Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_10710

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_10700 and AO353_10705 are separated by 123 nucleotidesAO353_10705 and AO353_10710 overlap by 1 nucleotidesAO353_10710 and AO353_10715 are separated by 112 nucleotides AO353_10700: AO353_10700 - hypothetical protein, at 2,345,453 to 2,345,884 _10700 AO353_10705: AO353_10705 - tryptophan synthase subunit alpha, at 2,346,008 to 2,346,820 _10705 AO353_10710: AO353_10710 - tryptophan synthase subunit beta, at 2,346,820 to 2,348,040 _10710 AO353_10715: AO353_10715 - LysR family transcriptional regulator, at 2,348,153 to 2,349,043 _10715 AO353_10720: AO353_10720 - hypothetical protein, at 2,349,040 to 2,349,366 _10720 Position (kb) 2346 2347 2348 2349Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2345.846 kb on + strandat 2345.846 kb on + strandat 2345.846 kb on + strandat 2345.846 kb on + strandat 2345.846 kb on + strandat 2345.846 kb on + strandat 2345.846 kb on + strandat 2345.846 kb on + strandat 2345.847 kb on - strandat 2345.847 kb on - strandat 2345.847 kb on - strandat 2345.847 kb on - strandat 2345.847 kb on - strandat 2345.847 kb on - strandat 2345.925 kb on + strandat 2345.925 kb on + strandat 2345.925 kb on + strandat 2345.925 kb on + strandat 2345.925 kb on + strandat 2345.925 kb on + strandat 2345.925 kb on + strandat 2345.925 kb on + strandat 2345.926 kb on - strandat 2345.926 kb on - strandat 2345.926 kb on - strandat 2345.926 kb on - strandat 2345.926 kb on - strandat 2345.926 kb on - strandat 2345.926 kb on - strandat 2345.926 kb on - strandat 2345.926 kb on - strandat 2345.926 kb on - strandat 2345.956 kb on + strandat 2345.956 kb on + strandat 2345.956 kb on + strandat 2345.956 kb on + strandat 2345.956 kb on + strandat 2345.956 kb on + strandat 2345.956 kb on + strandat 2345.956 kb on + strandat 2345.956 kb on + strandat 2345.956 kb on + strandat 2345.957 kb on - strandat 2345.957 kb on - strandat 2345.957 kb on - strandat 2345.957 kb on - strandat 2345.957 kb on - strandat 2345.960 kb on + strandat 2345.960 kb on + strandat 2345.960 kb on + strandat 2345.960 kb on + strandat 2345.960 kb on + strandat 2345.960 kb on + strandat 2345.960 kb on + strandat 2345.960 kb on + strandat 2345.960 kb on + strandat 2345.960 kb on + strandat 2345.960 kb on + strandat 2345.960 kb on + strandat 2345.960 kb on + strandat 2345.961 kb on - strandat 2345.961 kb on - strandat 2345.961 kb on - strandat 2345.961 kb on - strandat 2345.961 kb on - strandat 2345.961 kb on - strandat 2345.961 kb on - strandat 2345.961 kb on - strandat 2345.961 kb on - strandat 2345.961 kb on - strandat 2345.980 kb on + strandat 2345.980 kb on + strandat 2345.980 kb on + strandat 2345.980 kb on + strandat 2345.981 kb on - strandat 2345.981 kb on - strandat 2345.991 kb on + strandat 2345.992 kb on - strandat 2345.992 kb on - strandat 2346.003 kb on + strandat 2346.003 kb on + strandat 2346.003 kb