Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2243 and Pf1N1B4_2244 are separated by 167 nucleotides Pf1N1B4_2244 and Pf1N1B4_2245 are separated by 369 nucleotides
Pf1N1B4_2243 - N-acetylglutamate synthase (EC 2.3.1.1), at 2,558,421 to 2,559,719
_2243
Pf1N1B4_2244 - Taurine-binding periplasmic protein TauA, at 2,559,887 to 2,560,873
_2244
Pf1N1B4_2245 - Outer membrane porin, OprD family, at 2,561,243 to 2,562,601
_2245
Position (kb)
2559
2560
2561 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2559.803 kb on + strand at 2559.889 kb on - strand at 2559.889 kb on - strand at 2559.916 kb on - strand at 2560.144 kb on + strand, within Pf1N1B4_2244 at 2560.156 kb on - strand, within Pf1N1B4_2244 at 2560.455 kb on + strand, within Pf1N1B4_2244 at 2560.456 kb on - strand, within Pf1N1B4_2244 at 2560.456 kb on - strand, within Pf1N1B4_2244 at 2560.852 kb on + strand at 2560.853 kb on - strand at 2560.857 kb on - strand at 2560.907 kb on - strand at 2560.968 kb on - strand at 2560.983 kb on - strand at 2561.122 kb on - strand at 2561.332 kb on + strand at 2561.332 kb on + strand at 2561.332 kb on + strand at 2561.332 kb on + strand at 2561.333 kb on - strand at 2561.333 kb on - strand at 2561.333 kb on - strand at 2561.333 kb on - strand at 2561.333 kb on - strand at 2561.333 kb on - strand at 2561.347 kb on + strand at 2561.348 kb on - strand at 2561.354 kb on + strand at 2561.354 kb on + strand at 2561.354 kb on + strand at 2561.355 kb on - strand at 2561.355 kb on - strand at 2561.355 kb on - strand at 2561.355 kb on - strand at 2561.355 kb on - strand at 2561.457 kb on - strand, within Pf1N1B4_2245 at 2561.548 kb on + strand, within Pf1N1B4_2245 at 2561.548 kb on + strand, within Pf1N1B4_2245 at 2561.548 kb on + strand, within Pf1N1B4_2245 at 2561.548 kb on + strand, within Pf1N1B4_2245 at 2561.548 kb on + strand, within Pf1N1B4_2245 at 2561.549 kb on - strand, within Pf1N1B4_2245 at 2561.555 kb on + strand, within Pf1N1B4_2245 at 2561.556 kb on - strand, within Pf1N1B4_2245 at 2561.556 kb on - strand, within Pf1N1B4_2245 at 2561.568 kb on + strand, within Pf1N1B4_2245 at 2561.568 kb on + strand, within Pf1N1B4_2245 at 2561.568 kb on + strand, within Pf1N1B4_2245 at 2561.569 kb on - strand, within Pf1N1B4_2245 at 2561.569 kb on - strand at 2561.569 kb on - strand, within Pf1N1B4_2245 at 2561.569 kb on - strand, within Pf1N1B4_2245 at 2561.569 kb on - strand, within Pf1N1B4_2245 at 2561.602 kb on + strand, within Pf1N1B4_2245 at 2561.602 kb on + strand, within Pf1N1B4_2245 at 2561.602 kb on + strand, within Pf1N1B4_2245 at 2561.807 kb on - strand, within Pf1N1B4_2245
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 2,559,803 + +1.3 2,559,889 - -0.2 2,559,889 - +0.3 2,559,916 - +1.0 2,560,144 + Pf1N1B4_2244 0.26 -1.8 2,560,156 - Pf1N1B4_2244 0.27 +0.1 2,560,455 + Pf1N1B4_2244 0.58 -1.5 2,560,456 - Pf1N1B4_2244 0.58 +0.6 2,560,456 - Pf1N1B4_2244 0.58 -2.5 2,560,852 + +0.4 2,560,853 - -1.7 2,560,857 - -0.7 2,560,907 - -0.1 2,560,968 - -0.0 2,560,983 - +1.5 2,561,122 - +1.9 2,561,332 + +0.6 2,561,332 + +1.0 2,561,332 + -0.7 2,561,332 + -0.6 2,561,333 - +1.1 2,561,333 - +0.8 2,561,333 - -0.0 2,561,333 - +2.6 2,561,333 - -0.1 2,561,333 - +0.0 2,561,347 + +0.5 2,561,348 - -1.7 2,561,354 + -0.9 2,561,354 + -0.7 2,561,354 + -0.7 2,561,355 - +2.5 2,561,355 - +1.6 2,561,355 - +1.9 2,561,355 - +0.3 2,561,355 - +0.8 2,561,457 - Pf1N1B4_2245 0.16 -0.7 2,561,548 + Pf1N1B4_2245 0.22 +2.1 2,561,548 + Pf1N1B4_2245 0.22 -2.3 2,561,548 + Pf1N1B4_2245 0.22 +3.3 2,561,548 + Pf1N1B4_2245 0.22 -1.1 2,561,548 + Pf1N1B4_2245 0.22 -0.1 2,561,549 - Pf1N1B4_2245 0.23 +0.1 2,561,555 + Pf1N1B4_2245 0.23 +0.9 2,561,556 - Pf1N1B4_2245 0.23 +1.4 2,561,556 - Pf1N1B4_2245 0.23 -0.7 2,561,568 + Pf1N1B4_2245 0.24 -0.7 2,561,568 + Pf1N1B4_2245 0.24 -1.3 2,561,568 + Pf1N1B4_2245 0.24 -0.6 2,561,569 - Pf1N1B4_2245 0.24 -2.0 2,561,569 - +1.9 2,561,569 - Pf1N1B4_2245 0.24 +0.3 2,561,569 - Pf1N1B4_2245 0.24 -0.7 2,561,569 - Pf1N1B4_2245 0.24 +2.8 2,561,602 + Pf1N1B4_2245 0.26 -0.3 2,561,602 + Pf1N1B4_2245 0.26 -0.4 2,561,602 + Pf1N1B4_2245 0.26 -0.5 2,561,807 - Pf1N1B4_2245 0.42 +0.9
Or see this region's nucleotide sequence