Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2965

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2964 and Pf1N1B4_2965 are separated by 168 nucleotidesPf1N1B4_2965 and Pf1N1B4_2966 are separated by 313 nucleotidesPf1N1B4_2966 and Pf1N1B4_2967 are separated by 145 nucleotides Pf1N1B4_2964 - Outer membrane protein assembly factor YaeT precursor, at 3,325,580 to 3,326,302 _2964 Pf1N1B4_2965 - hypothetical protein, at 3,326,471 to 3,327,412 _2965 Pf1N1B4_2966 - FIG00958649: hypothetical protein, at 3,327,726 to 3,328,160 _2966 Pf1N1B4_2967 - Alpha/beta hydrolase, at 3,328,306 to 3,328,938 _2967 Position (kb) 3326 3327 3328Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3325.536 kb on + strandat 3325.536 kb on + strandat 3325.537 kb on - strandat 3325.537 kb on - strandat 3325.537 kb on - strandat 3325.568 kb on + strandat 3325.603 kb on + strandat 3325.604 kb on - strandat 3325.604 kb on - strandat 3325.655 kb on + strand, within Pf1N1B4_2964at 3325.655 kb on + strand, within Pf1N1B4_2964at 3325.655 kb on + strand, within Pf1N1B4_2964at 3325.655 kb on + strand, within Pf1N1B4_2964at 3325.655 kb on + strand, within Pf1N1B4_2964at 3325.712 kb on + strand, within Pf1N1B4_2964at 3325.712 kb on + strand, within Pf1N1B4_2964at 3325.712 kb on + strand, within Pf1N1B4_2964at 3325.713 kb on - strand, within Pf1N1B4_2964at 3325.713 kb on - strand, within Pf1N1B4_2964at 3325.836 kb on - strand, within Pf1N1B4_2964at 3325.836 kb on - strand, within Pf1N1B4_2964at 3325.836 kb on - strand, within Pf1N1B4_2964at 3325.979 kb on + strand, within Pf1N1B4_2964at 3325.979 kb on + strand, within Pf1N1B4_2964at 3325.980 kb on - strand, within Pf1N1B4_2964at 3326.120 kb on + strand, within Pf1N1B4_2964at 3326.120 kb on + strand, within Pf1N1B4_2964at 3326.120 kb on + strand, within Pf1N1B4_2964at 3326.120 kb on + strand, within Pf1N1B4_2964at 3326.120 kb on + strand, within Pf1N1B4_2964at 3326.121 kb on - strand, within Pf1N1B4_2964at 3326.121 kb on - strand, within Pf1N1B4_2964at 3326.121 kb on - strand, within Pf1N1B4_2964at 3326.121 kb on - strand, within Pf1N1B4_2964at 3326.121 kb on - strand, within Pf1N1B4_2964at 3326.268 kb on - strandat 3326.300 kb on + strandat 3326.300 kb on + strandat 3326.300 kb on + strandat 3326.300 kb on + strandat 3326.300 kb on + strandat 3326.300 kb on + strandat 3326.300 kb on + strandat 3326.300 kb on + strandat 3326.300 kb on + strandat 3326.301 kb on - strandat 3326.301 kb on - strandat 3326.301 kb on - strandat 3326.301 kb on - strandat 3326.324 kb on + strandat 3326.325 kb on - strandat 3326.325 kb on - strandat 3326.417 kb on - strandat 3326.425 kb on + strandat 3326.425 kb on + strandat 3326.425 kb on + strandat 3326.425 kb on + strandat 3326.426 kb on - strandat 3326.426 kb on - strandat 3326.426 kb on - strandat 3326.453 kb on - strandat 3326.453 kb on - strandat 3326.453 kb on - strandat 3326.453 kb on - strandat 3326.453 kb on - strandat 3326.453 kb on - strandat 3326.453 kb on - strandat 3326.453 kb on - strandat 3326.453 kb on - strandat 3327.612 kb on + strandat 3327.617 kb on + strandat 3327.617 kb on + strandat 3327.617 kb on + strandat 3327.617 kb on + strandat 3327.617 