Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2757

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2755 and Pf1N1B4_2756 are separated by 227 nucleotidesPf1N1B4_2756 and Pf1N1B4_2757 are separated by 67 nucleotidesPf1N1B4_2757 and Pf1N1B4_2758 are separated by 6 nucleotidesPf1N1B4_2758 and Pf1N1B4_2759 are separated by 79 nucleotides Pf1N1B4_2755 - Xanthine/uracil/thiamine/ascorbate permease family protein, at 3,093,711 to 3,095,006 _2755 Pf1N1B4_2756 - FIG00960037: hypothetical protein, at 3,095,234 to 3,095,689 _2756 Pf1N1B4_2757 - DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31, at 3,095,757 to 3,096,308 _2757 Pf1N1B4_2758 - HigA protein (antitoxin to HigB), at 3,096,315 to 3,096,602 _2758 Pf1N1B4_2759 - MFS general substrate transporter, at 3,096,682 to 3,097,920 _2759 Position (kb) 3095 3096 3097Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3094.915 kb on + strandat 3094.915 kb on + strandat 3094.915 kb on + strandat 3094.915 kb on + strandat 3094.915 kb on + strandat 3094.916 kb on - strandat 3094.916 kb on - strandat 3094.916 kb on - strandat 3094.916 kb on - strandat 3094.916 kb on - strandat 3094.916 kb on - strandat 3094.916 kb on - strandat 3094.916 kb on - strandat 3095.042 kb on + strandat 3095.120 kb on + strandat 3095.120 kb on + strandat 3095.120 kb on + strandat 3095.147 kb on + strandat 3095.148 kb on - strandat 3095.148 kb on - strandat 3095.148 kb on - strandat 3095.177 kb on + strandat 3095.178 kb on - strandat 3095.178 kb on - strandat 3095.230 kb on - strandat 3095.230 kb on - strandat 3095.233 kb on + strandat 3095.233 kb on + strandat 3095.233 kb on + strandat 3095.233 kb on + strandat 3095.233 kb on + strandat 3095.233 kb on + strandat 3095.233 kb on + strandat 3095.233 kb on + strandat 3095.233 kb on + strandat 3095.233 kb on + strandat 3095.233 kb on + strandat 3095.233 kb on + strandat 3095.233 kb on + strandat 3095.233 kb on + strandat 3095.233 kb on + strandat 3095.233 kb on + strandat 3095.233 kb on + strandat 3095.234 kb on - strandat 3095.234 kb on - strandat 3095.234 kb on - strandat 3095.234 kb on - strandat 3095.234 kb on - strandat 3095.234 kb on - strandat 3095.234 kb on - strandat 3095.234 kb on - strandat 3095.234 kb on - strandat 3095.234 kb on - strandat 3095.237 kb on + strandat 3095.237 kb on + strandat 3095.237 kb on + strandat 3095.237 kb on + strandat 3095.237 kb on + strandat 3095.237 kb on + strandat 3095.237 kb on + strandat 3095.237 kb on + strandat 3095.237 kb on + strandat 3095.238 kb on - strandat 3095.238 kb on - strandat 3095.238 kb on - strandat 3095.238 kb on - strandat 3095.245 kb on + strandat 3095.248 kb on + strandat 3095.249 kb on - strandat 3095.383 kb on + strand, within Pf1N1B4_2756at 3095.441 kb on + strand, within Pf1N1B4_2756at 3095.441 kb on + strand, within Pf1N1B4_2756at 3095.441 kb on + strand, within Pf1N1B4_2756at 3095.441 kb on + strand, within Pf1N1B4_2756at 