Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_300

Experiment: Phosphomycin 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_299 and Ac3H11_300 are separated by 91 nucleotidesAc3H11_300 and Ac3H11_301 are separated by 36 nucleotides Ac3H11_299 - EAL domain protein, at 120,276 to 121,556 _299 Ac3H11_300 - Tricarboxylate transport protein TctC, at 121,648 to 122,637 _300 Ac3H11_301 - putative exported protein, at 122,674 to 123,636 _301 Position (kb) 121 122 123Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 120.714 kb on + strand, within Ac3H11_299at 120.715 kb on - strand, within Ac3H11_299at 120.715 kb on - strand, within Ac3H11_299at 120.715 kb on - strand, within Ac3H11_299at 120.715 kb on - strand, within Ac3H11_299at 120.859 kb on - strand, within Ac3H11_299at 120.859 kb on - strand, within Ac3H11_299at 120.859 kb on - strand, within Ac3H11_299at 120.901 kb on - strand, within Ac3H11_299at 121.576 kb on + strandat 121.576 kb on + strandat 121.576 kb on + strandat 121.577 kb on - strandat 121.577 kb on - strandat 121.646 kb on + strandat 121.647 kb on - strandat 121.647 kb on - strandat 121.859 kb on + strand, within Ac3H11_300at 121.859 kb on + strand, within Ac3H11_300at 121.859 kb on + strand, within Ac3H11_300at 121.859 kb on + strand, within Ac3H11_300at 121.859 kb on + strand, within Ac3H11_300at 121.859 kb on + strand, within Ac3H11_300at 121.859 kb on + strand, within Ac3H11_300at 121.859 kb on + strand, within Ac3H11_300at 121.859 kb on + strand, within Ac3H11_300at 121.859 kb on + strand, within Ac3H11_300at 121.859 kb on + strand, within Ac3H11_300at 121.859 kb on + strand, within Ac3H11_300at 121.859 kb on + strand, within Ac3H11_300at 121.859 kb on + strand, within Ac3H11_300at 121.859 kb on + strand, within Ac3H11_300at 121.859 kb on + strand, within Ac3H11_300at 121.860 kb on - strand, within Ac3H11_300at 121.860 kb on - strand, within Ac3H11_300at 121.860 kb on - strand, within Ac3H11_300at 121.860 kb on - strand, within Ac3H11_300at 121.860 kb on - strand, within Ac3H11_300at 121.860 kb on - strand, within Ac3H11_300at 121.860 kb on - strand, within Ac3H11_300at 121.860 kb on - strand, within Ac3H11_300at 121.860 kb on - strand, within Ac3H11_300at 121.860 kb on - strand, within Ac3H11_300at 121.860 kb on - strand, within Ac3H11_300at 122.030 kb on + strand, within Ac3H11_300at 122.030 kb on + strand, within Ac3H11_300at 122.031 kb on - strand, within Ac3H11_300at 122.075 kb on + strand, within Ac3H11_300at 122.075 kb on + strand, within Ac3H11_300at 122.075 kb on + strand, within Ac3H11_300at 122.076 kb on - strand, within Ac3H11_300at 122.076 kb on - strand, within Ac3H11_300at 122.076 kb on - strand, within Ac3H11_300at 122.076 kb on - strand, within Ac3H11_300at 122.076 kb on - strand, within Ac3H11_300at 122.076 kb on - strand, within Ac3H11_300at 122.258 kb on + strand, within Ac3H11_300at 122.258 kb on + strand, within Ac3H11_300at 122.258 kb on + strand, within