Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_215 and Pf1N1B4_216 are separated by 381 nucleotides Pf1N1B4_216 and Pf1N1B4_217 are separated by 132 nucleotides
Pf1N1B4_215 - Pyoverdine chromophore precursor synthetase PvdL, at 267,867 to 275,390
_215
Pf1N1B4_216 - Sigma factor PvdS, controling pyoverdin biosynthesis, at 275,772 to 276,320
_216
Pf1N1B4_217 - Hypothetical protein PvdY @ Siderophore synthetase small component, acetyltransferase, at 276,453 to 277,466
_217
Position (kb) 275
276
277 Strain fitness (log2 ratio) -2
-1
0
1
2 at 274.888 kb on + strand at 274.888 kb on + strand at 274.888 kb on + strand at 275.134 kb on + strand at 275.161 kb on + strand at 275.162 kb on - strand at 275.563 kb on + strand at 275.564 kb on - strand at 275.564 kb on - strand at 275.564 kb on - strand at 275.606 kb on + strand at 275.607 kb on - strand at 275.714 kb on - strand at 275.749 kb on + strand at 275.750 kb on - strand at 275.813 kb on - strand at 275.967 kb on + strand, within Pf1N1B4_216 at 275.967 kb on + strand, within Pf1N1B4_216 at 275.967 kb on + strand, within Pf1N1B4_216 at 275.967 kb on + strand, within Pf1N1B4_216 at 275.967 kb on + strand, within Pf1N1B4_216 at 275.968 kb on - strand, within Pf1N1B4_216 at 276.177 kb on + strand, within Pf1N1B4_216 at 276.177 kb on + strand at 276.346 kb on + strand at 276.363 kb on + strand at 276.363 kb on + strand at 276.364 kb on - strand at 276.368 kb on + strand at 276.368 kb on + strand at 276.368 kb on + strand at 276.369 kb on - strand at 276.392 kb on - strand at 276.392 kb on - strand at 276.640 kb on + strand, within Pf1N1B4_217 at 276.641 kb on - strand, within Pf1N1B4_217 at 276.641 kb on - strand, within Pf1N1B4_217 at 276.743 kb on - strand, within Pf1N1B4_217 at 276.743 kb on - strand, within Pf1N1B4_217 at 276.743 kb on - strand at 276.743 kb on - strand, within Pf1N1B4_217 at 276.743 kb on - strand at 276.743 kb on - strand, within Pf1N1B4_217 at 276.775 kb on + strand, within Pf1N1B4_217 at 276.776 kb on - strand, within Pf1N1B4_217 at 276.776 kb on - strand, within Pf1N1B4_217 at 276.787 kb on + strand, within Pf1N1B4_217 at 276.788 kb on - strand, within Pf1N1B4_217 at 276.788 kb on - strand, within Pf1N1B4_217 at 276.831 kb on - strand at 276.831 kb on - strand, within Pf1N1B4_217 at 276.860 kb on - strand, within Pf1N1B4_217 at 276.961 kb on - strand, within Pf1N1B4_217 at 277.081 kb on + strand, within Pf1N1B4_217
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 274,888 + -0.8 274,888 + -0.6 274,888 + -0.7 275,134 + -0.8 275,161 + +0.8 275,162 - -2.2 275,563 + -2.4 275,564 - -0.8 275,564 - -0.9 275,564 - -1.5 275,606 + -1.8 275,607 - +0.8 275,714 - +1.6 275,749 + +1.4 275,750 - -0.2 275,813 - +1.4 275,967 + Pf1N1B4_216 0.36 +1.8 275,967 + Pf1N1B4_216 0.36 +0.4 275,967 + Pf1N1B4_216 0.36 +2.0 275,967 + Pf1N1B4_216 0.36 +0.5 275,967 + Pf1N1B4_216 0.36 +1.8 275,968 - Pf1N1B4_216 0.36 +0.2 276,177 + Pf1N1B4_216 0.74 +0.2 276,177 + -1.2 276,346 + +0.2 276,363 + +0.4 276,363 + -0.2 276,364 - +1.8 276,368 + -0.2 276,368 + +0.6 276,368 + +1.4 276,369 - -0.2 276,392 - +0.5 276,392 - +0.1 276,640 + Pf1N1B4_217 0.18 -1.0 276,641 - Pf1N1B4_217 0.19 -0.4 276,641 - Pf1N1B4_217 0.19 +0.0 276,743 - Pf1N1B4_217 0.29 +0.9 276,743 - Pf1N1B4_217 0.29 +0.5 276,743 - +2.4 276,743 - Pf1N1B4_217 0.29 +1.8 276,743 - -0.2 276,743 - Pf1N1B4_217 0.29 -1.7 276,775 + Pf1N1B4_217 0.32 -1.2 276,776 - Pf1N1B4_217 0.32 +0.1 276,776 - Pf1N1B4_217 0.32 -1.8 276,787 + Pf1N1B4_217 0.33 +0.5 276,788 - Pf1N1B4_217 0.33 +1.5 276,788 - Pf1N1B4_217 0.33 +1.4 276,831 - -1.2 276,831 - Pf1N1B4_217 0.37 -1.5 276,860 - Pf1N1B4_217 0.40 +0.2 276,961 - Pf1N1B4_217 0.50 +0.6 277,081 + Pf1N1B4_217 0.62 +0.3
Or see this region's nucleotide sequence