Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1612 and Pf1N1B4_1613 overlap by 2 nucleotides Pf1N1B4_1613 and Pf1N1B4_1614 are separated by 205 nucleotides Pf1N1B4_1614 and Pf1N1B4_1615 are separated by 55 nucleotides
Pf1N1B4_1612 - FIG00955429: hypothetical protein, at 1,857,890 to 1,858,330
_1612
Pf1N1B4_1613 - tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207), at 1,858,329 to 1,858,784
_1613
Pf1N1B4_1614 - Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state), at 1,858,990 to 1,859,475
_1614
Pf1N1B4_1615 - Glutaredoxin 3 (Grx3), at 1,859,531 to 1,859,785
_1615
Position (kb)
1858
1859 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1857.626 kb on + strand at 1857.627 kb on - strand at 1857.627 kb on - strand at 1857.653 kb on + strand at 1857.653 kb on + strand at 1857.653 kb on + strand at 1857.654 kb on - strand at 1857.654 kb on - strand at 1857.654 kb on - strand at 1857.654 kb on - strand at 1857.654 kb on - strand at 1857.708 kb on + strand at 1857.708 kb on + strand at 1857.734 kb on + strand at 1857.734 kb on + strand at 1857.734 kb on + strand at 1857.812 kb on + strand at 1857.812 kb on + strand at 1857.812 kb on + strand at 1857.813 kb on - strand at 1857.813 kb on - strand at 1857.813 kb on - strand at 1857.864 kb on + strand at 1857.865 kb on - strand at 1857.891 kb on + strand at 1857.891 kb on + strand at 1857.891 kb on + strand at 1857.891 kb on + strand at 1857.891 kb on + strand at 1857.891 kb on + strand at 1857.891 kb on + strand at 1857.892 kb on - strand at 1857.892 kb on - strand at 1857.892 kb on - strand at 1858.079 kb on + strand, within Pf1N1B4_1612 at 1858.080 kb on - strand, within Pf1N1B4_1612 at 1858.080 kb on - strand, within Pf1N1B4_1612 at 1858.265 kb on + strand, within Pf1N1B4_1612 at 1858.265 kb on + strand, within Pf1N1B4_1612 at 1858.265 kb on + strand, within Pf1N1B4_1612 at 1858.294 kb on + strand at 1858.312 kb on + strand at 1858.312 kb on + strand at 1858.313 kb on - strand at 1858.313 kb on - strand at 1858.489 kb on - strand, within Pf1N1B4_1613 at 1858.489 kb on - strand, within Pf1N1B4_1613 at 1858.489 kb on - strand, within Pf1N1B4_1613 at 1858.563 kb on - strand, within Pf1N1B4_1613 at 1858.752 kb on + strand at 1858.783 kb on - strand at 1859.025 kb on + strand at 1859.025 kb on + strand at 1859.025 kb on + strand at 1859.025 kb on + strand at 1859.025 kb on + strand at 1859.026 kb on - strand at 1859.026 kb on - strand at 1859.026 kb on - strand at 1859.026 kb on - strand at 1859.026 kb on - strand at 1859.026 kb on - strand at 1859.026 kb on - strand at 1859.026 kb on - strand at 1859.026 kb on - strand at 1859.026 kb on - strand at 1859.026 kb on - strand at 1859.026 kb on - strand at 1859.045 kb on + strand, within Pf1N1B4_1614 at 1859.045 kb on + strand, within Pf1N1B4_1614 at 1859.046 kb on - strand, within Pf1N1B4_1614 at 1859.046 kb on - strand, within Pf1N1B4_1614 at 1859.046 kb on - strand, within Pf1N1B4_1614 at 1859.405 kb on + strand at 1859.406 kb on - strand, within Pf1N1B4_1614 at 1859.406 kb on - strand, within Pf1N1B4_1614 at 1859.406 kb on - strand, within Pf1N1B4_1614 at 1859.406 kb on - strand, within Pf1N1B4_1614 at 1859.406 kb on - strand, within Pf1N1B4_1614 at 1859.406 kb on - strand, within Pf1N1B4_1614 at 1859.503 kb on - strand at 1859.504 kb on + strand at 1859.504 kb on + strand at 1859.504 