Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2562

Experiment: Phosphomycin 0.02 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_2560 and Ac3H11_2561 overlap by 4 nucleotidesAc3H11_2561 and Ac3H11_2562 are separated by 112 nucleotidesAc3H11_2562 and Ac3H11_2563 are separated by 370 nucleotides Ac3H11_2560 - ABC transporter for L-Histidine, ATPase component (from data), at 838,325 to 839,104 _2560 Ac3H11_2561 - ABC transporter for L-Histidine, permease component 2 (from data), at 839,101 to 839,859 _2561 Ac3H11_2562 - ABC transporter for L-Histidine, periplasmic substrate-binding component 2 (from data), at 839,972 to 840,937 _2562 Ac3H11_2563 - Adenylate cyclase (EC 4.6.1.1), at 841,308 to 842,699 _2563 Position (kb) 839 840 841Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 839.288 kb on + strand, within Ac3H11_2561at 839.288 kb on + strand, within Ac3H11_2561at 839.288 kb on + strand, within Ac3H11_2561at 839.288 kb on + strand, within Ac3H11_2561at 839.288 kb on + strand, within Ac3H11_2561at 839.288 kb on + strand, within Ac3H11_2561at 839.288 kb on + strand, within Ac3H11_2561at 839.288 kb on + strand, within Ac3H11_2561at 839.289 kb on - strand, within Ac3H11_2561at 839.289 kb on - strand, within Ac3H11_2561at 839.289 kb on - strand, within Ac3H11_2561at 839.289 kb on - strand, within Ac3H11_2561at 839.289 kb on - strand, within Ac3H11_2561at 839.289 kb on - strand, within Ac3H11_2561at 839.289 kb on - strand, within Ac3H11_2561at 839.603 kb on + strand, within Ac3H11_2561at 839.603 kb on + strand, within Ac3H11_2561at 839.603 kb on + strand, within Ac3H11_2561at 839.603 kb on + strand, within Ac3H11_2561at 839.603 kb on + strand, within Ac3H11_2561at 839.603 kb on + strand, within Ac3H11_2561at 839.603 kb on + strand, within Ac3H11_2561at 839.603 kb on + strand, within Ac3H11_2561at 839.603 kb on + strand, within Ac3H11_2561at 839.604 kb on - strand, within Ac3H11_2561at 839.604 kb on - strand, within Ac3H11_2561at 839.604 kb on - strand, within Ac3H11_2561at 839.604 kb on - strand, within Ac3H11_2561at 839.604 kb on - strand, within Ac3H11_2561at 839.697 kb on + strand, within Ac3H11_2561at 839.697 kb on + strand, within Ac3H11_2561at 839.705 kb on + strand, within Ac3H11_2561at 839.706 kb on - strand, within Ac3H11_2561at 839.706 kb on - strand, within Ac3H11_2561at 839.706 kb on - strand, within Ac3H11_2561at 839.913 kb on + strandat 839.950 kb on + strandat 839.950 kb on + strandat 839.950 kb on + strandat 839.950 kb on + strandat 839.969 kb on + strandat 839.969 kb on + strandat 839.969 kb on + strandat 839.969 kb on + strandat 839.970 kb on - strandat 839.970 kb on - strandat 839.970 kb on - strandat 839.970 kb on - strandat 839.970 kb on - strandat 839.970 kb on - strandat 839.973 kb on + strandat 839.973 kb on + strandat 839.973 kb on + strandat 839.973 kb on + strandat 839.973 kb on + strandat 839.973 kb on + strandat 839.974 kb on - strandat 839.974 