Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_06090 and AO353_06095 are separated by 109 nucleotides AO353_06095 and AO353_06100 are separated by 11 nucleotides AO353_06100 and AO353_06105 are separated by 614 nucleotides
AO353_06090: AO353_06090 - LysR family transcriptional regulator, at 1,358,892 to 1,359,812
_06090
AO353_06095: AO353_06095 - TetR family transcriptional regulator, at 1,359,922 to 1,360,572
_06095
AO353_06100: AO353_06100 - thymidylate synthase, at 1,360,584 to 1,361,165
_06100
AO353_06105: AO353_06105 - short-chain dehydrogenase, at 1,361,780 to 1,362,466
_06105
Position (kb)
1360
1361
1362 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1359.636 kb on + strand, within AO353_06090 at 1359.637 kb on - strand, within AO353_06090 at 1359.637 kb on - strand, within AO353_06090 at 1359.637 kb on - strand, within AO353_06090 at 1359.637 kb on - strand, within AO353_06090 at 1359.637 kb on - strand, within AO353_06090 at 1359.646 kb on - strand, within AO353_06090 at 1359.660 kb on + strand, within AO353_06090 at 1359.720 kb on + strand, within AO353_06090 at 1359.720 kb on + strand, within AO353_06090 at 1359.720 kb on + strand, within AO353_06090 at 1359.720 kb on + strand, within AO353_06090 at 1359.720 kb on + strand, within AO353_06090 at 1359.721 kb on - strand at 1359.721 kb on - strand at 1359.844 kb on - strand at 1359.844 kb on - strand at 1359.951 kb on + strand at 1359.951 kb on + strand at 1359.952 kb on - strand at 1359.952 kb on - strand at 1359.952 kb on - strand at 1359.952 kb on - strand at 1360.093 kb on + strand, within AO353_06095 at 1360.093 kb on + strand, within AO353_06095 at 1360.093 kb on + strand, within AO353_06095 at 1360.093 kb on + strand, within AO353_06095 at 1360.094 kb on - strand, within AO353_06095 at 1360.094 kb on - strand, within AO353_06095 at 1360.094 kb on - strand, within AO353_06095 at 1360.094 kb on - strand, within AO353_06095 at 1360.094 kb on - strand, within AO353_06095 at 1360.094 kb on - strand, within AO353_06095 at 1360.094 kb on - strand, within AO353_06095 at 1360.094 kb on - strand, within AO353_06095 at 1360.096 kb on + strand, within AO353_06095 at 1360.096 kb on + strand, within AO353_06095 at 1360.096 kb on + strand, within AO353_06095 at 1360.096 kb on + strand, within AO353_06095 at 1360.096 kb on + strand, within AO353_06095 at 1360.096 kb on + strand, within AO353_06095 at 1360.096 kb on + strand, within AO353_06095 at 1360.096 kb on + strand, within AO353_06095 at 1360.097 kb on - strand, within AO353_06095 at 1360.097 kb on - strand, within AO353_06095 at 1360.097 kb on - strand, within AO353_06095 at 1360.097 kb on - strand, within AO353_06095 at 1360.097 kb on - strand, within AO353_06095 at 1360.097 kb on - strand, within AO353_06095 at 1360.097 kb on - strand, within AO353_06095 at 1360.097 kb on - strand, within AO353_06095 at 1360.097 kb on - strand, within AO353_06095 at 1360.097 kb on - strand, within AO353_06095 at 1360.097 kb on - strand, within AO353_06095 at 1360.097 kb on - strand, within AO353_06095 at 1360.120 kb on + strand, within AO353_06095 at 1360.120 kb on + strand, within AO353_06095 at 1360.120 kb on + strand, within AO353_06095 