3095.441 kb on + strand, within Pf1N1B4_2756at 3095.441 kb on + strand, within Pf1N1B4_2756at 3095.441 kb on + strand, within Pf1N1B4_2756at 3095.441 kb on + strand, within Pf1N1B4_2756at 3095.441 kb on + strand, within Pf1N1B4_2756at 3095.441 kb on + strand, within Pf1N1B4_2756at 3095.441 kb on + strand, within Pf1N1B4_2756at 3095.441 kb on + strand, within Pf1N1B4_2756at 3095.441 kb on + strand, within Pf1N1B4_2756at 3095.442 kb on - strand, within Pf1N1B4_2756at 3095.442 kb on - strandat 3095.442 kb on - strand, within Pf1N1B4_2756at 3095.442 kb on - strandat 3095.442 kb on - strand, within Pf1N1B4_2756at 3095.442 kb on - strand, within Pf1N1B4_2756at 3095.442 kb on - strand, within Pf1N1B4_2756at 3095.442 kb on - strand, within Pf1N1B4_2756at 3095.442 kb on - strand, within Pf1N1B4_2756at 3095.585 kb on + strand, within Pf1N1B4_2756at 3095.585 kb on + strand, within Pf1N1B4_2756at 3095.585 kb on + strand, within Pf1N1B4_2756at 3095.585 kb on + strand, within Pf1N1B4_2756at 3095.585 kb on + strand, within Pf1N1B4_2756at 3095.585 kb on + strand, within Pf1N1B4_2756at 3095.585 kb on + strand, within Pf1N1B4_2756at 3095.585 kb on + strand, within Pf1N1B4_2756at 3095.585 kb on + strand, within Pf1N1B4_2756at 3095.585 kb on + strand, within Pf1N1B4_2756at 3095.585 kb on + strand, within Pf1N1B4_2756at 3095.585 kb on + strand, within Pf1N1B4_2756at 3095.585 kb on + strand, within Pf1N1B4_2756at 3095.585 kb on + strand, within Pf1N1B4_2756at 3095.585 kb on + strand, within Pf1N1B4_2756at 3095.586 kb on - strand, within Pf1N1B4_2756at 3095.586 kb on - strand, within Pf1N1B4_2756at 3095.586 kb on - strand, within Pf1N1B4_2756at 3095.586 kb on - strand, within Pf1N1B4_2756at 3095.635 kb on + strand, within Pf1N1B4_2756at 3095.635 kb on + strandat 3095.636 kb on - strand, within Pf1N1B4_2756at 3095.636 kb on - strand, within Pf1N1B4_2756at 3095.678 kb on + strandat 3095.678 kb on + strandat 3095.678 kb on + strandat 3095.678 kb on + strandat 3095.679 kb on - strandat 3095.679 kb on - strandat 3095.679 kb on - strandat 3095.679 kb on - strandat 3095.679 kb on - strandat 3095.679 kb on - strandat 3095.725 kb on - strandat 3095.765 kb on + strandat 3095.879 kb on + strand, within Pf1N1B4_2757at 3095.879 kb on + strand, within Pf1N1B4_2757at 3095.879 kb on + strand, within Pf1N1B4_2757at 3095.879 kb on + strand, within Pf1N1B4_2757at 3095.879 kb on + strand, within Pf1N1B4_2757at 3095.880 kb on - strand, within Pf1N1B4_2757at 3095.880 kb on - strand, within Pf1N1B4_2757at 3095.880 kb on - strand, within Pf1N1B4_2757at 3095.880 kb on - strand, within Pf1N1B4_2757at 3095.936 kb on - strand, within Pf1N1B4_2757at 3096.379 kb on + strand, within Pf1N1B4_2758at 3096.379 kb on + strand, within Pf1N1B4_2758at 3096.380 kb on - strand, within Pf1N1B4_2758at 3096.380 kb on - strand, within Pf1N1B4_2758at 3096.438 kb on + strand, within Pf1N1B4_2758at 3096.439 kb on - strand, within