Experiment: Phosphomycin 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_695 and Ac3H11_696 overlap by 4 nucleotides Ac3H11_696 and Ac3H11_697 overlap by 4 nucleotides Ac3H11_697 and Ac3H11_698 are separated by 18 nucleotides
Ac3H11_695 - Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1), at 52,097 to 53,164
_695
Ac3H11_696 - Dipeptide transport system permease protein DppC (TC 3.A.1.5.2), at 53,161 to 54,024
_696
Ac3H11_697 - Dipeptide transport system permease protein DppB (TC 3.A.1.5.2), at 54,021 to 54,971
_697
Ac3H11_698 - Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2); Putative hemin-binding lipoprotein, at 54,990 to 56,576
_698
Position (kb) 53
54
55 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 52.307 kb on + strand, within Ac3H11_695 at 52.307 kb on + strand, within Ac3H11_695 at 52.307 kb on + strand, within Ac3H11_695 at 52.307 kb on + strand, within Ac3H11_695 at 52.307 kb on + strand, within Ac3H11_695 at 52.308 kb on - strand, within Ac3H11_695 at 52.308 kb on - strand, within Ac3H11_695 at 52.308 kb on - strand, within Ac3H11_695 at 52.308 kb on - strand, within Ac3H11_695 at 52.377 kb on + strand, within Ac3H11_695 at 52.377 kb on + strand, within Ac3H11_695 at 52.377 kb on + strand, within Ac3H11_695 at 52.377 kb on + strand, within Ac3H11_695 at 52.378 kb on - strand, within Ac3H11_695 at 52.378 kb on - strand, within Ac3H11_695 at 52.440 kb on + strand, within Ac3H11_695 at 52.441 kb on - strand, within Ac3H11_695 at 52.441 kb on - strand, within Ac3H11_695 at 52.465 kb on - strand, within Ac3H11_695 at 53.164 kb on + strand at 53.165 kb on - strand at 53.288 kb on + strand, within Ac3H11_696 at 53.384 kb on + strand, within Ac3H11_696 at 53.385 kb on - strand, within Ac3H11_696 at 53.556 kb on - strand, within Ac3H11_696 at 53.768 kb on + strand, within Ac3H11_696 at 53.769 kb on - strand, within Ac3H11_696 at 53.932 kb on + strand, within Ac3H11_696 at 53.933 kb on - strand, within Ac3H11_696 at 54.061 kb on + strand at 54.062 kb on - strand at 54.094 kb on + strand at 54.095 kb on - strand at 54.095 kb on - strand at 54.095 kb on - strand at 54.243 kb on + strand, within Ac3H11_697 at 54.244 kb on - strand, within Ac3H11_697 at 54.337 kb on + strand, within Ac3H11_697 at 54.337 kb on + strand, within Ac3H11_697 at 54.337 kb on + strand, within Ac3H11_697 at 54.337 kb on + strand, within Ac3H11_697 at 54.337 kb on + strand, within Ac3H11_697 at 54.338 kb on - strand, within Ac3H11_697 at 54.338 kb on - strand, within Ac3H11_697 at 54.338 kb on - strand, within Ac3H11_697 at 54.338 kb on - strand, within Ac3H11_697 at 54.472 kb on + strand, within Ac3H11_697 at 54.991 kb on + strand at 54.991 kb on + strand at 54.991 kb on + strand at 54.991 kb on + strand at 54.991 kb on + strand at 54.991 kb on + strand at 54.991 kb on + strand at 54.991 kb on + strand at 54.991 kb on + strand at 54.992 kb on - strand at 54.992 kb on - strand at 54.992 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.02 mg/ml remove 52,307 + Ac3H11_695 0.20 +1.4 52,307 + Ac3H11_695 0.20 +1.7 52,307 + Ac3H11_695 0.20 +0.5 52,307 + Ac3H11_695 0.20 +0.1 52,307 + Ac3H11_695 0.20 +0.4 52,308 - Ac3H11_695 0.20 +1.2 52,308 - Ac3H11_695 0.20 +1.7 52,308 - Ac3H11_695 0.20 -1.0 52,308 - Ac3H11_695 0.20 -0.4 52,377 + Ac3H11_695 0.26 +1.8 52,377 + Ac3H11_695 0.26 -0.0 52,377 + Ac3H11_695 0.26 +0.6 52,377 + Ac3H11_695 0.26 -3.7 52,378 - Ac3H11_695 0.26 +0.4 52,378 - Ac3H11_695 0.26 -0.5 52,440 + Ac3H11_695 0.32 +2.5 52,441 - Ac3H11_695 0.32 -0.5 52,441 - Ac3H11_695 0.32 -1.1 52,465 - Ac3H11_695 0.34 -0.3 53,164 + -1.2 53,165 - -0.4 53,288 + Ac3H11_696 0.15 -0.2 53,384 + Ac3H11_696 0.26 -0.2 53,385 - Ac3H11_696 0.26 +1.1 53,556 - Ac3H11_696 0.46 +1.2 53,768 + Ac3H11_696 0.70 +0.5 53,769 - Ac3H11_696 0.70 -0.3 53,932 + Ac3H11_696 0.89 +0.8 53,933 - Ac3H11_696 0.89 +0.8 54,061 + -2.2 54,062 - -0.6 54,094 + -0.4 54,095 - +1.4 54,095 - +0.2 54,095 - -2.0 54,243 + Ac3H11_697 0.23 -0.3 54,244 - Ac3H11_697 0.23 -0.1 54,337 + Ac3H11_697 0.33 -0.1 54,337 + Ac3H11_697 0.33 -0.5 54,337 + Ac3H11_697 0.33 -1.0 54,337 + Ac3H11_697 0.33 +0.9 54,337 + Ac3H11_697 0.33 -0.2 54,338 - Ac3H11_697 0.33 -2.0 54,338 - Ac3H11_697 0.33 -0.2 54,338 - Ac3H11_697 0.33 +0.6 54,338 - Ac3H11_697 0.33 +0.6 54,472 + Ac3H11_697 0.47 -1.3 54,991 + +0.4 54,991 + -1.8 54,991 + +0.4 54,991 + +0.5 54,991 + +1.5 54,991 + -1.3 54,991 + +0.0 54,991 + +0.6 54,991 + -0.3 54,992 - -0.3 54,992 - +0.4 54,992 - +0.9
Or see this region's nucleotide sequence