Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04970

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_04960 and AO353_04965 are separated by 2 nucleotidesAO353_04965 and AO353_04970 are separated by 68 nucleotidesAO353_04970 and AO353_04975 are separated by 734 nucleotides AO353_04960: AO353_04960 - GTP cyclohydrolase, at 1,094,255 to 1,094,815 _04960 AO353_04965: AO353_04965 - D-erythro-7,8-dihydroneopterin triphosphate epimerase, at 1,094,818 to 1,095,189 _04965 AO353_04970: AO353_04970 - cell division protein DedD, at 1,095,258 to 1,095,554 _04970 AO353_04975: AO353_04975 - AraC family transcriptional regulator, at 1,096,289 to 1,097,152 _04975 Position (kb) 1095 1096Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1094.262 kb on + strandat 1094.280 kb on - strandat 1094.293 kb on - strandat 1094.295 kb on + strandat 1094.295 kb on + strandat 1094.295 kb on + strandat 1094.295 kb on + strandat 1094.295 kb on + strandat 1094.296 kb on - strandat 1094.296 kb on - strandat 1094.296 kb on - strandat 1094.296 kb on - strandat 1094.296 kb on - strandat 1094.296 kb on - strandat 1094.366 kb on + strand, within AO353_04960at 1094.366 kb on + strand, within AO353_04960at 1094.366 kb on + strand, within AO353_04960at 1094.366 kb on + strand, within AO353_04960at 1094.367 kb on - strand, within AO353_04960at 1094.367 kb on - strand, within AO353_04960at 1094.367 kb on - strand, within AO353_04960at 1094.382 kb on - strand, within AO353_04960at 1094.382 kb on - strand, within AO353_04960at 1094.382 kb on - strand, within AO353_04960at 1094.468 kb on + strand, within AO353_04960at 1094.469 kb on - strand, within AO353_04960at 1094.522 kb on + strand, within AO353_04960at 1094.522 kb on + strand, within AO353_04960at 1094.522 kb on + strand, within AO353_04960at 1094.522 kb on + strand, within AO353_04960at 1094.522 kb on + strand, within AO353_04960at 1094.522 kb on + strand, within AO353_04960at 1094.522 kb on + strand, within AO353_04960at 1094.522 kb on + strand, within AO353_04960at 1094.522 kb on + strand, within AO353_04960at 1094.522 kb on + strand, within AO353_04960at 1094.523 kb on - strand, within AO353_04960at 1094.523 kb on - strand, within AO353_04960at 1094.523 kb on - strand, within AO353_04960at 1094.523 kb on - strand, within AO353_04960at 1094.523 kb on - strand, within AO353_04960at 1094.523 kb on - strand, within AO353_04960at 1094.523 kb on - strand, within AO353_04960at 1094.523 kb on - strand, within AO353_04960at 1094.523 kb on - strand, within AO353_04960at 1094.523 kb on - strand, within AO353_04960at 1094.523 kb on - strand, within AO353_04960at 1094.523 kb on - strand, within AO353_04960at 1094.523 kb on - strand, within AO353_04960at 1094.524 kb on + strand, within AO353_04960at 1094.524 kb on + strand, within AO353_04960at 1094.524 kb on + strand, within AO353_04960at 1094.524 kb on + strand, within AO353_04960at 1094.524 kb on + strand, within AO353_04960at 1094.524 kb on + strand, within AO353_04960at 1094.524 kb on + strand, within AO353_04960at 1094.524 kb on + strand, within AO353_04960at 1094.524 kb on + strand, within AO353_04960at 1094.524 kb on + strand, within AO353_04960at 1094.524 kb on + strand, within AO353_04960at 1094.524 kb on + strand, within AO353_04960at 1094.524 kb on + strand, within AO353_04960at 1094.524 kb on + strand, within AO353_04960at 1094.525 kb on - strand, within AO353_04960at 1094.525 kb on - strand, within AO353_04960at 1094.525 kb on - strand, within AO353_04960at 