at 1360.120 kb on + strand, within AO353_06095 at 1360.120 kb on + strand, within AO353_06095 at 1360.120 kb on + strand, within AO353_06095 at 1360.121 kb on - strand, within AO353_06095 at 1360.121 kb on - strand, within AO353_06095 at 1360.121 kb on - strand, within AO353_06095 at 1360.121 kb on - strand, within AO353_06095 at 1360.121 kb on - strand, within AO353_06095 at 1360.121 kb on - strand, within AO353_06095 at 1360.167 kb on + strand, within AO353_06095 at 1360.168 kb on - strand, within AO353_06095 at 1360.168 kb on - strand, within AO353_06095 at 1360.168 kb on - strand, within AO353_06095 at 1360.176 kb on + strand, within AO353_06095 at 1360.176 kb on + strand, within AO353_06095 at 1360.214 kb on - strand, within AO353_06095 at 1360.309 kb on + strand, within AO353_06095 at 1360.309 kb on + strand, within AO353_06095 at 1360.394 kb on + strand, within AO353_06095 at 1360.394 kb on + strand, within AO353_06095 at 1360.394 kb on + strand, within AO353_06095 at 1360.395 kb on - strand, within AO353_06095 at 1360.395 kb on - strand, within AO353_06095 at 1360.395 kb on - strand, within AO353_06095 at 1360.442 kb on - strand, within AO353_06095 at 1360.442 kb on - strand, within AO353_06095 at 1360.483 kb on - strand, within AO353_06095 at 1360.522 kb on - strand at 1360.522 kb on - strand at 1360.522 kb on - strand at 1360.534 kb on - strand at 1360.542 kb on + strand at 1360.543 kb on - strand at 1360.543 kb on - strand at 1360.570 kb on + strand at 1360.570 kb on + strand at 1360.570 kb on + strand at 1360.570 kb on + strand at 1360.570 kb on + strand at 1360.571 kb on - strand at 1360.571 kb on - strand at 1360.571 kb on - strand at 1360.571 kb on - strand at 1360.571 kb on - strand at 1360.571 kb on - strand at 1360.571 kb on - strand at 1360.571 kb on - strand at 1360.592 kb on + strand at 1360.592 kb on + strand at 1360.592 kb on + strand at 1360.592 kb on + strand at 1360.906 kb on - strand, within AO353_06100 at 1360.922 kb on + strand, within AO353_06100 at 1360.922 kb on + strand, within AO353_06100 at 1360.923 kb on - strand, within AO353_06100 at 1361.109 kb on - strand at 1361.109 kb on - strand at 1361.240 kb on + strand at 1361.240 kb on + strand at 1361.241 kb on - strand at 1361.241 kb on - strand at 1361.425 kb on + strand at 1361.425 kb on + strand at 1361.425 kb on + strand at 1361.425 kb on + strand at 1361.426 kb on - strand at 1361.426 kb on - strand at 1361.427 kb on + strand at 1361.427 kb on + strand at 1361.427 kb on + strand at 1361.427 kb on + strand at 1361.427 kb on + strand at 1361.427 kb on + strand at 1361.427 kb on + strand at 1361.427 kb on + strand at 1361.427 kb on + strand at 1361.428 kb on - strand at 1361.428 kb on - strand at 1361.428 kb on - strand at 1361.428 kb on - strand at 1361.428 kb on - strand at 1361.437 kb on - strand at 1361.437 kb on - strand at 1361.437 kb on - strand at 1361.437 kb on - strand at 1361.437 kb on - strand at 1361.450 kb on - strand at 1361.450 kb on - strand at 1361.450 kb on - strand at 1361.458 kb on + strand at 1361.458 kb on + strand at 1361.459 kb on - strand at 1361.487 kb on + strand at 1361.487 kb on + strand at 1361.487 kb on + strand at 