Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_06100

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_06090 and AO353_06095 are separated by 109 nucleotidesAO353_06095 and AO353_06100 are separated by 11 nucleotidesAO353_06100 and AO353_06105 are separated by 614 nucleotides AO353_06090: AO353_06090 - LysR family transcriptional regulator, at 1,358,892 to 1,359,812 _06090 AO353_06095: AO353_06095 - TetR family transcriptional regulator, at 1,359,922 to 1,360,572 _06095 AO353_06100: AO353_06100 - thymidylate synthase, at 1,360,584 to 1,361,165 _06100 AO353_06105: AO353_06105 - short-chain dehydrogenase, at 1,361,780 to 1,362,466 _06105 Position (kb) 1360 1361 1362Strain fitness (log2 ratio) -2 -1 0 1 2at 1359.636 kb on + strand, within AO353_06090at 1359.637 kb on - strand, within AO353_06090at 1359.637 kb on - strand, within AO353_06090at 1359.637 kb on - strand, within AO353_06090at 1359.637 kb on - strand, within AO353_06090at 1359.637 kb on - strand, within AO353_06090at 1359.646 kb on - strand, within AO353_06090at 1359.660 kb on + strand, within AO353_06090at 1359.720 kb on + strand, within AO353_06090at 1359.720 kb on + strand, within AO353_06090at 1359.720 kb on + strand, within AO353_06090at 1359.720 kb on + strand, within AO353_06090at 1359.720 kb on + strand, within AO353_06090at 1359.721 kb on - strandat 1359.721 kb on - strandat 1359.844 kb on - strandat 1359.844 kb on - strandat 1359.951 kb on + strandat 1359.951 kb on + strandat 1359.952 kb on - strandat 1359.952 kb on - strandat 1359.952 kb on - strandat 1359.952 kb on - strandat 1360.093 kb on + strand, within AO353_06095at 1360.093 kb on + strand, within AO353_06095at 1360.093 kb on + strand, within AO353_06095at 1360.093 kb on + strand, within AO353_06095at 1360.094 kb on - strand, within AO353_06095at 1360.094 kb on - strand, within AO353_06095at 1360.094 kb on - strand, within AO353_06095at 1360.094 kb on - strand, within AO353_06095at 1360.094 kb on - strand, within AO353_06095at 1360.094 kb on - strand, within AO353_06095at 1360.094 kb on - strand, within AO353_06095at 1360.094 kb on - strand, within AO353_06095at 1360.096 kb on + strand, within AO353_06095at 1360.096 kb on + strand, within AO353_06095at 1360.096 kb on + strand, within AO353_06095at 1360.096 kb on + strand, within AO353_06095at 1360.096 kb on + strand, within AO353_06095at 1360.096 kb on + strand, within AO353_06095at 1360.096 kb on + strand, within AO353_06095at 1360.096 kb on + strand, within AO353_06095at 1360.097 kb on - strand, within AO353_06095at 1360.097 kb on - strand, within AO353_06095at 1360.097 kb on - strand, within AO353_06095at 1360.097 kb on - strand, within AO353_06095at 1360.097 kb on - strand, within AO353_06095at 1360.097 kb on - strand, within AO353_06095at 1360.097 kb on - strand, within AO353_06095at 1360.097 kb on - strand, within AO353_06095at 1360.097 kb on - strand, within AO353_06095at 1360.097 kb on - strand, within AO353_06095at 1360.097 kb on - strand, within AO353_06095at 1360.097 kb on - strand, within AO353_06095at 1360.120 kb on + strand, within AO353_06095at 1360.120 kb on + strand, within AO353_06095at 1360.120 kb on + strand, within