kb on - strandat 839.974 kb on - strandat 839.974 kb on - strandat 839.974 kb on - strandat 840.234 kb on + strand, within Ac3H11_2562at 840.234 kb on + strand, within Ac3H11_2562at 840.235 kb on - strand, within Ac3H11_2562at 840.235 kb on - strand, within Ac3H11_2562at 840.235 kb on - strand, within Ac3H11_2562at 840.318 kb on + strand, within Ac3H11_2562at 840.319 kb on - strand, within Ac3H11_2562at 840.378 kb on + strand, within Ac3H11_2562at 840.379 kb on - strand, within Ac3H11_2562at 840.379 kb on - strand, within Ac3H11_2562at 840.387 kb on + strand, within Ac3H11_2562at 840.387 kb on + strand, within Ac3H11_2562at 840.387 kb on + strand, within Ac3H11_2562at 840.387 kb on + strand, within Ac3H11_2562at 840.388 kb on - strand, within Ac3H11_2562at 840.388 kb on - strand, within Ac3H11_2562at 840.388 kb on - strand, within Ac3H11_2562at 840.388 kb on - strand, within Ac3H11_2562at 840.388 kb on - strand, within Ac3H11_2562at 840.388 kb on - strand, within Ac3H11_2562at 840.388 kb on - strand, within Ac3H11_2562at 840.513 kb on + strand, within Ac3H11_2562at 840.513 kb on + strand, within Ac3H11_2562at 840.513 kb on + strand, within Ac3H11_2562at 840.513 kb on + strand, within Ac3H11_2562at 840.514 kb on - strand, within Ac3H11_2562at 840.610 kb on - strand, within Ac3H11_2562at 840.961 kb on + strandat 841.017 kb on + strandat 841.023 kb on + strandat 841.023 kb on + strandat 841.023 kb on + strandat 841.023 kb on + strandat 841.023 kb on + strandat 841.024 kb on - strandat 841.024 kb on - strandat 841.024 kb on - strandat 841.024 kb on - strandat 841.024 kb on - strandat 841.024 kb on - strandat 841.024 kb on - strandat 841.024 kb on - strandat 841.024 kb on - strandat 841.024 kb on - strandat 841.025 kb on + strandat 841.025 kb on + strandat 841.025 kb on + strandat 841.025 kb on + strandat 841.025 kb on + strandat 841.025 kb on + strandat 841.025 kb on + strandat 841.025 kb on + strandat 841.026 kb on - strandat 841.026 kb on - strandat 841.026 kb on - strandat 841.027 kb on + strandat 841.027 kb on + strandat 841.027 kb on + strandat 841.027 kb on + strandat 841.027 kb on + strandat 841.028 kb on - strandat 841.034 kb on + strandat 841.034 kb on + strandat 841.074 kb on + strandat 841.074 kb on + strandat 841.075 kb on - strandat 841.075 kb on - strandat 841.127 kb on + strandat 841.127 kb on + strandat 841.127 kb on + strandat 841.127 kb on + strandat 841.128 kb on - strandat 841.210 kb on - strandat 841.287 kb on - strandat 841.408 kb on + strandat 841.409 kb on - strandat 841.409 kb on - strandat 841.462 kb on + strand, within Ac3H11_2563

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.02 mg/ml
remove
839,288 + Ac3H11_2561 0.25 -1.2
839,288 + Ac3H11_2561 0.25 -0.7
839,288 + Ac3H11_2561 0.25 -1.2
839,288 + Ac3H11_2561 0.25 +0.1
839,288 + Ac3H11_2561 0.25 -0.5
839,288 + Ac3H11_2561 0.25 +1.0
839,288 + Ac3H11_2561 0.25 +0.8
839,288 + Ac3H11_2561 0.25 -1.0
