Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS02925

Experiment: Temperature shift 30_to_21; with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS02915 and PFLU_RS02920 overlap by 4 nucleotidesPFLU_RS02920 and PFLU_RS02925 overlap by 4 nucleotidesPFLU_RS02925 and PFLU_RS02930 are separated by 43 nucleotides PFLU_RS02915: PFLU_RS02915 - iron ABC transporter permease, at 671,746 to 672,756 _RS02915 PFLU_RS02920: PFLU_RS02920 - ABC transporter substrate-binding protein, at 672,753 to 673,700 _RS02920 PFLU_RS02925: PFLU_RS02925 - ABC transporter ATP-binding protein, at 673,697 to 674,479 _RS02925 PFLU_RS02930: PFLU_RS02930 - TonB-dependent receptor, at 674,523 to 676,631 _RS02930 Position (kb) 673 674 675Strain fitness (log2 ratio) -2 -1 0 1 2 3at 672.826 kb on + strandat 672.826 kb on + strandat 672.826 kb on + strandat 672.826 kb on + strandat 672.827 kb on - strandat 672.928 kb on + strand, within PFLU_RS02920at 672.928 kb on + strand, within PFLU_RS02920at 672.928 kb on + strand, within PFLU_RS02920at 673.231 kb on + strand, within PFLU_RS02920at 673.231 kb on + strand, within PFLU_RS02920at 673.231 kb on + strand, within PFLU_RS02920at 673.231 kb on + strand, within PFLU_RS02920at 673.231 kb on + strand, within PFLU_RS02920at 673.231 kb on + strand, within PFLU_RS02920at 673.231 kb on + strand, within PFLU_RS02920at 673.231 kb on + strand, within PFLU_RS02920at 673.231 kb on + strand, within PFLU_RS02920at 673.231 kb on + strand, within PFLU_RS02920at 673.231 kb on + strand, within PFLU_RS02920at 673.231 kb on + strand, within PFLU_RS02920at 673.232 kb on - strand, within PFLU_RS02920at 673.232 kb on - strand, within PFLU_RS02920at 673.232 kb on - strand, within PFLU_RS02920at 673.232 kb on - strand, within PFLU_RS02920at 673.232 kb on - strand, within PFLU_RS02920at 673.232 kb on - strand, within PFLU_RS02920at 673.232 kb on - strand, within PFLU_RS02920at 673.232 kb on - strand, within PFLU_RS02920at 673.232 kb on - strand, within PFLU_RS02920at 673.232 kb on - strand, within PFLU_RS02920at 673.232 kb on - strand, within PFLU_RS02920at 673.232 kb on - strand, within PFLU_RS02920at 673.232 kb on - strand, within PFLU_RS02920at 673.232 kb on - strand, within PFLU_RS02920at 673.232 kb on - strand, within PFLU_RS02920at 673.232 kb on - strand, within PFLU_RS02920at 673.232 kb on - strand, within PFLU_RS02920at 673.232 kb on - strand, within PFLU_RS02920at 673.294 kb on + strand, within PFLU_RS02920at 673.294 kb on + strand, within PFLU_RS02920at 673.295 kb on - strand, within PFLU_RS02920at 673.295 kb on - strand, within PFLU_RS02920at 673.295 kb on - strand, within PFLU_RS02920at 673.295 kb on - strand, within PFLU_RS02920at 673.295 kb on - strand, within PFLU_RS02920at 673.295 kb on - strand, within PFLU_RS02920at 673.358 kb on - strand, within PFLU_RS02920at 673.358 kb on - strand, within PFLU_RS02920at 673.417 kb on + strand, within PFLU_RS02920at 673.418 kb on - strand, within PFLU_RS02920at 673.498 kb on + strand, within PFLU_RS02920at 673.627 kb on + strandat 673.728 kb on + strandat 673.848 kb on + strand, within PFLU_RS02925at 673.848 kb on + strand, within PFLU_RS02925at 673.849 kb on - strand, within PFLU_RS02925at 673.849 