AO353_06095at 1360.120 kb on + strand, within AO353_06095at 1360.120 kb on + strand, within AO353_06095at 1360.120 kb on + strand, within AO353_06095at 1360.121 kb on - strand, within AO353_06095at 1360.121 kb on - strand, within AO353_06095at 1360.121 kb on - strand, within AO353_06095at 1360.121 kb on - strand, within AO353_06095at 1360.121 kb on - strand, within AO353_06095at 1360.121 kb on - strand, within AO353_06095at 1360.167 kb on + strand, within AO353_06095at 1360.168 kb on - strand, within AO353_06095at 1360.168 kb on - strand, within AO353_06095at 1360.168 kb on - strand, within AO353_06095at 1360.176 kb on + strand, within AO353_06095at 1360.176 kb on + strand, within AO353_06095at 1360.214 kb on - strand, within AO353_06095at 1360.309 kb on + strand, within AO353_06095at 1360.309 kb on + strand, within AO353_06095at 1360.394 kb on + strand, within AO353_06095at 1360.394 kb on + strand, within AO353_06095at 1360.394 kb on + strand, within AO353_06095at 1360.395 kb on - strand, within AO353_06095at 1360.395 kb on - strand, within AO353_06095at 1360.395 kb on - strand, within AO353_06095at 1360.442 kb on - strand, within AO353_06095at 1360.442 kb on - strand, within AO353_06095at 1360.483 kb on - strand, within AO353_06095at 1360.522 kb on - strandat 1360.522 kb on - strandat 1360.522 kb on - strandat 1360.534 kb on - strandat 1360.542 kb on + strandat 1360.543 kb on - strandat 1360.543 kb on - strandat 1360.570 kb on + strandat 1360.570 kb on + strandat 1360.570 kb on + strandat 1360.570 kb on + strandat 1360.570 kb on + strandat 1360.571 kb on - strandat 1360.571 kb on - strandat 1360.571 kb on - strandat 1360.571 kb on - strandat 1360.571 kb on - strandat 1360.571 kb on - strandat 1360.571 kb on - strandat 1360.571 kb on - strandat 1360.592 kb on + strandat 1360.592 kb on + strandat 1360.592 kb on + strandat 1360.592 kb on + strandat 1360.906 kb on - strand, within AO353_06100at 1360.922 kb on + strand, within AO353_06100at 1360.922 kb on + strand, within AO353_06100at 1360.923 kb on - strand, within AO353_06100at 1361.109 kb on - strandat 1361.109 kb on - strandat 1361.240 kb on + strandat 1361.240 kb on + strandat 1361.241 kb on - strandat 1361.241 kb on - strandat 1361.425 kb on + strandat 1361.425 kb on + strandat 1361.425 kb on + strandat 1361.425 kb on + strandat 1361.426 kb on - strandat 1361.426 kb on - strandat 1361.427 kb on + strandat 1361.427 kb on + strandat 1361.427 kb on + strandat 1361.427 kb on + strandat 1361.427 kb on + strandat 1361.427 kb on + strandat 1361.427 kb on + strandat 1361.427 kb on + strandat 1361.427 kb on + strandat 1361.428 kb on - strandat 1361.428 kb on - strandat 1361.428 kb on - strandat 1361.428 kb on - strandat 1361.428 kb on - strandat 1361.437 kb on - strandat 1361.437 kb on - strandat 1361.437 kb on - strandat 1361.437 kb on - strandat 1361.437 kb on - strandat 1361.450 kb on - strandat 1361.450 kb on - strandat 1361.450 kb on - strandat 1361.458 kb on + strandat 1361.458 kb on + strandat 1361.459 kb on - strandat 1361.487 kb on + strandat 1361.487 kb on + strandat 1361.487 kb on + strandat 1361.487 kb on + strandat 1361.487 kb on + strandat 1361.488 