1094.525 kb on - strand, within AO353_04960at 1094.525 kb on - strand, within AO353_04960at 1094.525 kb on - strand, within AO353_04960at 1094.525 kb on - strand, within AO353_04960at 1094.525 kb on - strand, within AO353_04960at 1094.525 kb on - strand, within AO353_04960at 1094.525 kb on - strand, within AO353_04960at 1094.525 kb on - strand, within AO353_04960at 1094.525 kb on - strand, within AO353_04960at 1094.525 kb on - strand, within AO353_04960at 1094.525 kb on - strand, within AO353_04960at 1094.525 kb on - strand, within AO353_04960at 1094.813 kb on + strandat 1094.813 kb on + strandat 1094.813 kb on + strandat 1094.813 kb on + strandat 1094.813 kb on + strandat 1094.813 kb on + strandat 1094.813 kb on + strandat 1094.813 kb on + strandat 1094.813 kb on + strandat 1094.813 kb on + strandat 1094.813 kb on + strandat 1094.814 kb on - strandat 1094.814 kb on - strandat 1094.814 kb on - strandat 1094.814 kb on - strandat 1094.814 kb on - strandat 1094.814 kb on - strandat 1094.814 kb on - strandat 1094.944 kb on + strand, within AO353_04965at 1094.945 kb on - strand, within AO353_04965at 1094.996 kb on - strand, within AO353_04965at 1094.996 kb on - strand, within AO353_04965at 1094.996 kb on - strand, within AO353_04965at 1094.996 kb on - strand, within AO353_04965at 1095.007 kb on - strand, within AO353_04965at 1095.007 kb on - strand, within AO353_04965at 1095.074 kb on + strand, within AO353_04965at 1095.074 kb on + strand, within AO353_04965at 1095.075 kb on - strand, within AO353_04965at 1095.075 kb on - strand, within AO353_04965at 1095.109 kb on + strand, within AO353_04965at 1095.110 kb on - strand, within AO353_04965at 1095.204 kb on + strandat 1095.205 kb on - strandat 1095.205 kb on - strandat 1095.220 kb on + strandat 1095.220 kb on + strandat 1095.220 kb on + strandat 1095.221 kb on - strandat 1095.221 kb on - strandat 1095.221 kb on - strandat 1095.221 kb on - strandat 1095.242 kb on + strandat 1095.243 kb on - strandat 1095.396 kb on + strand, within AO353_04970at 1095.397 kb on - strand, within AO353_04970at 1095.397 kb on - strand, within AO353_04970at 1095.397 kb on - strand, within AO353_04970at 1095.459 kb on + strand, within AO353_04970at 1095.472 kb on - strand, within AO353_04970at 1095.472 kb on - strand, within AO353_04970at 1095.492 kb on + strand, within AO353_04970at 1095.552 kb on + strandat 1095.582 kb on - strandat 1095.582 kb on - strandat 1095.582 kb on - strandat 1095.587 kb on + strandat 1095.587 kb on + strandat 1095.587 kb on + strandat 1095.588 kb on - strandat 1095.588 kb on - strandat 1095.601 kb on + strandat 1095.602 kb on - strandat 1095.602 kb on - strandat 1095.602 kb on - strandat 1095.625 kb on + strandat 1095.625 kb on + strandat 1095.625 kb on + strandat 1095.626 kb on - strandat 1095.626 kb on - strandat 1095.626 kb on - strandat 1095.626 kb on - strandat 1095.626 kb on - strandat 1095.626 kb on - strandat 1095.645 kb on + strandat 1095.645 kb on + strandat 1095.646 kb on - strandat 1095.646 kb on - strandat 1095.735 kb on + strandat 1095.735 kb on + strandat 1095.735 kb on + strandat 1095.735 kb on + strandat 1095.791 kb on - strandat 1095.809 kb on + strandat 1095.810 kb on - strandat 1095.810 kb on - strandat 1095.834 kb on + strandat 1095.834 kb on + strandat 1095.835 kb on - strandat 1095.851 kb on - strandat 1095.979 kb on + strandat 1095.979 kb on + strandat 1095.980 kb on - strandat 1095.980 kb on - strandat 1095.980 kb on - strandat 1095.980 kb on - strandat 1095.982 kb on + strandat 1095.982 kb on + strandat 1095.982 kb on + strandat 1095.982 kb on + strandat 1095.982 kb on + strandat 1095.982 kb on + strandat 1095.982 kb on + strandat 1095.982 kb on + strandat 1095.982 kb on + strandat 1095.982 kb on + strandat 1095.982 kb on + strandat 1095.983 kb on - strandat 1095.983 kb on - strandat 1096.009 kb on + strandat 1096.009 kb on + strandat 1096.009 kb on + strandat 1096.009 kb on + strandat 1096.009 kb on + strandat 1096.010 kb on - strandat 1096.010 kb on - strandat 1096.010 kb on - strandat 1096.010 kb on - strandat 1096.010 kb on - strandat 1096.010 kb on - strandat 1096.224 kb on + strandat 1096.224 kb on + strandat 1096.224 kb on + strandat 1096.224 kb on + strandat 1096.224 kb on + strandat 1096.224 kb on + strandat 1096.225 kb on - strandat 1096.225 kb on - strandat 1096.225 kb on - strandat 1096.225 kb on - strandat 1096.225 kb on - strandat 1096.225 kb on - strandat 1096.226 kb on + strandat 1096.226 kb on + strandat 1096.227 kb on - strandat 1096.235 kb on + strandat 1096.236 kb on - strandat 1096.236 kb on - strandat 1096.236 kb on - strandat 1096.236 kb on - strandat 1096.237 kb on + strandat 1096.261 kb on + strandat 1096.388 kb on + strand, within AO353_04975at 1096.388 kb on + strand, within AO353_04975at 1096.389 kb on - strand, within AO353_04975at 1096.408 kb on + strand, within AO353_04975at 1096.409 kb on - strand, within AO353_04975at 1096.412 kb on + strand, within AO353_04975at 1096.412 kb on + strand, within AO353_04975at 1096.412 kb on + strand, within AO353_04975at 1096.412 kb on + strand, within AO353_04975at 1096.412 kb on + strand, within AO353_04975at 1096.412 kb on + strand, within AO353_04975at 1096.413 kb on - strand, within AO353_04975at 1096.413 kb on - strand, within AO353_04975at 1096.413 kb on - strand, within AO353_04975at 1096.454 kb on + strand, within AO353_04975at 1096.454 kb on + strand, within AO353_04975at 1096.455 kb on - strand, within AO353_04975at 1096.455 kb on - strand, within AO353_04975at 1096.494 kb on + strand, within AO353_04975at 1096.495 kb on - strand, within AO353_04975at 1096.495 kb on - strand, within AO353_04975at 1096.497 kb on + strand, within AO353_04975at 1096.497 kb on + strand, within AO353_04975at 1096.497 kb on + strand, within AO353_04975at 1096.498 kb on - strand, within AO353_04975at 1096.498 kb on - strand, within AO353_04975

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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1,094,262 + -1.5
1,094,280 - +0.1
1,094,293 - -0.6
1,094,295 + +0.1
1,094,295 + +0.2
1,094,295 + -0.7
1,094,295 + +2.1
1,094,295 + -1.3
1,094,296 - -2.1
1,094,296 - +0.1
1,094,296 - -0.1
1,094,296 - +1.1
1,094,296 - -0.4
1,094,296 - +0.3
1,094,366 + AO353_04960 0.20 -1.0
1,094,366 + AO353_04960 0.20 -0.1
1,094,366 + AO353_04960 0.20 +0.3
1,094,366 + AO353_04960 0.20 +0.5
1,094,367 - AO353_04960 0.20 +0.0
1,094,367 - AO353_04960 0.20 +0.5
1,094,367 - AO353_04960 0.20 +1.1
1,094,382 - AO353_04960 0.23 +1.5
1,094,382 - AO353_04960 0.23 +0.1
1,094,382 - AO353_04960 0.23 -0.7
1,094,468 + AO353_04960 0.38 +0.2
1,094,469 - AO353_04960 0.38 +0.5
1,094,522 + AO353_04960 0.48 -2.0
1,094,522 + AO353_04960 0.48 +2.0
1,094,522 + AO353_04960 0.48 -1.5
1,094,522 + AO353_04960 0.48 +0.9
1,094,522 + AO353_04960 0.48 +0.5
1,094,522 + AO353_04960 0.48 -0.1
1,094,522 + AO353_04960 0.48 -1.1
1,094,522 + AO353_04960 0.48 -0.1
1,094,522 + AO353_04960 0.48 +1.5
1,094,522 + AO353_04960 0.48 +0.2
1,094,523 - AO353_04960 0.48 +1.5