Ac3H11_300at 122.258 kb on + strand, within Ac3H11_300at 122.258 kb on + strand, within Ac3H11_300at 122.259 kb on - strand, within Ac3H11_300at 122.259 kb on - strand, within Ac3H11_300at 122.259 kb on - strand, within Ac3H11_300at 122.259 kb on - strand, within Ac3H11_300at 122.259 kb on - strand, within Ac3H11_300at 122.259 kb on - strand, within Ac3H11_300at 122.259 kb on - strand, within Ac3H11_300at 122.259 kb on - strand, within Ac3H11_300at 122.363 kb on + strand, within Ac3H11_300at 122.363 kb on + strand, within Ac3H11_300at 122.363 kb on + strand, within Ac3H11_300at 122.363 kb on + strand, within Ac3H11_300at 122.364 kb on - strand, within Ac3H11_300at 122.364 kb on - strand, within Ac3H11_300at 122.526 kb on + strand, within Ac3H11_300at 122.626 kb on + strandat 122.626 kb on + strandat 122.627 kb on - strandat 122.627 kb on - strandat 122.640 kb on + strandat 122.641 kb on - strandat 122.770 kb on + strandat 122.770 kb on + strandat 122.770 kb on + strandat 122.770 kb on + strandat 122.771 kb on - strand, within Ac3H11_301at 122.771 kb on - strand, within Ac3H11_301at 122.771 kb on - strand, within Ac3H11_301at 122.862 kb on + strand, within Ac3H11_301at 122.862 kb on + strand, within Ac3H11_301at 122.863 kb on - strand, within Ac3H11_301at 122.863 kb on - strand, within Ac3H11_301at 122.881 kb on + strand, within Ac3H11_301at 122.881 kb on + strand, within Ac3H11_301at 122.881 kb on + strand, within Ac3H11_301at 122.881 kb on + strand, within Ac3H11_301at 122.882 kb on - strand, within Ac3H11_301at 122.882 kb on - strand, within Ac3H11_301at 122.882 kb on - strand, within Ac3H11_301at 123.095 kb on + strand, within Ac3H11_301at 123.095 kb on + strand, within Ac3H11_301at 123.095 kb on + strand, within Ac3H11_301at 123.095 kb on + strand, within Ac3H11_301at 123.096 kb on - strand, within Ac3H11_301at 123.096 kb on - strand, within Ac3H11_301at 123.096 kb on - strand, within Ac3H11_301at 123.096 kb on - strand, within Ac3H11_301at 123.096 kb on - strand, within Ac3H11_301at 123.096 kb on - strand, within Ac3H11_301at 123.096 kb on - strand, within Ac3H11_301at 123.269 kb on + strand, within Ac3H11_301at 123.269 kb on + strand, within Ac3H11_301at 123.269 kb on + strand, within Ac3H11_301at 123.269 kb on + strand, within Ac3H11_301at 123.269 kb on + strand, within Ac3H11_301at 123.269 kb on + strand, within Ac3H11_301at 123.269 kb on + strand, within Ac3H11_301at 123.269 kb on + strand, within Ac3H11_301at 123.269 kb on + strand, within Ac3H11_301at 123.269 kb on + strand, within Ac3H11_301at 123.270 kb on - strand, within Ac3H11_301at 123.270 kb on - strand, within Ac3H11_301at 123.296 kb on + strand, within Ac3H11_301at 123.296 kb on + strand, within Ac3H11_301at 123.296 kb on + strand, within Ac3H11_301at 123.297 kb on - strand, within Ac3H11_301at 123.297 kb on - strand, within Ac3H11_301at 123.321 kb on - strand, within Ac3H11_301at 123.321 kb on - strand, within Ac3H11_301at 123.321 