kb on - strandat 1361.488 kb on - strandat 1361.488 kb on - strandat 1361.545 kb on + strandat 1361.621 kb on + strandat 1361.621 kb on + strandat 1361.621 kb on + strandat 1361.621 kb on + strandat 1361.621 kb on + strandat 1361.622 kb on - strandat 1361.622 kb on - strandat 1361.625 kb on + strandat 1361.626 kb on - strandat 1361.626 kb on - strandat 1361.626 kb on - strandat 1361.644 kb on + strandat 1361.644 kb on + strandat 1361.644 kb on + strandat 1361.644 kb on + strandat 1361.645 kb on - strandat 1361.645 kb on - strandat 1361.702 kb on + strandat 1361.703 kb on - strandat 1361.703 kb on - strandat 1361.726 kb on + strandat 1361.763 kb on + strandat 1361.763 kb on + strandat 1361.763 kb on + strandat 1361.764 kb on - strandat 1361.764 kb on - strandat 1361.764 kb on - strandat 1361.764 kb on - strandat 1361.785 kb on + strandat 1361.785 kb on + strandat 1361.786 kb on - strandat 1361.790 kb on + strandat 1361.791 kb on - strandat 1361.887 kb on + strand, within AO353_06105at 1361.928 kb on + strand, within AO353_06105at 1362.162 kb on + strand, within AO353_06105at 1362.162 kb on + strand, within AO353_06105at 1362.162 kb on + strand, within AO353_06105at 1362.162 kb on + strand, within AO353_06105at 1362.163 kb on - strand, within AO353_06105at 1362.163 kb on - strand, within AO353_06105

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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1,359,636 + AO353_06090 0.81 -0.2
1,359,637 - AO353_06090 0.81 +0.1
1,359,637 - AO353_06090 0.81 +1.6
1,359,637 - AO353_06090 0.81 -1.1
1,359,637 - AO353_06090 0.81 -0.8
1,359,637 - AO353_06090 0.81 -0.1
1,359,646 - AO353_06090 0.82 -1.0
1,359,660 + AO353_06090 0.83 +0.8
1,359,720 + AO353_06090 0.90 -0.0
1,359,720 + AO353_06090 0.90 -0.0
1,359,720 + AO353_06090 0.90 -0.0
1,359,720 + AO353_06090 0.90 +0.3
1,359,720 + AO353_06090 0.90 +0.3
1,359,721 - +0.3
1,359,721 - +0.3
1,359,844 - -0.4
1,359,844 - -0.0
1,359,951 + +1.2
1,359,951 + +1.0
1,359,952 - +0.9
1,359,952 - +0.6
1,359,952 - -0.0
1,359,952 - -0.2
1,360,093 + AO353_06095 0.26 +0.1
1,360,093 + AO353_06095 0.26 +0.6
1,360,093 + AO353_06095 0.26 -0.0
1,360,093 + AO353_06095 0.26 -1.7
1,360,094 - AO353_06095 0.26 +0.6
1,360,094 - AO353_06095 0.26 +0.7
1,360,094 - AO353_06095 0.26 -0.3
1,360,094 - AO353_06095 0.26 +0.6
1,360,094 - AO353_06095 0.26 +0.9
1,360,094 - AO353_06095 0.26 -1.3
1,360,094 - AO353_06095 0.26 -1.9
1,360,094 - AO353_06095 0.26 -0.1
1,360,096 + AO353_06095 0.27 +0.1
1,360,096 + AO353_06095 0.27 -0.4
1,360,096 + AO353_06095 0.27 -0.1
1,360,096 + AO353_06095 0.27 +0.2
1,360,096 + AO353_06095 0.27 -0.5
1,360,096 + AO353_06095 0.27 -0.5
1,360,096 + AO353_06095 0.27 +0.6
1,360,096 + AO353_06095 0.27 -1.8
1,360,097 - AO353_06095 0.27 -0.9
1,360,097 - AO353_06095 0.27 -1.6
1,360,097 - AO353_06095 0.27 -0.4
1,360,097 - AO353_06095 0.27 -0.2
1,360,097 - AO353_06095 0.27 -0.7
1,360,097 - AO353_06095 0.27 -0.4
1,360,097 - AO353_06095 0.27 +1.6
1,360,097 - AO353_06095 0.27 +0.1
1,360,097 - AO353_06095 0.27 -0.2
1,360,097 - AO353_06095 0.27 +0.7
1,360,097 - AO353_06095 0.27 -1.9
1,360,097 - AO353_06095 0.27 +0.2
1,360,120 + AO353_06095 0.30 +0.8
