Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_157 and Pf1N1B4_158 are separated by 37 nucleotides Pf1N1B4_158 and Pf1N1B4_159 are separated by 26 nucleotides Pf1N1B4_159 and Pf1N1B4_160 are separated by 89 nucleotides
Pf1N1B4_157 - ThiJ/PfpI family protein, at 200,059 to 200,745
_157
Pf1N1B4_158 - FIG00456158: hypothetical protein, at 200,783 to 201,112
_158
Pf1N1B4_159 - Putative threonine efflux protein, at 201,139 to 201,768
_159
Pf1N1B4_160 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 201,858 to 203,183
_160
Position (kb) 201
202 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 200.345 kb on - strand, within Pf1N1B4_157 at 200.345 kb on - strand, within Pf1N1B4_157 at 200.362 kb on - strand, within Pf1N1B4_157 at 200.599 kb on + strand, within Pf1N1B4_157 at 200.832 kb on + strand, within Pf1N1B4_158 at 200.833 kb on - strand, within Pf1N1B4_158 at 200.833 kb on - strand at 200.833 kb on - strand, within Pf1N1B4_158 at 200.935 kb on + strand, within Pf1N1B4_158 at 200.935 kb on + strand, within Pf1N1B4_158 at 200.956 kb on - strand at 200.959 kb on - strand, within Pf1N1B4_158 at 200.959 kb on - strand, within Pf1N1B4_158 at 200.959 kb on - strand, within Pf1N1B4_158 at 201.090 kb on + strand at 201.091 kb on - strand at 201.095 kb on - strand at 201.108 kb on + strand at 201.108 kb on + strand at 201.108 kb on + strand at 201.108 kb on + strand at 201.108 kb on + strand at 201.109 kb on - strand at 201.109 kb on - strand at 201.231 kb on + strand at 201.255 kb on + strand, within Pf1N1B4_159 at 201.256 kb on - strand, within Pf1N1B4_159 at 201.392 kb on - strand, within Pf1N1B4_159 at 201.665 kb on + strand, within Pf1N1B4_159 at 201.666 kb on - strand, within Pf1N1B4_159 at 201.797 kb on - strand at 201.797 kb on - strand at 201.801 kb on + strand at 201.801 kb on + strand at 201.840 kb on + strand at 202.002 kb on + strand, within Pf1N1B4_160 at 202.003 kb on - strand at 202.168 kb on + strand, within Pf1N1B4_160 at 202.169 kb on - strand, within Pf1N1B4_160 at 202.280 kb on - strand, within Pf1N1B4_160 at 202.280 kb on - strand, within Pf1N1B4_160 at 202.407 kb on + strand, within Pf1N1B4_160 at 202.534 kb on - strand, within Pf1N1B4_160 at 202.647 kb on + strand, within Pf1N1B4_160 at 202.648 kb on - strand, within Pf1N1B4_160 at 202.685 kb on + strand, within Pf1N1B4_160 at 202.685 kb on + strand, within Pf1N1B4_160 at 202.686 kb on - strand, within Pf1N1B4_160 at 202.686 kb on - strand, within Pf1N1B4_160 at 202.710 kb on + strand, within Pf1N1B4_160 at 202.710 kb on + strand, within Pf1N1B4_160 at 202.711 kb on - strand, within Pf1N1B4_160 at 202.711 kb on - strand, within Pf1N1B4_160 at 202.711 kb on - strand, within Pf1N1B4_160 at 202.711 kb on - strand, within Pf1N1B4_160 at 202.711 kb on - strand, within Pf1N1B4_160 at 202.711 kb on - strand, within Pf1N1B4_160 at 202.711 kb on - strand, within Pf1N1B4_160 at 202.711 kb on - strand, within Pf1N1B4_160 at 202.711 kb on - strand at 202.711 kb on - strand, within Pf1N1B4_160 at 202.711 kb on - strand, within Pf1N1B4_160 at 202.713 kb on - strand, within Pf1N1B4_160
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 200,345 - Pf1N1B4_157 0.42 +1.3 200,345 - Pf1N1B4_157 0.42 +1.5 200,362 - Pf1N1B4_157 0.44 +0.6 200,599 + Pf1N1B4_157 0.79 +0.6 200,832 + Pf1N1B4_158 0.15 -0.6 200,833 - Pf1N1B4_158 0.15 -0.8 200,833 - -0.2 200,833 - Pf1N1B4_158 0.15 -0.5 200,935 + Pf1N1B4_158 0.46 +0.8 200,935 + Pf1N1B4_158 0.46 -0.2 200,956 - +0.4 200,959 - Pf1N1B4_158 0.53 +1.2 200,959 - Pf1N1B4_158 0.53 -0.5 200,959 - Pf1N1B4_158 0.53 -2.5 201,090 + +1.5 201,091 - -0.4 201,095 - +0.5 201,108 + -0.2 201,108 + +1.5 201,108 + +0.4 201,108 + -1.0 201,108 + -0.9 201,109 - -2.5 201,109 - -0.9 201,231 + -2.2 201,255 + Pf1N1B4_159 0.18 -1.3 201,256 - Pf1N1B4_159 0.19 +2.4 201,392 - Pf1N1B4_159 0.40 +0.1 201,665 + Pf1N1B4_159 0.83 -0.5 201,666 - Pf1N1B4_159 0.84 -1.2 201,797 - +1.4 201,797 - +2.6 201,801 + +0.2 201,801 + -0.6 201,840 + +0.4 202,002 + Pf1N1B4_160 0.11 +0.2 202,003 - +0.8 202,168 + Pf1N1B4_160 0.23 +0.6 202,169 - Pf1N1B4_160 0.23 +0.4 202,280 - Pf1N1B4_160 0.32 -0.2 202,280 - Pf1N1B4_160 0.32 -2.5 202,407 + Pf1N1B4_160 0.41 +0.8 202,534 - Pf1N1B4_160 0.51 +0.8 202,647 + Pf1N1B4_160 0.60 -1.2 202,648 - Pf1N1B4_160 0.60 +0.2 202,685 + Pf1N1B4_160 0.62 -3.0 202,685 + Pf1N1B4_160 0.62 +0.6 202,686 - Pf1N1B4_160 0.62 -1.0 202,686 - Pf1N1B4_160 0.62 +1.3 202,710 + Pf1N1B4_160 0.64 +1.4 202,710 + Pf1N1B4_160 0.64 +0.6 202,711 - Pf1N1B4_160 0.64 +0.2 202,711 - Pf1N1B4_160 0.64 -0.6 202,711 - Pf1N1B4_160 0.64 -0.4 202,711 - Pf1N1B4_160 0.64 +0.8 202,711 - Pf1N1B4_160 0.64 +0.6 202,711 - Pf1N1B4_160 0.64 -1.5 202,711 - Pf1N1B4_160 0.64 -0.8 202,711 - Pf1N1B4_160 0.64 -0.2 202,711 - -0.2 202,711 - Pf1N1B4_160 0.64 +0.1 202,711 - Pf1N1B4_160 0.64 -0.8 202,713 - Pf1N1B4_160 0.64 -0.5
Or see this region's nucleotide sequence