kb on - strand, within Ac3H11_301at 123.341 kb on + strand, within Ac3H11_301at 123.341 kb on + strand, within Ac3H11_301at 123.342 kb on - strand, within Ac3H11_301at 123.386 kb on + strand, within Ac3H11_301at 123.387 kb on - strand, within Ac3H11_301at 123.387 kb on - strand, within Ac3H11_301at 123.387 kb on - strand, within Ac3H11_301at 123.387 kb on - strand, within Ac3H11_301at 123.449 kb on + strand, within Ac3H11_301at 123.449 kb on + strand, within Ac3H11_301at 123.449 kb on + strand, within Ac3H11_301at 123.449 kb on + strand, within Ac3H11_301at 123.449 kb on + strand, within Ac3H11_301at 123.449 kb on + strand, within Ac3H11_301at 123.449 kb on + strand, within Ac3H11_301at 123.449 kb on + strand, within Ac3H11_301at 123.449 kb on + strand, within Ac3H11_301at 123.450 kb on - strand, within Ac3H11_301at 123.450 kb on - strand, within Ac3H11_301at 123.450 kb on - strand, within Ac3H11_301at 123.471 kb on + strand, within Ac3H11_301at 123.471 kb on + strand, within Ac3H11_301at 123.471 kb on + strand, within Ac3H11_301at 123.472 kb on - strand, within Ac3H11_301at 123.472 kb on - strand, within Ac3H11_301at 123.472 kb on - strand, within Ac3H11_301

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.02 mg/ml
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120,714 + Ac3H11_299 0.34 +0.8
120,715 - Ac3H11_299 0.34 -0.9
120,715 - Ac3H11_299 0.34 -0.5
120,715 - Ac3H11_299 0.34 +1.8
120,715 - Ac3H11_299 0.34 +0.3
120,859 - Ac3H11_299 0.46 +0.3
120,859 - Ac3H11_299 0.46 +0.0
120,859 - Ac3H11_299 0.46 +0.3
120,901 - Ac3H11_299 0.49 +1.0
121,576 + +0.9
121,576 + -1.6
121,576 + +0.6
121,577 - +0.2
121,577 - -2.8
121,646 + -0.6
121,647 - -1.2
121,647 - -0.7
121,859 + Ac3H11_300 0.21 +0.8
121,859 + Ac3H11_300 0.21 -0.6
121,859 + Ac3H11_300 0.21 +0.1
121,859 + Ac3H11_300 0.21 +0.0
121,859 + Ac3H11_300 0.21 -0.3
121,859 + Ac3H11_300 0.21 +1.2
121,859 + Ac3H11_300 0.21 +1.1
121,859 + Ac3H11_300 0.21 +0.9
121,859 + Ac3H11_300 0.21 -0.5
121,859 + Ac3H11_300 0.21 +0.2
121,859 + Ac3H11_300 0.21 -2.2
121,859 + Ac3H11_300 0.21 +0.4
121,859 + Ac3H11_300 0.21 +1.1
121,859 + Ac3H11_300 0.21 -1.2
121,859 + Ac3H11_300 0.21 +0.4
121,859 + Ac3H11_300 0.21 +0.5
121,860 - Ac3H11_300 0.21 +0.4
121,860 - Ac3H11_300 0.21 -0.8
121,860 - Ac3H11_300 0.21 -1.4
121,860 - Ac3H11_300 0.21 -0.3
121,860 - Ac3H11_300 0.21 +0.3
121,860 - Ac3H11_300 0.21 -0.4
121,860 - Ac3H11_300 0.21 -0.8
121,860 - Ac3H11_300 0.21 +0.8
121,860 - Ac3H11_300 0.21 +0.1
121,860 - Ac3H11_300 0.21 +0.2
121,860 - Ac3H11_300 0.21 +0.0
122,030 + Ac3H11_300 0.39 +1.7
122,030 + Ac3H11_300 0.39 -1.0
122,031 - Ac3H11_300 0.39 +0.1
122,075 + Ac3H11_300 0.43 +1.4
122,075 + Ac3H11_300 0.43 +1.6
122,075 + Ac3H11_300 0.43 +0.4
122,076 - Ac3H11_300 0.43 -0.2
122,076 - Ac3H11_300 0.43 -1.1
122,076 - Ac3H11_300 0.43 +0.9
122,076 - Ac3H11_300 0.43 +0.5
122,076 - Ac3H11_300 0.43 +0.3
122,076 - Ac3H11_300 0.43 -1.6
122,258 + Ac3H11_300 0.62 -0.2
122,258 + Ac3H11_300 0.62 +1.3
