Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3105

Experiment: Phosphomycin 0.02 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_3104 and Ac3H11_3105 are separated by 288 nucleotidesAc3H11_3105 and Ac3H11_3106 are separated by 205 nucleotides Ac3H11_3104 - putative flagellin, at 2,894 to 4,597 _3104 Ac3H11_3105 - MFS general substrate transporter, at 4,886 to 6,157 _3105 Ac3H11_3106 - FIG00348192: hypothetical protein, at 6,363 to 7,928 _3106 Position (kb) 4 5 6 7Strain fitness (log2 ratio) -2 -1 0 1 2at 3.993 kb on + strand, within Ac3H11_3104at 3.993 kb on + strand, within Ac3H11_3104at 4.074 kb on + strand, within Ac3H11_3104at 4.571 kb on + strandat 4.571 kb on + strandat 4.571 kb on + strandat 4.572 kb on - strandat 4.572 kb on - strandat 4.632 kb on + strandat 4.632 kb on + strandat 4.633 kb on - strandat 4.637 kb on - strandat 4.642 kb on + strandat 4.643 kb on - strandat 4.643 kb on - strandat 4.774 kb on - strandat 4.797 kb on + strandat 4.798 kb on - strandat 5.033 kb on + strand, within Ac3H11_3105at 5.033 kb on + strand, within Ac3H11_3105at 5.034 kb on - strand, within Ac3H11_3105at 5.066 kb on + strand, within Ac3H11_3105at 5.066 kb on + strand, within Ac3H11_3105at 5.067 kb on - strand, within Ac3H11_3105at 5.067 kb on - strand, within Ac3H11_3105at 5.067 kb on - strand, within Ac3H11_3105at 5.067 kb on - strand, within Ac3H11_3105at 5.107 kb on - strand, within Ac3H11_3105at 5.240 kb on + strand, within Ac3H11_3105at 5.240 kb on + strand, within Ac3H11_3105at 5.240 kb on + strand, within Ac3H11_3105at 5.240 kb on + strand, within Ac3H11_3105at 5.240 kb on + strand, within Ac3H11_3105at 5.240 kb on + strand, within Ac3H11_3105at 5.240 kb on + strand, within Ac3H11_3105at 5.240 kb on + strand, within Ac3H11_3105at 5.240 kb on + strand, within Ac3H11_3105at 5.241 kb on - strand, within Ac3H11_3105at 5.241 kb on - strand, within Ac3H11_3105at 5.258 kb on + strand, within Ac3H11_3105at 5.258 kb on + strand, within Ac3H11_3105at 5.258 kb on + strand, within Ac3H11_3105at 5.259 kb on - strand, within Ac3H11_3105at 5.408 kb on + strand, within Ac3H11_3105at 5.409 kb on - strand, within Ac3H11_3105at 5.409 kb on - strand, within Ac3H11_3105at 5.435 kb on + strand, within Ac3H11_3105at 5.435 kb on + strand, within Ac3H11_3105at 5.435 kb on + strand, within Ac3H11_3105at 5.435 kb on + strand, within Ac3H11_3105at 5.435 kb on + strand, within Ac3H11_3105at 5.435 kb on + strand, within Ac3H11_3105at 5.435 kb on + strand, within Ac3H11_3105at 5.436 kb on - strand, within Ac3H11_3105at 5.436 kb on - strand, within Ac3H11_3105at 5.436 kb on - strand, within Ac3H11_3105at 5.651 kb on + strand, within Ac3H11_3105at 5.651 kb on + strand, within Ac3H11_3105at 5.651 kb on + strand, within Ac3H11_3105at 5.651 kb on + strand, within Ac3H11_3105at 5.651 kb on + strand, within Ac3H11_3105at 5.651 kb on + strand, within Ac3H11_3105at 5.651 kb on + strand, within Ac3H11_3105at 5.652 kb on - strand, within Ac3H11_3105at 5.652 kb on - strand, within Ac3H11_3105at 5.652 kb on - strand, within Ac3H11_3105at 5.738 kb on + strand, within Ac3H11_3105at 5.739 kb on - strand, within Ac3H11_3105at 5.897 kb on + strand, within Ac3H11_3105at 5.897 kb on + strand, within Ac3H11_3105at 5.897 kb on + strand, within Ac3H11_3105at 5.897 kb on + strand, within Ac3H11_3105at 5.897 kb on + strand, within Ac3H11_3105at 5.898 kb on - strand, within Ac3H11_3105at 5.898 kb on - strand, within Ac3H11_3105at 5.898 kb on - strand, within Ac3H11_3105at 6.079 kb on - strandat 6.203 kb on + strandat 6.203 kb on + strandat 6.237 kb on - strandat 6.237 kb on - strandat 6.792 kb on + strand, within Ac3H11_3106at 6.892 kb on - strand, within Ac3H11_3106at 6.950 kb on + strand, within Ac3H11_3106at 6.979 kb on - strand, within Ac3H11_3106at 6.979 kb on - strand, within Ac3H11_3106at 6.979 kb on - strand, within Ac3H11_3106