on + strandat 2346.003 kb on + strandat 2346.003 kb on + strandat 2346.003 kb on + strandat 2346.003 kb on + strandat 2346.004 kb on - strandat 2346.004 kb on - strandat 2346.004 kb on - strandat 2346.004 kb on - strandat 2346.004 kb on - strandat 2346.004 kb on - strandat 2346.009 kb on + strandat 2346.009 kb on + strandat 2346.009 kb on + strandat 2346.009 kb on + strandat 2346.009 kb on + strandat 2346.009 kb on + strandat 2346.010 kb on - strandat 2346.010 kb on - strandat 2346.025 kb on + strandat 2346.025 kb on + strandat 2346.026 kb on - strandat 2346.026 kb on - strandat 2346.295 kb on - strand, within AO353_10705at 2346.295 kb on - strand, within AO353_10705at 2346.295 kb on - strand, within AO353_10705at 2346.295 kb on - strand, within AO353_10705at 2346.295 kb on - strand, within AO353_10705at 2346.295 kb on - strand, within AO353_10705at 2346.298 kb on - strand, within AO353_10705at 2346.298 kb on - strand, within AO353_10705at 2346.416 kb on - strand, within AO353_10705at 2346.416 kb on - strand, within AO353_10705at 2346.499 kb on - strand, within AO353_10705at 2346.499 kb on - strand, within AO353_10705at 2346.733 kb on - strand, within AO353_10705at 2346.733 kb on - strand, within AO353_10705at 2346.733 kb on - strand, within AO353_10705at 2346.733 kb on - strand, within AO353_10705at 2346.733 kb on - strand, within AO353_10705at 2346.733 kb on - strand, within AO353_10705at 2346.733 kb on - strand, within AO353_10705at 2346.850 kb on - strandat 2346.850 kb on - strandat 2346.850 kb on - strandat 2346.982 kb on - strand, within AO353_10710at 2346.982 kb on - strand, within AO353_10710at 2347.047 kb on - strand, within AO353_10710at 2347.047 kb on - strand, within AO353_10710at 2347.047 kb on - strand, within AO353_10710at 2347.047 kb on - strand, within AO353_10710at 2347.047 kb on - strand, within AO353_10710at 2347.193 kb on - strand, within AO353_10710at 2347.461 kb on - strand, within AO353_10710at 2347.461 kb on - strand, within AO353_10710at 2347.461 kb on - strand, within AO353_10710at 2347.461 kb on - strand, within AO353_10710at 2347.461 kb on - strand, within AO353_10710at 2347.620 kb on - strand, within AO353_10710at 2347.620 kb on - strand, within AO353_10710at 2347.620 kb on - strand, within AO353_10710at 2347.620 kb on - strand, within AO353_10710at 2347.620 kb on - strand, within AO353_10710at 2347.797 kb on - strand, within AO353_10710at 2347.797 kb on - strand, within AO353_10710at 2347.797 kb on - strand, within AO353_10710at 2347.797 kb on - strand, within AO353_10710at 2347.842 kb on - strand, within AO353_10710at 2347.842 kb on - strand, within AO353_10710at 2347.866 kb on - strand, within AO353_10710at 2347.866 kb on - strand, within AO353_10710at 2347.926 kb on - strandat 2347.926 kb on - strandat 2348.029 kb on - strandat 2348.029 kb on - strandat 2348.029 kb on - strandat 2348.029 kb on - strandat 2348.085 kb on + strandat 2348.150 kb on - strandat 