kb on + strand at 1859.504 kb on + strand at 1859.505 kb on - strand at 1859.505 kb on - strand at 1859.505 kb on - strand at 1859.505 kb on - strand at 1859.505 kb on - strand at 1859.505 kb on - strand at 1859.505 kb on - strand at 1859.505 kb on - strand at 1859.514 kb on + strand at 1859.515 kb on - strand at 1859.515 kb on - strand at 1859.523 kb on + strand at 1859.523 kb on + strand at 1859.523 kb on + strand at 1859.524 kb on - strand at 1859.635 kb on + strand, within Pf1N1B4_1615 at 1859.635 kb on + strand, within Pf1N1B4_1615 at 1859.636 kb on - strand, within Pf1N1B4_1615 at 1859.636 kb on - strand, within Pf1N1B4_1615 at 1859.636 kb on - strand, within Pf1N1B4_1615 at 1859.728 kb on - strand, within Pf1N1B4_1615 at 1859.728 kb on - strand, within Pf1N1B4_1615 at 1859.728 kb on - strand, within Pf1N1B4_1615 at 1859.767 kb on - strand at 1859.767 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 1,857,626 + +0.1 1,857,627 - +0.0 1,857,627 - -1.3 1,857,653 + -1.3 1,857,653 + +0.5 1,857,653 + -1.8 1,857,654 - +0.9 1,857,654 - +0.7 1,857,654 - +1.6 1,857,654 - -1.0 1,857,654 - +1.3 1,857,708 + -1.3 1,857,708 + -0.7 1,857,734 + -0.8 1,857,734 + +0.3 1,857,734 + -0.7 1,857,812 + +0.1 1,857,812 + -1.7 1,857,812 + +0.3 1,857,813 - +0.0 1,857,813 - -0.7 1,857,813 - +1.1 1,857,864 + +0.8 1,857,865 - +0.5 1,857,891 + -1.3 1,857,891 + +0.3 1,857,891 + +0.5 1,857,891 + +0.6 1,857,891 + +0.2 1,857,891 + +0.2 1,857,891 + +0.1 1,857,892 - -1.7 1,857,892 - -2.0 1,857,892 - +0.2 1,858,079 + Pf1N1B4_1612 0.43 -1.3 1,858,080 - Pf1N1B4_1612 0.43 +0.3 1,858,080 - Pf1N1B4_1612 0.43 +0.1 1,858,265 + Pf1N1B4_1612 0.85 -0.7 1,858,265 + Pf1N1B4_1612 0.85 -1.5 1,858,265 + Pf1N1B4_1612 0.85 +2.6 1,858,294 + +0.6 1,858,312 + -0.1 1,858,312 + +2.3 1,858,313 - -0.5 1,858,313 - -0.3 1,858,489 - Pf1N1B4_1613 0.35 -0.7 1,858,489 - Pf1N1B4_1613 0.35 -0.3 1,858,489 - Pf1N1B4_1613 0.35 -1.4 1,858,563 - Pf1N1B4_1613 0.51 -0.7 1,858,752 + -0.2 1,858,783 - -2.0 1,859,025 + +1.3 1,859,025 + +1.9 1,859,025 + +2.5 1,859,025 + -1.3 1,859,025 + +0.7 1,859,026 - -0.4 1,859,026 - +0.6 1,859,026 - +0.2 1,859,026 - +0.7 1,859,026 - +2.3 1,859,026 - -0.3 1,859,026 - +1.1 1,859,026 - +0.1 1,859,026 - -0.4 1,859,026 - +0.3 1,859,026 - -2.0 1,859,026 - -0.0 1,859,045 + Pf1N1B4_1614 0.11 +0.3 1,859,045 + Pf1N1B4_1614 0.11 -2.0 1,859,046 - Pf1N1B4_1614 0.12 -1.3 1,859,046 - Pf1N1B4_1614 0.12 -0.7 1,859,046 - Pf1N1B4_1614 0.12 +0.3 1,859,405 + +0.3 1,859,406 - Pf1N1B4_1614 0.86 +0.3 1,859,406 - Pf1N1B4_1614 0.86 -1.7 1,859,406 - Pf1N1B4_1614 0.86 -0.3 1,859,406 - Pf1N1B4_1614 0.86 -0.7 1,859,406 - Pf1N1B4_1614 0.86 +1.7 1,859,406 - Pf1N1B4_1614 0.86 -1.7 1,859,503 - +1.0 1,859,504 + -0.9 1,859,504 + -0.1 1,859,504 + +0.3 1,859,504 + -0.7 1,859,505 - -1.3 1,859,505 - +0.0 1,859,505 - +0.3 1,859,505 - -0.5 1,859,505 - +1.1 1,859,505 - +1.0 1,859,505 - +0.1 1,859,505 - +1.6 1,859,514 + +0.1 1,859,515 - -0.4 1,859,515 - -0.7 1,859,523 + +0.0 1,859,523 + +0.9 1,859,523 + -0.7 1,859,524 - -0.4 1,859,635 + Pf1N1B4_1615 0.41 -0.7 1,859,635 + Pf1N1B4_1615 0.41 +0.3 1,859,636 - Pf1N1B4_1615 0.41 -1.3 1,859,636 - Pf1N1B4_1615 0.41 -1.3 1,859,636 - Pf1N1B4_1615 0.41 +0.5 1,859,728 - Pf1N1B4_1615 0.77 +0.9 1,859,728 - Pf1N1B4_1615 0.77 +0.0 1,859,728 - Pf1N1B4_1615 0.77 +0.1 1,859,767 - +0.3 1,859,767 - +0.3
Or see this region's nucleotide sequence