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.02 mg/ml
remove
3,993 + Ac3H11_3104 0.64 -0.2
3,993 + Ac3H11_3104 0.64 -0.5
4,074 + Ac3H11_3104 0.69 -0.3
4,571 + +1.0
4,571 + -0.7
4,571 + +0.0
4,572 - +1.1
4,572 - -1.4
4,632 + +1.6
4,632 + +0.1
4,633 - -0.1
4,637 - +0.4
4,642 + +1.6
4,643 - +1.3
4,643 - +1.1
4,774 - -0.3
4,797 + +0.1
4,798 - +0.0
5,033 + Ac3H11_3105 0.12 +1.1
5,033 + Ac3H11_3105 0.12 +0.5
5,034 - Ac3H11_3105 0.12 -0.1
5,066 + Ac3H11_3105 0.14 +2.4
5,066 + Ac3H11_3105 0.14 +0.4
5,067 - Ac3H11_3105 0.14 +0.7
5,067 - Ac3H11_3105 0.14 -0.7
5,067 - Ac3H11_3105 0.14 -1.0
5,067 - Ac3H11_3105 0.14 -1.1
5,107 - Ac3H11_3105 0.17 +1.0
5,240 + Ac3H11_3105 0.28 +0.6
5,240 + Ac3H11_3105 0.28 +0.2
5,240 + Ac3H11_3105 0.28 -1.1
5,240 + Ac3H11_3105 0.28 -0.5
5,240 + Ac3H11_3105 0.28 +0.7
5,240 + Ac3H11_3105 0.28 -1.1
5,240 + Ac3H11_3105 0.28 +0.3
5,240 + Ac3H11_3105 0.28 -0.6
5,240 + Ac3H11_3105 0.28 +1.5
5,241 - Ac3H11_3105 0.28 -0.0
5,241 - Ac3H11_3105 0.28 -1.0
5,258 + Ac3H11_3105 0.29 +0.1
5,258 + Ac3H11_3105 0.29 +0.4
5,258 + Ac3H11_3105 0.29 +1.0
5,259 - Ac3H11_3105 0.29 +0.3
5,408 + Ac3H11_3105 0.41 +1.5
5,409 - Ac3H11_3105 0.41 -1.2
5,409 - Ac3H11_3105 0.41 -0.0
5,435 + Ac3H11_3105 0.43 +1.3
5,435 + Ac3H11_3105 0.43 +1.7
5,435 + Ac3H11_3105 0.43 -0.5
5,435 + Ac3H11_3105 0.43 +0.7
5,435 + Ac3H11_3105 0.43 +0.7
5,435 + Ac3H11_3105 0.43 +0.0
5,435 + Ac3H11_3105 0.43 -0.4
5,436 - Ac3H11_3105 0.43 -0.3
5,436 - Ac3H11_3105 0.43 -0.2
5,436 - Ac3H11_3105 0.43 +1.1
5,651 + Ac3H11_3105 0.60 +0.6
5,651 + Ac3H11_3105 0.60 +0.4
5,651 + Ac3H11_3105 0.60 +0.7
5,651 + Ac3H11_3105 0.60 -1.2
5,651 + Ac3H11_3105 0.60 -1.2
5,651 + Ac3H11_3105 0.60 -0.3
5,651 + Ac3H11_3105 0.60 +0.1
5,652 - Ac3H11_3105 0.60 +0.6
5,652 - Ac3H11_3105 0.60 +1.2
5,652 - Ac3H11_3105 0.60 +0.5
5,738 + Ac3H11_3105 0.67 -0.2
5,739 - Ac3H11_3105 0.67 -0.2
5,897 + Ac3H11_3105 0.79 +0.0
5,897 + Ac3H11_3105 0.79 -2.4
5,897 + Ac3H11_3105 0.79 +0.4
5,897 + Ac3H11_3105 0.79 +0.0
5,897 + Ac3H11_3105 0.79 +0.8
5,898 - Ac3H11_3105 0.80 -0.6
5,898 - Ac3H11_3105 0.80 -0.1
5,898 - Ac3H11_3105 0.80 +0.5
6,079 - -0.7
6,203 + +1.4
6,203 + -0.2
6,237 - +0.4
6,237 - -1.4
6,792 + Ac3H11_3106 0.27 -1.8
6,892 - Ac3H11_3106 0.34 +0.5
6,950 + Ac3H11_3106 0.37 +0.9
6,979 - Ac3H11_3106 0.39 -0.2
6,979 - Ac3H11_3106 0.39 -0.3
6,979 - Ac3H11_3106 0.39 -0.8

Or see this region's nucleotide sequence