Pf1N1B4_2758at 3096.552 kb on + strand, within Pf1N1B4_2758at 3096.552 kb on + strand, within Pf1N1B4_2758at 3096.552 kb on + strand, within Pf1N1B4_2758at 3096.552 kb on + strand, within Pf1N1B4_2758at 3096.552 kb on + strand, within Pf1N1B4_2758at 3096.552 kb on + strand, within Pf1N1B4_2758at 3096.552 kb on + strand, within Pf1N1B4_2758at 3096.552 kb on + strand, within Pf1N1B4_2758at 3096.552 kb on + strand, within Pf1N1B4_2758at 3096.553 kb on - strand, within Pf1N1B4_2758at 3096.553 kb on - strand, within Pf1N1B4_2758at 3096.553 kb on - strand, within Pf1N1B4_2758at 3096.553 kb on - strand, within Pf1N1B4_2758at 3096.553 kb on - strand, within Pf1N1B4_2758at 3096.553 kb on - strand, within Pf1N1B4_2758at 3096.625 kb on + strandat 3096.678 kb on + strandat 3096.678 kb on + strandat 3096.679 kb on - strandat 3096.679 kb on - strandat 3096.973 kb on + strand, within Pf1N1B4_2759at 3097.042 kb on + strand, within Pf1N1B4_2759at 3097.043 kb on - strand, within Pf1N1B4_2759at 3097.043 kb on - strand, within Pf1N1B4_2759at 3097.179 kb on + strand, within Pf1N1B4_2759at 3097.180 kb on - strand, within Pf1N1B4_2759at 3097.180 kb on - strand, within Pf1N1B4_2759at 3097.180 kb on - strand, within Pf1N1B4_2759at 3097.180 kb on - strand, within Pf1N1B4_2759

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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3,094,915 + -0.8
3,094,915 + +1.8
3,094,915 + +0.7
3,094,915 + -0.8
3,094,915 + +0.2
3,094,916 - -0.2
3,094,916 - +1.2
3,094,916 - -1.4
3,094,916 - -0.8
3,094,916 - -2.6
3,094,916 - -0.4
3,094,916 - -1.2
3,094,916 - +2.5
3,095,042 + +0.2
3,095,120 + -2.4
3,095,120 + -1.8
3,095,120 + -0.6
3,095,147 + +1.8
3,095,148 - +1.0
3,095,148 - -0.4
3,095,148 - +0.2
3,095,177 + -1.4
3,095,178 - -0.4
3,095,178 - +0.9
3,095,230 - +2.2
3,095,230 - -0.8
3,095,233 + +1.0
3,095,233 + -0.4
3,095,233 + -0.2
3,095,233 + +0.2
3,095,233 + -0.8
3,095,233 + -0.8
3,095,233 + +0.4
3,095,233 + -0.5
3,095,233 + -2.2
3,095,233 + +0.1
3,095,233 + +1.8
3,095,233 + -0.2
3,095,233 + -1.4
3,095,233 + +0.4
3,095,233 + -0.4
3,095,233 + -0.1
3,095,233 + +0.8
3,095,234 - -2.4
3,095,234 - +0.9
3,095,234 - -0.8
3,095,234 - -1.6
3,095,234 - +0.5
3,095,234 - +0.7
3,095,234 - +0.2
3,095,234 - -0.5
3,095,234 - -0.8
3,095,234 - +0.7
3,095,237 + -2.6
3,095,237 + -1.4
3,095,237 + -1.8
3,095,237 + +0.2
3,095,237 + +0.4
3,095,237 + -0.4
3,095,237 + -0.3
3,095,237 + -1.4
3,095,237 + -0.8
3,095,238 - +1.2
3,095,238 - -0.4
3,095,238 - -1.4
3,095,238 - -0.2
3,095,245 + -0.8
3,095,248 + -0.5
3,095,249 - +0.2
3,095,383 + Pf1N1B4_2756 0.33 +2.3
3,095,441 + Pf1N1B4_2756 0.45 +1.6
3,095,441 + Pf1N1B4_2756 0.45 +2.8
3,095,441 + Pf1N1B4_2756 0.45 -3.2
3,095,441 + Pf1N1B4_2756 0.45 -1.2
3,095,441 + Pf1N1B4_2756 0.45 -0.4
3,095,441 + Pf1N1B4_2756 0.45 +1.2
3,095,441 + Pf1N1B4_2756 0.45 +1.2
3,095,441 + Pf1N1B4_2756 0.45 +0.2
3,095,441 + Pf1N1B4_2756 0.45 -0.1
3,095,441 + Pf1N1B4_2756 0.45 -0.2