839,289 - Ac3H11_2561 0.25 -1.8
839,289 - Ac3H11_2561 0.25 -0.1
839,289 - Ac3H11_2561 0.25 -0.9
839,289 - Ac3H11_2561 0.25 +0.4
839,289 - Ac3H11_2561 0.25 +0.2
839,289 - Ac3H11_2561 0.25 -0.4
839,289 - Ac3H11_2561 0.25 -1.0
839,603 + Ac3H11_2561 0.66 -0.6
839,603 + Ac3H11_2561 0.66 -2.4
839,603 + Ac3H11_2561 0.66 +0.4
839,603 + Ac3H11_2561 0.66 -0.1
839,603 + Ac3H11_2561 0.66 -0.4
839,603 + Ac3H11_2561 0.66 -3.0
839,603 + Ac3H11_2561 0.66 +0.1
839,603 + Ac3H11_2561 0.66 +1.6
839,603 + Ac3H11_2561 0.66 +0.7
839,604 - Ac3H11_2561 0.66 +0.8
839,604 - Ac3H11_2561 0.66 +0.4
839,604 - Ac3H11_2561 0.66 -0.1
839,604 - Ac3H11_2561 0.66 -0.1
839,604 - Ac3H11_2561 0.66 +0.4
839,697 + Ac3H11_2561 0.79 -0.3
839,697 + Ac3H11_2561 0.79 -1.5
839,705 + Ac3H11_2561 0.80 -0.1
839,706 - Ac3H11_2561 0.80 -0.7
839,706 - Ac3H11_2561 0.80 +1.4
839,706 - Ac3H11_2561 0.80 +0.9
839,913 + +0.5
839,950 + +0.5
839,950 + +0.8
839,950 + +0.8
839,950 + -0.5
839,969 + -1.2
839,969 + -1.7
839,969 + -1.1
839,969 + +1.0
839,970 - +0.1
839,970 - -2.1
839,970 - -0.0
839,970 - -0.5
839,970 - -1.5
839,970 - -0.9
839,973 + +1.2
839,973 + +1.0
839,973 + +0.8
839,973 + +0.4
839,973 + -1.1
839,973 + +0.2
839,974 - -0.0
839,974 - +1.3
839,974 - +1.1
839,974 - -1.1
839,974 - +0.2
840,234 + Ac3H11_2562 0.27 -0.3
840,234 + Ac3H11_2562 0.27 +0.3
840,235 - Ac3H11_2562 0.27 -0.3
840,235 - Ac3H11_2562 0.27 -1.7
840,235 - Ac3H11_2562 0.27 +1.2
840,318 + Ac3H11_2562 0.36 -0.0
840,319 - Ac3H11_2562 0.36 -0.2
840,378 + Ac3H11_2562 0.42 -0.9
840,379 - Ac3H11_2562 0.42 +0.3
840,379 - Ac3H11_2562 0.42 -2.7
840,387 + Ac3H11_2562 0.43 -0.2
840,387 + Ac3H11_2562 0.43 -0.1
840,387 + Ac3H11_2562 0.43 +1.6
840,387 + Ac3H11_2562 0.43 +0.3
840,388 - Ac3H11_2562 0.43 -1.0
840,388 - Ac3H11_2562 0.43 -0.2
840,388 - Ac3H11_2562 0.43 -1.0
840,388 - Ac3H11_2562 0.43 +0.4
840,388 - Ac3H11_2562 0.43 +0.6
840,388 - Ac3H11_2562 0.43 +0.7
840,388 - Ac3H11_2562 0.43 +1.9
840,513 + Ac3H11_2562 0.56 +0.7
840,513 + Ac3H11_2562 0.56 -0.4
840,513 + Ac3H11_2562 0.56 +2.3
840,513 + Ac3H11_2562 0.56 +0.8
840,514 - Ac3H11_2562 0.56 -1.0
840,610 - Ac3H11_2562 0.66 -1.2
840,961 + -0.0
841,017 + -2.0
841,023 + -1.7
841,023 + -0.2
841,023 + +0.6
841,023 + +0.9
841,023 + +1.3
841,024 - -0.3
841,024 - -0.2
841,024 - +0.4
841,024 - -3.6
841,024 - -1.5
841,024 - -1.8
841,024 - -2.4
841,024 - -1.3
841,024 - -0.4
841,024 - -3.2
841,025 + -1.0
841,025 + +0.3
841,025 + -1.2
841,025 + +0.1
841,025 + +0.6
841,025 + -0.7
841,025 + -1.7
841,025 + +0.7
841,026 - -3.2
841,026 - -4.0
841,026 - -1.8
841,027 + +1.0
841,027 + +0.9
841,027 + +1.7
841,027 + +1.4
841,027 + +0.6
841,028 - +0.0
841,034 + -0.9
841,034 + -0.8
841,074 + +0.3
841,074 + -0.6
841,075 - +0.1
841,075 - +0.2
841,127 + -2.0
841,127 + -0.4
841,127 + -1.6
841,127 + +0.5
841,128 - +0.2
841,210 - +1.4
841,287 - +0.2
841,408 + -0.2
841,409 - +0.4
841,409 - -0.2
841,462 + Ac3H11_2563 0.11 +1.3

Or see this region's nucleotide sequence