617 + -2.7 3,327,617 + -0.1 3,327,617 + -0.9 3,327,617 + +0.0 3,327,617 + +0.4 3,327,617 + +0.4 3,327,617 + -0.2 3,327,617 + +1.1 3,327,617 + +0.1 3,327,727 + +0.4 3,327,727 + +3.3 3,327,728 - +0.4 3,328,009 + Pf1N1B4_2966 0.65 +0.7 3,328,174 - -1.5 3,328,174 - -2.2 3,328,191 - +0.6 3,328,191 - +0.9 3,328,191 - +0.5 3,328,191 - +2.3 3,328,191 - -0.1 3,328,191 - -0.4 3,328,216 + -1.2 3,328,217 - +0.7 3,328,217 - -0.2 3,328,219 - +0.1 3,328,238 - +0.5 3,328,238 - +0.1 3,328,260 + +0.7 3,328,323 - +0.4 3,328,323 - +0.1 3,328,360 + -0.5 3,328,360 + -1.5 3,328,361 - -0.9 3,328,488 + Pf1N1B4_2967 0.29 -1.4 3,328,489 - Pf1N1B4_2967 0.29 +0.5 3,328,761 + Pf1N1B4_2967 0.72 -1.9 3,328,761 + Pf1N1B4_2967 0.72 -0.2 3,328,761 + Pf1N1B4_2967 0.72 +0.1 3,328,761 + Pf1N1B4_2967 0.72 +1.4 3,328,761 + Pf1N1B4_2967 0.72 +0.7 3,328,761 + Pf1N1B4_2967 0.72 +0.1 3,328,761 + Pf1N1B4_2967 0.72 +0.8 3,328,761 + Pf1N1B4_2967 0.72 -1.9 3,328,762 - Pf1N1B4_2967 0.72 +1.9 3,328,762 - Pf1N1B4_2967 0.72 -0.9 3,328,762 - Pf1N1B4_2967 0.72 -0.6 3,328,762 - Pf1N1B4_2967 0.72 +0.8 3,328,762 - Pf1N1B4_2967 0.72 +0.0 3,328,762 - Pf1N1B4_2967 0.72 -2.2 3,328,762 - Pf1N1B4_2967 0.72 -1.5 3,328,762 - Pf1N1B4_2967 0.72 -0.6 3,328,762 - Pf1N1B4_2967 0.72 +0.5 3,328,762 - Pf1N1B4_2967 0.72 +0.4 3,328,762 - Pf1N1B4_2967 0.72 +1.4 3,328,816 + Pf1N1B4_2967 0.81 -0.6 3,328,816 + -0.9
Or see this region's nucleotide sequence