122,258 + Ac3H11_300 0.62 +2.1
122,258 + Ac3H11_300 0.62 +0.7
122,258 + Ac3H11_300 0.62 -0.2
122,259 - Ac3H11_300 0.62 +0.3
122,259 - Ac3H11_300 0.62 +1.1
122,259 - Ac3H11_300 0.62 +0.2
122,259 - Ac3H11_300 0.62 -0.8
122,259 - Ac3H11_300 0.62 -0.2
122,259 - Ac3H11_300 0.62 +0.6
122,259 - Ac3H11_300 0.62 +4.2
122,259 - Ac3H11_300 0.62 -0.3
122,363 + Ac3H11_300 0.72 +0.2
122,363 + Ac3H11_300 0.72 +0.1
122,363 + Ac3H11_300 0.72 -1.0
122,363 + Ac3H11_300 0.72 -0.6
122,364 - Ac3H11_300 0.72 -0.1
122,364 - Ac3H11_300 0.72 -2.0
122,526 + Ac3H11_300 0.89 -0.5
122,626 + +0.4
122,626 + +0.6
122,627 - -0.2
122,627 - +0.1
122,640 + +1.1
122,641 - +0.8
122,770 + -0.9
122,770 + -1.0
122,770 + +1.0
122,770 + +1.2
122,771 - Ac3H11_301 0.10 -1.0
122,771 - Ac3H11_301 0.10 +0.5
122,771 - Ac3H11_301 0.10 +0.5
122,862 + Ac3H11_301 0.20 +1.4
122,862 + Ac3H11_301 0.20 -1.5
122,863 - Ac3H11_301 0.20 -0.7
122,863 - Ac3H11_301 0.20 -0.8
122,881 + Ac3H11_301 0.21 +0.5
122,881 + Ac3H11_301 0.21 -2.3
122,881 + Ac3H11_301 0.21 +0.5
122,881 + Ac3H11_301 0.21 -0.4
122,882 - Ac3H11_301 0.22 -0.7
122,882 - Ac3H11_301 0.22 -1.0
122,882 - Ac3H11_301 0.22 -1.0
123,095 + Ac3H11_301 0.44 +0.9
123,095 + Ac3H11_301 0.44 -1.0
123,095 + Ac3H11_301 0.44 +0.1
123,095 + Ac3H11_301 0.44 +0.8
123,096 - Ac3H11_301 0.44 -0.4
123,096 - Ac3H11_301 0.44 +0.5
123,096 - Ac3H11_301 0.44 -1.0
123,096 - Ac3H11_301 0.44 -2.6
123,096 - Ac3H11_301 0.44 -0.4
123,096 - Ac3H11_301 0.44 -0.9
123,096 - Ac3H11_301 0.44 +0.2
123,269 + Ac3H11_301 0.62 +0.7
123,269 + Ac3H11_301 0.62 +0.3
123,269 + Ac3H11_301 0.62 +0.8
123,269 + Ac3H11_301 0.62 -0.3
123,269 + Ac3H11_301 0.62 -0.8
123,269 + Ac3H11_301 0.62 +0.6
123,269 + Ac3H11_301 0.62 -0.3
123,269 + Ac3H11_301 0.62 +1.1
123,269 + Ac3H11_301 0.62 -0.6
123,269 + Ac3H11_301 0.62 +0.0
123,270 - Ac3H11_301 0.62 +0.3
123,270 - Ac3H11_301 0.62 -0.5
123,296 + Ac3H11_301 0.65 -0.6
123,296 + Ac3H11_301 0.65 -0.9
123,296 + Ac3H11_301 0.65 +0.6
123,297 - Ac3H11_301 0.65 +0.8
123,297 - Ac3H11_301 0.65 -0.2
123,321 - Ac3H11_301 0.67 +0.5
123,321 - Ac3H11_301 0.67 -0.2
123,321 - Ac3H11_301 0.67 -1.1
123,341 + Ac3H11_301 0.69 -0.4
123,341 + Ac3H11_301 0.69 +2.9
123,342 - Ac3H11_301 0.69 -2.4
123,386 + Ac3H11_301 0.74 +0.2
123,387 - Ac3H11_301 0.74 -0.4
123,387 - Ac3H11_301 0.74 +0.8
123,387 - Ac3H11_301 0.74 +0.7
123,387 - Ac3H11_301 0.74 -0.4
123,449 + Ac3H11_301 0.80 +1.0
123,449 + Ac3H11_301 0.80 +0.6
123,449 + Ac3H11_301 0.80 -0.4
123,449 + Ac3H11_301 0.80 +0.7
123,449 + Ac3H11_301 0.80 +0.4
123,449 + Ac3H11_301 0.80 +0.6
123,449 + Ac3H11_301 0.80 +0.5
123,449 + Ac3H11_301 0.80 -1.1
123,449 + Ac3H11_301 0.80 -0.2
123,450 - Ac3H11_301 0.81 -0.7
123,450 - Ac3H11_301 0.81 -1.0
123,450 - Ac3H11_301 0.81 +0.1
123,471 + Ac3H11_301 0.83 +0.6
123,471 + Ac3H11_301 0.83 +1.1
123,471 + Ac3H11_301 0.83 -1.7
123,472 - Ac3H11_301 0.83 +0.8
123,472 - Ac3H11_301 0.83 +0.8
123,472 - Ac3H11_301 0.83 +1.3

Or see this region's nucleotide sequence