Experiment: Phosphomycin 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1766 and Ac3H11_1779 are separated by 94 nucleotides Ac3H11_1779 and Ac3H11_1767 are separated by 74 nucleotides
Ac3H11_1766 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 379,923 to 381,038
_1766
Ac3H11_1779 - tRNA-Ser-CGA, at 381,133 to 381,219
_1779
Ac3H11_1767 - L-lactate dehydrogenase (EC 1.1.2.3), at 381,294 to 382,553
_1767
Position (kb) 381
382 Strain fitness (log2 ratio) -2
-1
0
1 at 380.154 kb on + strand, within Ac3H11_1766 at 380.154 kb on + strand, within Ac3H11_1766 at 380.155 kb on - strand, within Ac3H11_1766 at 380.155 kb on - strand, within Ac3H11_1766 at 380.155 kb on - strand, within Ac3H11_1766 at 380.463 kb on + strand, within Ac3H11_1766 at 380.463 kb on + strand, within Ac3H11_1766 at 380.463 kb on + strand, within Ac3H11_1766 at 380.464 kb on - strand, within Ac3H11_1766 at 380.464 kb on - strand, within Ac3H11_1766 at 380.550 kb on + strand, within Ac3H11_1766 at 380.550 kb on + strand, within Ac3H11_1766 at 380.551 kb on - strand, within Ac3H11_1766 at 380.640 kb on + strand, within Ac3H11_1766 at 380.994 kb on + strand at 380.995 kb on - strand at 381.044 kb on + strand at 381.044 kb on + strand at 381.045 kb on - strand at 381.045 kb on - strand at 381.045 kb on - strand at 381.437 kb on - strand, within Ac3H11_1767 at 381.437 kb on - strand, within Ac3H11_1767 at 381.437 kb on - strand, within Ac3H11_1767 at 381.972 kb on + strand, within Ac3H11_1767 at 381.972 kb on + strand, within Ac3H11_1767 at 381.972 kb on + strand, within Ac3H11_1767 at 381.972 kb on + strand, within Ac3H11_1767 at 381.972 kb on + strand, within Ac3H11_1767 at 381.972 kb on + strand, within Ac3H11_1767 at 381.973 kb on - strand, within Ac3H11_1767 at 381.973 kb on - strand, within Ac3H11_1767 at 382.057 kb on - strand, within Ac3H11_1767 at 382.060 kb on + strand, within Ac3H11_1767 at 382.061 kb on - strand, within Ac3H11_1767 at 382.061 kb on - strand, within Ac3H11_1767 at 382.061 kb on - strand, within Ac3H11_1767 at 382.061 kb on - strand, within Ac3H11_1767 at 382.061 kb on - strand, within Ac3H11_1767 at 382.061 kb on - strand, within Ac3H11_1767
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.02 mg/ml remove 380,154 + Ac3H11_1766 0.21 -0.7 380,154 + Ac3H11_1766 0.21 +0.1 380,155 - Ac3H11_1766 0.21 +0.1 380,155 - Ac3H11_1766 0.21 -0.9 380,155 - Ac3H11_1766 0.21 -0.7 380,463 + Ac3H11_1766 0.48 +1.0 380,463 + Ac3H11_1766 0.48 -0.2 380,463 + Ac3H11_1766 0.48 -1.3 380,464 - Ac3H11_1766 0.48 -1.7 380,464 - Ac3H11_1766 0.48 -0.3 380,550 + Ac3H11_1766 0.56 -1.3 380,550 + Ac3H11_1766 0.56 +0.3 380,551 - Ac3H11_1766 0.56 +0.6 380,640 + Ac3H11_1766 0.64 -1.8 380,994 + -0.1 380,995 - +0.3 381,044 + -0.6 381,044 + -0.4 381,045 - -0.1 381,045 - -0.2 381,045 - -0.1 381,437 - Ac3H11_1767 0.11 +1.3 381,437 - Ac3H11_1767 0.11 +0.8 381,437 - Ac3H11_1767 0.11 +0.3 381,972 + Ac3H11_1767 0.54 -0.3 381,972 + Ac3H11_1767 0.54 +0.1 381,972 + Ac3H11_1767 0.54 -1.3 381,972 + Ac3H11_1767 0.54 +1.0 381,972 + Ac3H11_1767 0.54 +0.7 381,972 + Ac3H11_1767 0.54 +0.4 381,973 - Ac3H11_1767 0.54 +1.0 381,973 - Ac3H11_1767 0.54 -1.2 382,057 - Ac3H11_1767 0.61 -0.8 382,060 + Ac3H11_1767 0.61 -0.1 382,061 - Ac3H11_1767 0.61 -0.6 382,061 - Ac3H11_1767 0.61 -0.7 382,061 - Ac3H11_1767 0.61 -0.6 382,061 - Ac3H11_1767 0.61 +0.2 382,061 - Ac3H11_1767 0.61 -1.6 382,061 - Ac3H11_1767 0.61 +0.4
Or see this region's nucleotide sequence