2348.280 kb on + strand, within AO353_10715at 2348.281 kb on - strand, within AO353_10715at 2348.358 kb on + strand, within AO353_10715at 2348.627 kb on + strand, within AO353_10715at 2348.627 kb on + strand, within AO353_10715at 2348.627 kb on + strand, within AO353_10715at 2348.628 kb on - strand, within AO353_10715at 2348.628 kb on - strand, within AO353_10715at 2348.628 kb on - strand, within AO353_10715at 2348.831 kb on + strand, within AO353_10715at 2348.831 kb on + strand, within AO353_10715at 2348.831 kb on + strand, within AO353_10715at 2348.832 kb on - strand, within AO353_10715at 2348.832 kb on - strand, within AO353_10715at 2348.832 kb on - strand, within AO353_10715at 2348.832 kb on - strand, within AO353_10715at 2348.832 kb on - strand, within AO353_10715at 2348.832 kb on - strand, within AO353_10715at 2348.832 kb on - strand, within AO353_10715at 2348.832 kb on - strand, within AO353_10715at 2348.834 kb on + strand, within AO353_10715at 2348.834 kb on + strand, within AO353_10715at 2348.835 kb on - strand, within AO353_10715at 2348.835 kb on - strand, within AO353_10715at 2348.835 kb on - strand, within AO353_10715at 2348.835 kb on - strand, within AO353_10715at 2348.835 kb on - strand, within AO353_10715at 2348.835 kb on - strand, within AO353_10715

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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2,345,846 + +1.1
2,345,846 + +1.1
2,345,846 + +0.5
2,345,846 + +1.5
2,345,846 + -1.1
2,345,846 + -0.0
2,345,846 + +0.3
2,345,846 + +1.5
2,345,847 - +0.2
2,345,847 - -0.1
2,345,847 - +0.7
2,345,847 - +0.8
2,345,847 - +0.3
2,345,847 - +3.5
2,345,925 + +0.1
2,345,925 + -0.4
2,345,925 + +0.3
2,345,925 + -0.1
2,345,925 + +0.2
2,345,925 + +1.1
2,345,925 + -0.8
2,345,925 + +0.4
2,345,926 - -0.2
2,345,926 - -0.6
2,345,926 - -0.9
2,345,926 - -0.0
2,345,926 - -0.9
2,345,926 - -0.8
2,345,926 - -0.1
2,345,926 - -1.0
2,345,926 - -1.1
2,345,926 - +0.1
2,345,956 + +0.4
2,345,956 + -0.1
2,345,956 + -0.6
2,345,956 + -0.7
2,345,956 + -1.4
2,345,956 + -0.5
2,345,956 + -2.0
2,345,956 + +0.0
2,345,956 + +0.6
2,345,956 + -0.5
2,345,957 - -0.6
2,345,957 - -1.1
2,345,957 - -1.1
2,345,957 - +0.2
2,345,957 - -0.6
2,345,960 + +0.2
2,345,960 + -0.2
2,345,960 + -0.1
2,345,960 + -1.6
2,345,960 + -0.9
2,345,960 + -0.4
2,345,960 + -2.3
2,345,960 + +0.3
2,345,960 + -0.9
2,345,960 + +2.3
2,345,960 + -1.0
2,345,960 + +0.3
2,345,960 + -0.3
2,345,961 - -0.9
2,345,961 - +0.1
2,345,961 - -0.2
2,345,961 - -0.6
2,345,961 - -2.0
2,345,961 - -1.0
2,345,961 - -0.3
2,345,961 - -0.7
2,345,961 - +0.1
2,345,961 - -1.9
2,345,980 + -0.1
2,345,980 + -0.4
2,345,980 + -1.0
2,345,980 + -0.3
2,345,981 - +1.9
2,345,981 - -0.7
2,345,991 + -1.1
2,345,992 - -1.3
2,345,992 - -1.3
2,346,003 + -0.0
2,346,003 + -0.7
2,346,003 + -0.5
2,346,003 + -1.0
2,346,003 + -0.8
2,346,003 + +0.1
2,346,003 + -1.3
2,346,004 - -2.6
2,346,004 - +0.0
2,346,004 - -2.0
2,346,004 - +1.8
2,346,004 - -0.7