kb on + strandat 3327.617 kb on + strandat 3327.617 kb on + strandat 3327.617 kb on + strandat 3327.617 kb on + strandat 3327.617 kb on + strandat 3327.727 kb on + strandat 3327.727 kb on + strandat 3327.728 kb on - strandat 3328.009 kb on + strand, within Pf1N1B4_2966at 3328.174 kb on - strandat 3328.174 kb on - strandat 3328.191 kb on - strandat 3328.191 kb on - strandat 3328.191 kb on - strandat 3328.191 kb on - strandat 3328.191 kb on - strandat 3328.191 kb on - strandat 3328.216 kb on + strandat 3328.217 kb on - strandat 3328.217 kb on - strandat 3328.219 kb on - strandat 3328.238 kb on - strandat 3328.238 kb on - strandat 3328.260 kb on + strandat 3328.323 kb on - strandat 3328.323 kb on - strandat 3328.360 kb on + strandat 3328.360 kb on + strandat 3328.361 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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3,325,536 + +1.5
3,325,536 + +0.7
3,325,537 - +0.1
3,325,537 - -1.5
3,325,537 - -0.5
3,325,568 + +1.7
3,325,603 + +0.1
3,325,604 - -0.9
3,325,604 - +1.4
3,325,655 + Pf1N1B4_2964 0.10 +0.8
3,325,655 + Pf1N1B4_2964 0.10 +0.4
3,325,655 + Pf1N1B4_2964 0.10 +1.1
3,325,655 + Pf1N1B4_2964 0.10 +1.2
3,325,655 + Pf1N1B4_2964 0.10 +1.3
3,325,712 + Pf1N1B4_2964 0.18 -0.5
3,325,712 + Pf1N1B4_2964 0.18 +0.5
3,325,712 + Pf1N1B4_2964 0.18 -1.7
3,325,713 - Pf1N1B4_2964 0.18 +1.9
3,325,713 - Pf1N1B4_2964 0.18 -2.2
3,325,836 - Pf1N1B4_2964 0.35 +2.6
3,325,836 - Pf1N1B4_2964 0.35 +0.5
3,325,836 - Pf1N1B4_2964 0.35 -0.5
3,325,979 + Pf1N1B4_2964 0.55 +1.4
3,325,979 + Pf1N1B4_2964 0.55 +1.7
3,325,980 - Pf1N1B4_2964 0.55 +0.7
3,326,120 + Pf1N1B4_2964 0.75 +0.1
3,326,120 + Pf1N1B4_2964 0.75 -1.5
3,326,120 + Pf1N1B4_2964 0.75 +2.4
3,326,120 + Pf1N1B4_2964 0.75 -0.0
3,326,120 + Pf1N1B4_2964 0.75 -0.9
3,326,121 - Pf1N1B4_2964 0.75 +0.4
3,326,121 - Pf1N1B4_2964 0.75 -0.6
3,326,121 - Pf1N1B4_2964 0.75 +0.7
3,326,121 - Pf1N1B4_2964 0.75 +0.8
3,326,121 - Pf1N1B4_2964 0.75 +2.1
3,326,268 - -1.5
3,326,300 + -0.6
3,326,300 + -1.6
3,326,300 + -0.1
3,326,300 + +1.7
3,326,300 + -0.6
3,326,300 + +1.4
3,326,300 + +1.7
3,326,300 + -0.9
3,326,300 + +1.5
3,326,301 - +0.4
3,326,301 - -1.5
3,326,301 - -1.5
3,326,301 - +0.1
3,326,324 + +0.6
3,326,325 - -0.9
3,326,325 - +0.7
3,326,417 - +0.3
3,326,425 + +0.5
3,326,425 + +0.1
3,326,425 + +0.9
3,326,425 + -1.5
3,326,426 - -2.5
3,326,426 - +0.4
3,326,426 - -1.2
3,326,453 - +0.3
3,326,453 - +1.1
3,326,453 - +0.4
3,326,453 - +1.3
3,326,453 - -1.3
3,326,453 - +0.1
3,326,453 - +0.1
3,326,453 - +1.9
3,326,453 - -0.1
3,327,612 + -0.6
3,327,617 + -1.2
3,327,617 + -2.7
3,327,617 + -0.1
3,327,617 + -0.9
3,327,617 + +0.0
3,327,617 + +0.4
3,327,617 + +0.4
3,327,617 + -0.2
3,327,617 + +1.1
3,327,617 + +0.1
3,327,727 + +0.4
3,327,727 + +3.3
3,327,728 - +0.4
3,328,009 + Pf1N1B4_2966 0.65 +0.7
3,328,174 - -1.5
3,328,174 - -2.2
3,328,191 - +0.6
3,328,191 - +0.9
3,328,191 - +0.5
3,328,191 - +2.3
3,328,191 - -0.1
3,328,191 - -0.4
3,328,216 + -1.2
3,328,217 - +0.7
3,328,217 - -0.2
3,328,219 - +0.1
3,328,238 - +0.5
3,328,238 - +0.1
3,328,260 + +0.7
3,328,323 - +0.4
3,328,323 - +0.1
3,328,360 + -0.5
3,328,360 + -1.5
3,328,361 - -0.9

Or see this region's nucleotide sequence