kb on - strand, within PFLU_RS02925at 673.849 kb on - strand, within PFLU_RS02925at 673.849 kb on - strand, within PFLU_RS02925at 673.849 kb on - strand, within PFLU_RS02925at 674.288 kb on + strand, within PFLU_RS02925at 674.288 kb on + strand, within PFLU_RS02925at 674.288 kb on + strand, within PFLU_RS02925at 674.288 kb on + strand, within PFLU_RS02925at 674.288 kb on + strand, within PFLU_RS02925at 674.289 kb on - strand, within PFLU_RS02925at 674.289 kb on - strand, within PFLU_RS02925at 674.289 kb on - strand, within PFLU_RS02925at 674.289 kb on - strand, within PFLU_RS02925at 674.289 kb on - strand, within PFLU_RS02925at 674.524 kb on + strandat 674.524 kb on + strandat 674.524 kb on + strandat 674.524 kb on + strandat 674.524 kb on + strandat 674.524 kb on + strandat 674.525 kb on - strandat 674.525 kb on - strandat 674.525 kb on - strandat 674.525 kb on - strandat 674.525 kb on - strandat 674.533 kb on + strandat 674.533 kb on + strandat 674.533 kb on + strandat 674.533 kb on + strandat 674.533 kb on + strandat 674.533 kb on + strandat 674.533 kb on + strandat 674.534 kb on - strandat 674.534 kb on - strandat 674.534 kb on - strandat 674.534 kb on - strandat 674.534 kb on - strandat 674.534 kb on - strandat 674.593 kb on + strandat 674.594 kb on - strandat 674.594 kb on - strandat 674.608 kb on + strandat 674.608 kb on + strandat 674.608 kb on + strandat 674.608 kb on + strandat 674.608 kb on + strandat 674.609 kb on - strandat 674.609 kb on - strandat 674.609 kb on - strandat 674.609 kb on - strandat 674.609 kb on - strandat 674.609 kb on - strandat 674.695 kb on + strandat 674.696 kb on - strandat 674.746 kb on + strand, within PFLU_RS02930at 674.746 kb on + strand, within PFLU_RS02930at 674.746 kb on + strand, within PFLU_RS02930at 674.747 kb on - strand, within PFLU_RS02930at 674.747 kb on - strand, within PFLU_RS02930at 674.887 kb on + strand, within PFLU_RS02930at 675.049 kb on + strand, within PFLU_RS02930at 675.193 kb on + strand, within PFLU_RS02930at 675.193 kb on + strand, within PFLU_RS02930at 675.193 kb on + strand, within PFLU_RS02930at 675.193 kb on + strand, within PFLU_RS02930at 675.202 kb on + strand, within PFLU_RS02930at 675.202 kb on + strand, within PFLU_RS02930at 675.203 kb on - strand, within PFLU_RS02930at 675.203 kb on - strand, within PFLU_RS02930at 675.316 kb on + strand, within PFLU_RS02930at 675.317 kb on - strand, within PFLU_RS02930at 675.317 kb on - strand, within PFLU_RS02930at 675.395 kb on + strand, within PFLU_RS02930at 675.396 kb on - strand, within PFLU_RS02930at 675.396 kb on - strand, within PFLU_RS02930at 675.396 kb on - strand, within PFLU_RS02930

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Per-strain Table

Position Strand Gene LocusTag Fraction Temperature shift 30_to_21; with MOPS
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672,826 + -1.1
672,826 + +1.6
672,826 + +0.4
672,826 + +1.3
672,827 - +3.4
672,928 + PFLU_RS02920 0.18 -0.7
672,928 + PFLU_RS02920 0.18 -0.1
672,928 + PFLU_RS02920 0.18 +1.5
673,231 + PFLU_RS02920 0.50 -0.0
673,231 + PFLU_RS02920 0.50 +0.9
673,231 + PFLU_RS02920 0.50 +0.1
673,231 + PFLU_RS02920 0.50 -0.0
673,231 + PFLU_RS02920 0.50 -1.0