1361.487 kb on + strand at 1361.487 kb on + strand at 1361.488 kb on - strand at 1361.488 kb on - strand at 1361.488 kb on - strand at 1361.545 kb on + strand at 1361.621 kb on + strand at 1361.621 kb on + strand at 1361.621 kb on + strand at 1361.621 kb on + strand at 1361.621 kb on + strand at 1361.622 kb on - strand at 1361.622 kb on - strand at 1361.625 kb on + strand at 1361.626 kb on - strand at 1361.626 kb on - strand at 1361.626 kb on - strand at 1361.644 kb on + strand at 1361.644 kb on + strand at 1361.644 kb on + strand at 1361.644 kb on + strand at 1361.645 kb on - strand at 1361.645 kb on - strand at 1361.702 kb on + strand at 1361.703 kb on - strand at 1361.703 kb on - strand at 1361.726 kb on + strand at 1361.763 kb on + strand at 1361.763 kb on + strand at 1361.763 kb on + strand at 1361.764 kb on - strand at 1361.764 kb on - strand at 1361.764 kb on - strand at 1361.764 kb on - strand at 1361.785 kb on + strand at 1361.785 kb on + strand at 1361.786 kb on - strand at 1361.790 kb on + strand at 1361.791 kb on - strand at 1361.887 kb on + strand, within AO353_06105 at 1361.928 kb on + strand, within AO353_06105 at 1362.162 kb on + strand, within AO353_06105 at 1362.162 kb on + strand, within AO353_06105 at 1362.162 kb on + strand, within AO353_06105 at 1362.162 kb on + strand, within AO353_06105 at 1362.163 kb on - strand, within AO353_06105 at 1362.163 kb on - strand, within AO353_06105
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 1,359,636 + AO353_06090 0.81 -0.2 1,359,637 - AO353_06090 0.81 +0.1 1,359,637 - AO353_06090 0.81 +1.6 1,359,637 - AO353_06090 0.81 -1.1 1,359,637 - AO353_06090 0.81 -0.8 1,359,637 - AO353_06090 0.81 -0.1 1,359,646 - AO353_06090 0.82 -1.0 1,359,660 + AO353_06090 0.83 +0.8 1,359,720 + AO353_06090 0.90 -0.0 1,359,720 + AO353_06090 0.90 -0.0 1,359,720 + AO353_06090 0.90 -0.0 1,359,720 + AO353_06090 0.90 +0.3 1,359,720 + AO353_06090 0.90 +0.3 1,359,721 - +0.3 1,359,721 - +0.3 1,359,844 - -0.4 1,359,844 - -0.0 1,359,951 + +1.2 1,359,951 + +1.0 1,359,952 - +0.9 1,359,952 - +0.6 1,359,952 - -0.0 1,359,952 - -0.2 1,360,093 + AO353_06095 0.26 +0.1 1,360,093 + AO353_06095 0.26 +0.6 1,360,093 + AO353_06095 0.26 -0.0 1,360,093 + AO353_06095 0.26 -1.7 1,360,094 - AO353_06095 0.26 +0.6 1,360,094 - AO353_06095 0.26 +0.7 1,360,094 - AO353_06095 0.26 -0.3 1,360,094 - AO353_06095 0.26 +0.6 1,360,094 - AO353_06095 0.26 +0.9 1,360,094 - AO353_06095 0.26 -1.3 1,360,094 - AO353_06095 0.26 -1.9 1,360,094 - AO353_06095 0.26 -0.1 1,360,096 + AO353_06095 0.27 +0.1 1,360,096 + AO353_06095 0.27 -0.4 1,360,096 + AO353_06095 0.27 -0.1 1,360,096 + AO353_06095 0.27 +0.2 1,360,096 + AO353_06095 0.27 -0.5 1,360,096 + AO353_06095 0.27 -0.5 1,360,096 + AO353_06095 0.27 +0.6 1,360,096 + AO353_06095 0.27 -1.8 1,360,097 - AO353_06095 0.27 -0.9 1,360,097 - AO353_06095 0.27 -1.6 1,360,097 - AO353_06095 0.27 -0.4 1,360,097 - AO353_06095 0.27 -0.2 1,360,097 - AO353_06095 0.27 -0.7 1,360,097 - AO353_06095 0.27 -0.4 1,360,097 - AO353_06095 0.27 +1.6 1,360,097 - AO353_06095 0.27 +0.1 1,360,097 - AO353_06095 0.27 -0.2 1,360,097 - AO353_06095 0.27 +0.7 1,360,097 - AO353_06095 0.27 -1.9 1,360,097 - AO353_06095 0.27 +0.2 1,360,120 + AO353_06095 