3,095,441 + Pf1N1B4_2756 0.45 -0.2
3,095,441 + Pf1N1B4_2756 0.45 -2.2
3,095,441 + Pf1N1B4_2756 0.45 -2.2
3,095,442 - Pf1N1B4_2756 0.46 -0.4
3,095,442 - +0.2
3,095,442 - Pf1N1B4_2756 0.46 +1.2
3,095,442 - +0.8
3,095,442 - Pf1N1B4_2756 0.46 -1.8
3,095,442 - Pf1N1B4_2756 0.46 -1.8
3,095,442 - Pf1N1B4_2756 0.46 +1.2
3,095,442 - Pf1N1B4_2756 0.46 -0.2
3,095,442 - Pf1N1B4_2756 0.46 -0.8
3,095,585 + Pf1N1B4_2756 0.77 -1.4
3,095,585 + Pf1N1B4_2756 0.77 +0.5
3,095,585 + Pf1N1B4_2756 0.77 -0.4
3,095,585 + Pf1N1B4_2756 0.77 +2.2
3,095,585 + Pf1N1B4_2756 0.77 -0.8
3,095,585 + Pf1N1B4_2756 0.77 +1.2
3,095,585 + Pf1N1B4_2756 0.77 -0.6
3,095,585 + Pf1N1B4_2756 0.77 -0.8
3,095,585 + Pf1N1B4_2756 0.77 -1.4
3,095,585 + Pf1N1B4_2756 0.77 -0.2
3,095,585 + Pf1N1B4_2756 0.77 -0.2
3,095,585 + Pf1N1B4_2756 0.77 -1.4
3,095,585 + Pf1N1B4_2756 0.77 -0.3
3,095,585 + Pf1N1B4_2756 0.77 -0.1
3,095,585 + Pf1N1B4_2756 0.77 -0.2
3,095,586 - Pf1N1B4_2756 0.77 +2.0
3,095,586 - Pf1N1B4_2756 0.77 +0.6
3,095,586 - Pf1N1B4_2756 0.77 -0.6
3,095,586 - Pf1N1B4_2756 0.77 +1.4
3,095,635 + Pf1N1B4_2756 0.88 +0.5
3,095,635 + +1.8
3,095,636 - Pf1N1B4_2756 0.88 -0.8
3,095,636 - Pf1N1B4_2756 0.88 +1.2
3,095,678 + -0.4
3,095,678 + -2.4
3,095,678 + -0.8
3,095,678 + +1.2
3,095,679 - +0.4
3,095,679 - -0.3
3,095,679 - -0.4
3,095,679 - -0.0
3,095,679 - +0.5
3,095,679 - +2.2
3,095,725 - -1.2
3,095,765 + +0.2
3,095,879 + Pf1N1B4_2757 0.22 -2.4
3,095,879 + Pf1N1B4_2757 0.22 +0.2
3,095,879 + Pf1N1B4_2757 0.22 -1.7
3,095,879 + Pf1N1B4_2757 0.22 +2.5
3,095,879 + Pf1N1B4_2757 0.22 +1.2
3,095,880 - Pf1N1B4_2757 0.22 -1.8
3,095,880 - Pf1N1B4_2757 0.22 -0.1
3,095,880 - Pf1N1B4_2757 0.22 -1.1
3,095,880 - Pf1N1B4_2757 0.22 -1.2
3,095,936 - Pf1N1B4_2757 0.32 -1.2
3,096,379 + Pf1N1B4_2758 0.22 +0.8
3,096,379 + Pf1N1B4_2758 0.22 -0.0
3,096,380 - Pf1N1B4_2758 0.23 +2.2
3,096,380 - Pf1N1B4_2758 0.23 -2.6
3,096,438 + Pf1N1B4_2758 0.43 -0.8
3,096,439 - Pf1N1B4_2758 0.43 +0.8
3,096,552 + Pf1N1B4_2758 0.82 -2.4
3,096,552 + Pf1N1B4_2758 0.82 -0.8
3,096,552 + Pf1N1B4_2758 0.82 +1.8
3,096,552 + Pf1N1B4_2758 0.82 +0.2
3,096,552 + Pf1N1B4_2758 0.82 -1.1
3,096,552 + Pf1N1B4_2758 0.82 +1.2
3,096,552 + Pf1N1B4_2758 0.82 -0.6
3,096,552 + Pf1N1B4_2758 0.82 +0.2
3,096,552 + Pf1N1B4_2758 0.82 +1.8
3,096,553 - Pf1N1B4_2758 0.83 +0.2
3,096,553 - Pf1N1B4_2758 0.83 +2.3
3,096,553 - Pf1N1B4_2758 0.83 +0.8
3,096,553 - Pf1N1B4_2758 0.83 -0.2
3,096,553 - Pf1N1B4_2758 0.83 +0.2
3,096,553 - Pf1N1B4_2758 0.83 +2.9
3,096,625 + -0.6
3,096,678 + -2.6
3,096,678 + -0.1
3,096,679 - +0.8
3,096,679 - +1.2
3,096,973 + Pf1N1B4_2759 0.23 +0.8
3,097,042 + Pf1N1B4_2759 0.29 +0.2
3,097,043 - Pf1N1B4_2759 0.29 +0.7
3,097,043 - Pf1N1B4_2759 0.29 -1.4
3,097,179 + Pf1N1B4_2759 0.40 -0.2
3,097,180 - Pf1N1B4_2759 0.40 +0.4
3,097,180 - Pf1N1B4_2759 0.40 -2.6
3,097,180 - Pf1N1B4_2759 0.40 +0.6
3,097,180 - Pf1N1B4_2759 0.40 -1.4

Or see this region's nucleotide sequence