673,231 + PFLU_RS02920 0.50 +0.5
673,231 + PFLU_RS02920 0.50 -0.5
673,231 + PFLU_RS02920 0.50 -1.3
673,231 + PFLU_RS02920 0.50 +0.3
673,231 + PFLU_RS02920 0.50 +1.0
673,231 + PFLU_RS02920 0.50 +0.5
673,231 + PFLU_RS02920 0.50 +0.8
673,232 - PFLU_RS02920 0.51 +0.1
673,232 - PFLU_RS02920 0.51 -0.1
673,232 - PFLU_RS02920 0.51 -1.0
673,232 - PFLU_RS02920 0.51 +0.1
673,232 - PFLU_RS02920 0.51 -1.7
673,232 - PFLU_RS02920 0.51 +0.1
673,232 - PFLU_RS02920 0.51 -0.1
673,232 - PFLU_RS02920 0.51 +1.1
673,232 - PFLU_RS02920 0.51 +0.2
673,232 - PFLU_RS02920 0.51 -0.1
673,232 - PFLU_RS02920 0.51 +0.3
673,232 - PFLU_RS02920 0.51 +0.3
673,232 - PFLU_RS02920 0.51 -0.6
673,232 - PFLU_RS02920 0.51 +0.1
673,232 - PFLU_RS02920 0.51 +0.3
673,232 - PFLU_RS02920 0.51 -1.5
673,232 - PFLU_RS02920 0.51 +0.5
673,232 - PFLU_RS02920 0.51 +1.6
673,294 + PFLU_RS02920 0.57 -0.5
673,294 + PFLU_RS02920 0.57 +0.3
673,295 - PFLU_RS02920 0.57 +0.2
673,295 - PFLU_RS02920 0.57 +0.9
673,295 - PFLU_RS02920 0.57 +0.9
673,295 - PFLU_RS02920 0.57 +1.1
673,295 - PFLU_RS02920 0.57 +0.1
673,295 - PFLU_RS02920 0.57 -1.5
673,358 - PFLU_RS02920 0.64 +0.4
673,358 - PFLU_RS02920 0.64 +0.2
673,417 + PFLU_RS02920 0.70 -0.6
673,418 - PFLU_RS02920 0.70 +0.9
673,498 + PFLU_RS02920 0.79 -2.5
673,627 + +0.4
673,728 + -1.5
673,848 + PFLU_RS02925 0.19 -0.2
673,848 + PFLU_RS02925 0.19 +0.7
673,849 - PFLU_RS02925 0.19 -2.2
673,849 - PFLU_RS02925 0.19 -0.2
673,849 - PFLU_RS02925 0.19 +0.9
673,849 - PFLU_RS02925 0.19 -1.2
673,849 - PFLU_RS02925 0.19 +0.7
674,288 + PFLU_RS02925 0.75 +0.5
674,288 + PFLU_RS02925 0.75 +0.1
674,288 + PFLU_RS02925 0.75 +0.6
674,288 + PFLU_RS02925 0.75 +0.9
674,288 + PFLU_RS02925 0.75 +0.1
674,289 - PFLU_RS02925 0.76 +0.4
674,289 - PFLU_RS02925 0.76 -0.3
674,289 - PFLU_RS02925 0.76 +2.1
674,289 - PFLU_RS02925 0.76 -0.7
674,289 - PFLU_RS02925 0.76 -1.9
674,524 + +0.5
674,524 + +1.0
674,524 + -0.4
674,524 + -1.6
674,524 + +0.0
674,524 + +1.3
674,525 - +0.0
674,525 - +0.9
674,525 - -0.8
674,525 - -0.1
674,525 - -0.5
674,533 + +0.4
674,533 + +0.2
674,533 + +0.3
674,533 + -0.8
674,533 + +0.5
674,533 + -1.1
674,533 + +1.7
674,534 - +0.0
674,534 - -0.9
674,534 - +1.9
674,534 - -0.2
674,534 - +0.9
674,534 - +1.4
674,593 + +0.3
674,594 - +0.3
674,594 - -0.9
674,608 + -0.5
674,608 + -0.5
674,608 + -0.9
674,608 + -0.5
674,608 + +0.1
674,609 - -0.1
674,609 - -1.1
674,609 - +0.4
674,609 - -0.7
674,609 - +0.5
674,609 - -0.4
674,695 + +1.6
674,696 - -0.4
674,746 + PFLU_RS02930 0.11 -1.1
674,746 + PFLU_RS02930 0.11 +0.4
674,746 + PFLU_RS02930 0.11 -1.5
674,747 - PFLU_RS02930 0.11 +0.3
674,747 - PFLU_RS02930 0.11 +0.4
674,887 + PFLU_RS02930 0.17 +0.2
675,049 + PFLU_RS02930 0.25 +1.1
675,193 + PFLU_RS02930 0.32 +0.5
675,193 + PFLU_RS02930 0.32 +0.3
675,193 + PFLU_RS02930 0.32 +1.0
675,193 + PFLU_RS02930 0.32 -0.5
675,202 + PFLU_RS02930 0.32 -0.6
675,202 + PFLU_RS02930 0.32 +0.3
675,203 - PFLU_RS02930 0.32 +1.3
675,203 - PFLU_RS02930 0.32 +0.6
675,316 + PFLU_RS02930 0.38 +0.9
675,317 - PFLU_RS02930 0.38 -1.0
675,317 - PFLU_RS02930 0.38 -0.9
675,395 + PFLU_RS02930 0.41 -0.2
675,396 - PFLU_RS02930 0.41 -0.8
675,396 - PFLU_RS02930 0.41 -1.0
675,396 - PFLU_RS02930 0.41 +0.3

Or see this region's nucleotide sequence