Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2244

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2243 and Pf1N1B4_2244 are separated by 167 nucleotidesPf1N1B4_2244 and Pf1N1B4_2245 are separated by 369 nucleotides Pf1N1B4_2243 - N-acetylglutamate synthase (EC 2.3.1.1), at 2,558,421 to 2,559,719 _2243 Pf1N1B4_2244 - Taurine-binding periplasmic protein TauA, at 2,559,887 to 2,560,873 _2244 Pf1N1B4_2245 - Outer membrane porin, OprD family, at 2,561,243 to 2,562,601 _2245 Position (kb) 2559 2560 2561Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2559.803 kb on + strandat 2559.889 kb on - strandat 2559.889 kb on - strandat 2559.916 kb on - strandat 2560.144 kb on + strand, within Pf1N1B4_2244at 2560.156 kb on - strand, within Pf1N1B4_2244at 2560.455 kb on + strand, within Pf1N1B4_2244at 2560.456 kb on - strand, within Pf1N1B4_2244at 2560.456 kb on - strand, within Pf1N1B4_2244at 2560.852 kb on + strandat 2560.853 kb on - strandat 2560.857 kb on - strandat 2560.907 kb on - strandat 2560.968 kb on - strandat 2560.983 kb on - strandat 2561.122 kb on - strandat 2561.332 kb on + strandat 2561.332 kb on + strandat 2561.332 kb on + strandat 2561.332 kb on + strandat 2561.333 kb on - strandat 2561.333 kb on - strandat 2561.333 kb on - strandat 2561.333 kb on - strandat 2561.333 kb on - strandat 2561.333 kb on - strandat 2561.347 kb on + strandat 2561.348 kb on - strandat 2561.354 kb on + strandat 2561.354 kb on + strandat 2561.354 kb on + strandat 2561.355 kb on - strandat 2561.355 kb on - strandat 2561.355 kb on - strandat 2561.355 kb on - strandat 2561.355 kb on - strandat 2561.457 kb on - strand, within Pf1N1B4_2245at 2561.548 kb on + strand, within Pf1N1B4_2245at 2561.548 kb on + strand, within Pf1N1B4_2245at 2561.548 kb on + strand, within Pf1N1B4_2245at 2561.548 kb on + strand, within Pf1N1B4_2245at 2561.548 kb on + strand, within Pf1N1B4_2245at 2561.549 kb on - strand, within Pf1N1B4_2245at 2561.555 kb on + strand, within Pf1N1B4_2245at 2561.556 kb on - strand, within Pf1N1B4_2245at 2561.556 kb on - strand, within Pf1N1B4_2245at 2561.568 kb on + strand, within Pf1N1B4_2245at 2561.568 kb on + strand, within Pf1N1B4_2245at 2561.568 kb on + strand, within Pf1N1B4_2245at 2561.569 kb on - strand, within Pf1N1B4_2245at 2561.569 kb on - strandat 2561.569 kb on - strand, within Pf1N1B4_2245at 2561.569 kb on - strand, within Pf1N1B4_2245at 2561.569 kb on - strand, within Pf1N1B4_2245at 2561.602 kb on + strand, within Pf1N1B4_2245at 2561.602 kb on + strand, within Pf1N1B4_2245at 2561.602 kb on + strand, within Pf1N1B4_2245at 2561.807 kb on - strand, within Pf1N1B4_2245

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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2,559,803 + +1.3
2,559,889 - -0.2
2,559,889 - +0.3
2,559,916 - +1.0
2,560,144 + Pf1N1B4_2244 0.26 -1.8
2,560,156 - Pf1N1B4_2244 0.27 +0.1
2,560,455 + Pf1N1B4_2244 0.58 -1.5
2,560,456 - Pf1N1B4_2244 0.58 +0.6
2,560,456 - Pf1N1B4_2244 0.58 -2.5
2,560,852 + +0.4
2,560,853 - -1.7
2,560,857 - -0.7
2,560,907 - -0.1
2,560,968 - -0.0
2,560,983 - +1.5
2,561,122 - +1.9
2,561,332 + +0.6
2,561,332 + +1.0
2,561,332 + -0.7
2,561,332 + -0.6
2,561,333 - +1.1
2,561,333 - +0.8
2,561,333 - -0.0
2,561,333 - +2.6
2,561,333 - -0.1
2,561,333 - +0.0
2,561,347 + +0.5
2,561,348 - -1.7
2,561,354 + -0.9
2,561,354 + -0.7
2,561,354 + -0.7
2,561,355 - +2.5
2,561,355 - +1.6
2,561,355 - +1.9
2,561,355 - +0.3
2,561,355 - +0.8
2,561,457 - Pf1N1B4_2245 0.16 -0.7
2,561,548 + Pf1N1B4_2245 0.22 +2.1
2,561,548 + Pf1N1B4_2245 0.22 -2.3
2,561,548 + Pf1N1B4_2245 0.22 +3.3
2,561,548 + Pf1N1B4_2245 0.22 -1.1
2,561,548 + Pf1N1B4_2245 0.22 -0.1
2,561,549 - Pf1N1B4_2245 0.23 +0.1
2,561,555 + Pf1N1B4_2245 0.23 +0.9
2,561,556 - Pf1N1B4_2245 0.23 +1.4
2,561,556 - Pf1N1B4_2245 0.23 -0.7
2,561,568 + Pf1N1B4_2245 0.24 -0.7
2,561,568 + Pf1N1B4_2245 0.24 -1.3
2,561,568 + Pf1N1B4_2245 0.24 -0.6
2,561,569 - Pf1N1B4_2245 0.24 -2.0
2,561,569 - +1.9
2,561,569 - Pf1N1B4_2245 0.24 +0.3
2,561,569 - Pf1N1B4_2245 0.24 -0.7
2,561,569 - Pf1N1B4_2245 0.24 +2.8
2,561,602 + Pf1N1B4_2245 0.26 -0.3
2,561,602 + Pf1N1B4_2245 0.26 -0.4
2,561,602 + Pf1N1B4_2245 0.26 -0.5
2,561,807 - Pf1N1B4_2245 0.42 +0.9

Or see this region's nucleotide sequence