0.30 +0.8 1,360,120 + AO353_06095 0.30 -0.5 1,360,120 + AO353_06095 0.30 +0.6 1,360,120 + AO353_06095 0.30 +0.8 1,360,120 + AO353_06095 0.30 -1.0 1,360,120 + AO353_06095 0.30 -0.3 1,360,121 - AO353_06095 0.31 +0.8 1,360,121 - AO353_06095 0.31 -0.2 1,360,121 - AO353_06095 0.31 +1.6 1,360,121 - AO353_06095 0.31 -0.0 1,360,121 - AO353_06095 0.31 +0.3 1,360,121 - AO353_06095 0.31 -2.3 1,360,167 + AO353_06095 0.38 -0.9 1,360,168 - AO353_06095 0.38 -0.2 1,360,168 - AO353_06095 0.38 +0.4 1,360,168 - AO353_06095 0.38 -0.4 1,360,176 + AO353_06095 0.39 -0.7 1,360,176 + AO353_06095 0.39 +0.2 1,360,214 - AO353_06095 0.45 -0.3 1,360,309 + AO353_06095 0.59 -1.6 1,360,309 + AO353_06095 0.59 +0.1 1,360,394 + AO353_06095 0.73 +0.1 1,360,394 + AO353_06095 0.73 -0.3 1,360,394 + AO353_06095 0.73 -0.0 1,360,395 - AO353_06095 0.73 -0.5 1,360,395 - AO353_06095 0.73 +0.2 1,360,395 - AO353_06095 0.73 -0.1 1,360,442 - AO353_06095 0.80 -1.2 1,360,442 - AO353_06095 0.80 -0.3 1,360,483 - AO353_06095 0.86 +0.0 1,360,522 - +0.8 1,360,522 - -1.6 1,360,522 - -0.9 1,360,534 - -0.4 1,360,542 + -0.5 1,360,543 - -0.2 1,360,543 - +0.7 1,360,570 + +0.3 1,360,570 + +0.6 1,360,570 + -0.1 1,360,570 + -0.2 1,360,570 + -0.7 1,360,571 - -0.2 1,360,571 - +0.4 1,360,571 - -1.0 1,360,571 - +0.5 1,360,571 - -0.1 1,360,571 - +0.4 1,360,571 - -0.2 1,360,571 - +0.9 1,360,592 + +0.6 1,360,592 + +0.6 1,360,592 + +1.6 1,360,592 + -0.4 1,360,906 - AO353_06100 0.55 -0.4 1,360,922 + AO353_06100 0.58 -0.0 1,360,922 + AO353_06100 0.58 -0.8 1,360,923 - AO353_06100 0.58 -1.1 1,361,109 - +0.1 1,361,109 - -0.0 1,361,240 + +0.3 1,361,240 + -1.2 1,361,241 - -0.0 1,361,241 - +1.0 1,361,425 + -0.7 1,361,425 + +0.1 1,361,425 + +0.1 1,361,425 + -0.1 1,361,426 - -0.0 1,361,426 - -1.9 1,361,427 + -0.7 1,361,427 + -0.2 1,361,427 + +0.3 1,361,427 + +1.7 1,361,427 + +0.3 1,361,427 + +0.1 1,361,427 + +0.6 1,361,427 + +0.0 1,361,427 + +0.4 1,361,428 - +0.6 1,361,428 - -0.7 1,361,428 - -0.4 1,361,428 - -0.4 1,361,428 - -1.0 1,361,437 - -0.9 1,361,437 - -0.2 1,361,437 - -0.0 1,361,437 - -0.6 1,361,437 - +0.4 1,361,450 - +0.0 1,361,450 - -0.0 1,361,450 - +0.6 1,361,458 + -0.0 1,361,458 + +0.3 1,361,459 - -1.6 1,361,487 + -0.3 1,361,487 + +0.2 1,361,487 + -0.1 1,361,487 + -0.2 1,361,487 + +0.8 1,361,488 - +1.4 1,361,488 - +0.3 1,361,488 - +0.7 1,361,545 + +0.8 1,361,621 + -0.3 1,361,621 + -0.3 1,361,621 + -1.2 1,361,621 + -0.8 1,361,621 + +0.6 1,361,622 - -0.5 1,361,622 - -0.7 1,361,625 + +0.8 1,361,626 - -0.1 1,361,626 - +1.0 1,361,626 - +0.1 1,361,644 + +1.0 1,361,644 + +0.2 1,361,644 + +0.4 1,361,644 + +0.5 1,361,645 - +0.3 1,361,645 - +0.8 1,361,702 + -1.4 1,361,703 - -0.9 1,361,703 - +1.2 1,361,726 + +0.8 1,361,763 + -0.1 1,361,763 + -1.6 1,361,763 + -0.6 1,361,764 - +2.6 1,361,764 - -2.6 1,361,764 - -0.6 1,361,764 - -1.4 1,361,785 + -0.3 1,361,785 + -0.5 1,361,786 - +0.1 1,361,790 + +0.3 1,361,791 - +1.0 1,361,887 + AO353_06105 0.16 -0.9 1,361,928 + AO353_06105 0.22 -1.2 1,362,162 + AO353_06105 0.56 +0.1 1,362,162 + AO353_06105 0.56 -0.5 1,362,162 + AO353_06105 0.56 +0.6 1,362,162 + AO353_06105 0.56 -0.7 1,362,163 - AO353_06105 0.56 -1.2 1,362,163 - AO353_06105 0.56 +0.4
Or see this region's nucleotide sequence