1,360,120 + AO353_06095 0.30 -0.5
1,360,120 + AO353_06095 0.30 +0.6
1,360,120 + AO353_06095 0.30 +0.8
1,360,120 + AO353_06095 0.30 -1.0
1,360,120 + AO353_06095 0.30 -0.3
1,360,121 - AO353_06095 0.31 +0.8
1,360,121 - AO353_06095 0.31 -0.2
1,360,121 - AO353_06095 0.31 +1.6
1,360,121 - AO353_06095 0.31 -0.0
1,360,121 - AO353_06095 0.31 +0.3
1,360,121 - AO353_06095 0.31 -2.3
1,360,167 + AO353_06095 0.38 -0.9
1,360,168 - AO353_06095 0.38 -0.2
1,360,168 - AO353_06095 0.38 +0.4
1,360,168 - AO353_06095 0.38 -0.4
1,360,176 + AO353_06095 0.39 -0.7
1,360,176 + AO353_06095 0.39 +0.2
1,360,214 - AO353_06095 0.45 -0.3
1,360,309 + AO353_06095 0.59 -1.6
1,360,309 + AO353_06095 0.59 +0.1
1,360,394 + AO353_06095 0.73 +0.1
1,360,394 + AO353_06095 0.73 -0.3
1,360,394 + AO353_06095 0.73 -0.0
1,360,395 - AO353_06095 0.73 -0.5
1,360,395 - AO353_06095 0.73 +0.2
1,360,395 - AO353_06095 0.73 -0.1
1,360,442 - AO353_06095 0.80 -1.2
1,360,442 - AO353_06095 0.80 -0.3
1,360,483 - AO353_06095 0.86 +0.0
1,360,522 - +0.8
1,360,522 - -1.6
1,360,522 - -0.9
1,360,534 - -0.4
1,360,542 + -0.5
1,360,543 - -0.2
1,360,543 - +0.7
1,360,570 + +0.3
1,360,570 + +0.6
1,360,570 + -0.1
1,360,570 + -0.2
1,360,570 + -0.7
1,360,571 - -0.2
1,360,571 - +0.4
1,360,571 - -1.0
1,360,571 - +0.5
1,360,571 - -0.1
1,360,571 - +0.4
1,360,571 - -0.2
1,360,571 - +0.9
1,360,592 + +0.6
1,360,592 + +0.6
1,360,592 + +1.6
1,360,592 + -0.4
1,360,906 - AO353_06100 0.55 -0.4
1,360,922 + AO353_06100 0.58 -0.0
1,360,922 + AO353_06100 0.58 -0.8
1,360,923 - AO353_06100 0.58 -1.1
1,361,109 - +0.1
1,361,109 - -0.0
1,361,240 + +0.3
1,361,240 + -1.2
1,361,241 - -0.0
1,361,241 - +1.0
1,361,425 + -0.7
1,361,425 + +0.1
1,361,425 + +0.1
1,361,425 + -0.1
1,361,426 - -0.0
1,361,426 - -1.9
1,361,427 + -0.7
1,361,427 + -0.2
1,361,427 + +0.3
1,361,427 + +1.7
1,361,427 + +0.3
1,361,427 + +0.1
1,361,427 + +0.6
1,361,427 + +0.0
1,361,427 + +0.4
1,361,428 - +0.6
1,361,428 - -0.7
1,361,428 - -0.4
1,361,428 - -0.4
1,361,428 - -1.0
1,361,437 - -0.9
1,361,437 - -0.2
1,361,437 - -0.0
1,361,437 - -0.6
1,361,437 - +0.4
1,361,450 - +0.0
1,361,450 - -0.0
1,361,450 - +0.6
1,361,458 + -0.0
1,361,458 + +0.3
1,361,459 - -1.6
1,361,487 + -0.3
1,361,487 + +0.2
1,361,487 + -0.1
1,361,487 + -0.2
1,361,487 + +0.8
1,361,488 - +1.4
1,361,488 - +0.3
1,361,488 - +0.7
1,361,545 + +0.8
1,361,621 + -0.3
1,361,621 + -0.3
1,361,621 + -1.2
1,361,621 + -0.8
1,361,621 + +0.6
1,361,622 - -0.5
1,361,622 - -0.7
1,361,625 + +0.8
1,361,626 - -0.1
1,361,626 - +1.0
1,361,626 - +0.1
1,361,644 + +1.0
1,361,644 + +0.2
1,361,644 + +0.4
1,361,644 + +0.5
1,361,645 - +0.3
1,361,645 - +0.8
1,361,702 + -1.4
1,361,703 - -0.9
1,361,703 - +1.2
1,361,726 + +0.8
1,361,763 + -0.1
1,361,763 + -1.6
1,361,763 + -0.6
1,361,764 - +2.6
1,361,764 - -2.6
1,361,764 - -0.6
1,361,764 - -1.4
1,361,785 + -0.3
1,361,785 + -0.5
1,361,786 - +0.1
1,361,790 + +0.3
1,361,791 - +1.0
1,361,887 + AO353_06105 0.16 -0.9
1,361,928 + AO353_06105 0.22 -1.2
1,362,162 + AO353_06105 0.56 +0.1
1,362,162 + AO353_06105 0.56 -0.5
1,362,162 + AO353_06105 0.56 +0.6
1,362,162 + AO353_06105 0.56 -0.7
1,362,163 - AO353_06105 0.56 -1.2
1,362,163 - AO353_06105 0.56 +0.4

Or see this region's nucleotide sequence