2,346,004 - +0.2
2,346,009 + -1.6
2,346,009 + +1.9
2,346,009 + -0.7
2,346,009 + -0.7
2,346,009 + -1.6
2,346,009 + -0.1
2,346,010 - +1.9
2,346,010 - -1.7
2,346,025 + +0.0
2,346,025 + -2.1
2,346,026 - +0.4
2,346,026 - -2.1
2,346,295 - AO353_10705 0.35 -0.7
2,346,295 - AO353_10705 0.35 -1.6
2,346,295 - AO353_10705 0.35 -0.4
2,346,295 - AO353_10705 0.35 -2.3
2,346,295 - AO353_10705 0.35 -0.0
2,346,295 - AO353_10705 0.35 -1.6
2,346,298 - AO353_10705 0.36 -0.7
2,346,298 - AO353_10705 0.36 -1.1
2,346,416 - AO353_10705 0.50 -2.3
2,346,416 - AO353_10705 0.50 -0.9
2,346,499 - AO353_10705 0.60 +0.1
2,346,499 - AO353_10705 0.60 +1.9
2,346,733 - AO353_10705 0.89 -0.4
2,346,733 - AO353_10705 0.89 -1.1
2,346,733 - AO353_10705 0.89 -1.1
2,346,733 - AO353_10705 0.89 -2.6
2,346,733 - AO353_10705 0.89 -2.7
2,346,733 - AO353_10705 0.89 -1.8
2,346,733 - AO353_10705 0.89 +0.8
2,346,850 - -0.4
2,346,850 - -1.9
2,346,850 - -1.8
2,346,982 - AO353_10710 0.13 -0.4
2,346,982 - AO353_10710 0.13 -0.9
2,347,047 - AO353_10710 0.19 -0.7
2,347,047 - AO353_10710 0.19 -2.3
2,347,047 - AO353_10710 0.19 -2.3
2,347,047 - AO353_10710 0.19 -0.4
2,347,047 - AO353_10710 0.19 -2.7
2,347,193 - AO353_10710 0.31 -1.3
2,347,461 - AO353_10710 0.52 -1.1
2,347,461 - AO353_10710 0.52 -1.4
2,347,461 - AO353_10710 0.52 -0.1
2,347,461 - AO353_10710 0.52 -0.7
2,347,461 - AO353_10710 0.52 -1.8
2,347,620 - AO353_10710 0.66 -1.3
2,347,620 - AO353_10710 0.66 -1.6
2,347,620 - AO353_10710 0.66 -0.7
2,347,620 - AO353_10710 0.66 -1.6
2,347,620 - AO353_10710 0.66 -0.9
2,347,797 - AO353_10710 0.80 -1.4
2,347,797 - AO353_10710 0.80 -3.6
2,347,797 - AO353_10710 0.80 -0.7
2,347,797 - AO353_10710 0.80 -3.4
2,347,842 - AO353_10710 0.84 +2.7
2,347,842 - AO353_10710 0.84 +0.4
2,347,866 - AO353_10710 0.86 +0.3
2,347,866 - AO353_10710 0.86 -1.3
2,347,926 - -1.4
2,347,926 - -1.3
2,348,029 - -2.3
2,348,029 - -0.9
2,348,029 - -2.3
2,348,029 - -0.7
2,348,085 + -3.1
2,348,150 - +0.6
2,348,280 + AO353_10715 0.14 -1.3
2,348,281 - AO353_10715 0.14 +0.2
2,348,358 + AO353_10715 0.23 +0.7
2,348,627 + AO353_10715 0.53 +0.3
2,348,627 + AO353_10715 0.53 +0.4
2,348,627 + AO353_10715 0.53 -1.1
2,348,628 - AO353_10715 0.53 +0.7
2,348,628 - AO353_10715 0.53 -0.7
2,348,628 - AO353_10715 0.53 -0.8
2,348,831 + AO353_10715 0.76 +0.6
2,348,831 + AO353_10715 0.76 -0.9
2,348,831 + AO353_10715 0.76 -1.3
2,348,832 - AO353_10715 0.76 -0.7
2,348,832 - AO353_10715 0.76 -0.0
2,348,832 - AO353_10715 0.76 -0.4
2,348,832 - AO353_10715 0.76 -0.3
2,348,832 - AO353_10715 0.76 -1.1
2,348,832 - AO353_10715 0.76 -1.6
2,348,832 - AO353_10715 0.76 -2.3
2,348,832 - AO353_10715 0.76 -0.8
2,348,834 + AO353_10715 0.76 -0.1
2,348,834 + AO353_10715 0.76 -0.6
2,348,835 - AO353_10715 0.77 +0.7
2,348,835 - AO353_10715 0.77 -1.1
2,348,835 - AO353_10715 0.77 -3.2
2,348,835 - AO353_10715 0.77 -0.7
2,348,835 - AO353_10715 0.77 +0.2
2,348,835 - AO353_10715 0.77 -0.2

Or see this region's nucleotide sequence