1,094,523 - AO353_04960 0.48 +0.4
1,094,523 - AO353_04960 0.48 +0.0
1,094,523 - AO353_04960 0.48 -0.6
1,094,523 - AO353_04960 0.48 -0.1
1,094,523 - AO353_04960 0.48 +0.3
1,094,523 - AO353_04960 0.48 -1.8
1,094,523 - AO353_04960 0.48 -1.9
1,094,523 - AO353_04960 0.48 -0.1
1,094,523 - AO353_04960 0.48 -1.0
1,094,523 - AO353_04960 0.48 +0.1
1,094,523 - AO353_04960 0.48 -1.0
1,094,523 - AO353_04960 0.48 -1.1
1,094,524 + AO353_04960 0.48 -0.8
1,094,524 + AO353_04960 0.48 +0.5
1,094,524 + AO353_04960 0.48 +0.5
1,094,524 + AO353_04960 0.48 +0.2
1,094,524 + AO353_04960 0.48 -0.1
1,094,524 + AO353_04960 0.48 +0.5
1,094,524 + AO353_04960 0.48 -0.3
1,094,524 + AO353_04960 0.48 +0.1
1,094,524 + AO353_04960 0.48 +0.0
1,094,524 + AO353_04960 0.48 -1.7
1,094,524 + AO353_04960 0.48 -0.3
1,094,524 + AO353_04960 0.48 +1.7
1,094,524 + AO353_04960 0.48 +0.7
1,094,524 + AO353_04960 0.48 +0.6
1,094,525 - AO353_04960 0.48 -1.1
1,094,525 - AO353_04960 0.48 -0.1
1,094,525 - AO353_04960 0.48 -0.1
1,094,525 - AO353_04960 0.48 -0.2
1,094,525 - AO353_04960 0.48 -0.7
1,094,525 - AO353_04960 0.48 +0.7
1,094,525 - AO353_04960 0.48 +0.6
1,094,525 - AO353_04960 0.48 +0.9
1,094,525 - AO353_04960 0.48 +0.8
1,094,525 - AO353_04960 0.48 +1.0
1,094,525 - AO353_04960 0.48 +0.7
1,094,525 - AO353_04960 0.48 +0.8
1,094,525 - AO353_04960 0.48 -0.6
1,094,525 - AO353_04960 0.48 -1.7
1,094,525 - AO353_04960 0.48 +0.8
1,094,813 + -1.2
1,094,813 + +1.1
1,094,813 + +0.0
1,094,813 + +0.7
1,094,813 + -2.8
1,094,813 + +1.1
1,094,813 + +0.9
1,094,813 + +0.3
1,094,813 + -0.6
1,094,813 + -0.8
1,094,813 + +0.5
1,094,814 - +1.6
1,094,814 - -0.7
1,094,814 - +0.8
1,094,814 - +1.8
1,094,814 - -0.1
1,094,814 - +0.9
1,094,814 - -0.3
1,094,944 + AO353_04965 0.34 -1.6
1,094,945 - AO353_04965 0.34 +0.5
1,094,996 - AO353_04965 0.48 +1.9
1,094,996 - AO353_04965 0.48 -0.2
1,094,996 - AO353_04965 0.48 -1.1
1,094,996 - AO353_04965 0.48 -1.2
1,095,007 - AO353_04965 0.51 +0.2
1,095,007 - AO353_04965 0.51 -1.0
1,095,074 + AO353_04965 0.69 +1.2
1,095,074 + AO353_04965 0.69 -0.4
1,095,075 - AO353_04965 0.69 -0.3
1,095,075 - AO353_04965 0.69 -1.4
1,095,109 + AO353_04965 0.78 -0.9
1,095,110 - AO353_04965 0.78 +1.5
1,095,204 + -0.0
1,095,205 - +1.5
1,095,205 - -1.0
1,095,220 + -1.9
1,095,220 + -0.7
1,095,220 + +0.7
1,095,221 - -0.5
1,095,221 - -0.2
1,095,221 - -0.6
1,095,221 - -1.5
1,095,242 + -0.8
1,095,243 - -1.7
1,095,396 + AO353_04970 0.46 -0.8
1,095,397 - AO353_04970 0.47 -1.1
1,095,397 - AO353_04970 0.47 -1.5
1,095,397 - AO353_04970 0.47 -0.6
1,095,459 + AO353_04970 0.68 +0.1
1,095,472 - AO353_04970 0.72 +0.1
1,095,472 - AO353_04970 0.72 -0.3
1,095,492 + AO353_04970 0.79 -1.9
1,095,552 + -0.1
1,095,582 - +0.5
1,095,582 - -0.8
1,095,582 - -0.5
1,095,587 + -0.2
1,095,587 + -1.1
1,095,587 + -0.3
1,095,588 - -1.7
1,095,588 - -0.2
1,095,601 + +1.9
1,095,602 - +0.1
1,095,602 - +0.1
1,095,602 - -0.9
1,095,625 + -1.9
1,095,625 + +0.5
1,095,625 + +0.5
1,095,626 - -0.7
1,095,626 - -0.6
1,095,626 - -0.3
1,095,626 - +0.5
1,095,626 - -0.1
1,095,626 - +0.5
1,095,645 + -0.5
1,095,645 + -0.7
1,095,646 - +0.6
1,095,646 - -0.6
1,095,735 + -1.9
1,095,735 + +1.5
1,095,735 + -1.1
1,095,735 + -0.3
1,095,791 - +0.1
1,095,809 + +0.2
1,095,810 - +0.7
1,095,810 - +2.2
1,095,834 + -0.9
1,095,834 + +0.9
1,095,835 - -2.1
1,095,851 - -0.5
1,095,979 + -0.2
1,095,979 + +1.0
1,095,980 - +0.2
1,095,980 - +1.1
1,095,980 - +0.1
1,095,980 - -1.3
1,095,982 + +0.4
1,095,982 + -0.6
1,095,982 + +0.9
1,095,982 + +1.0
1,095,982 + +0.5
1,095,982 + +1.7
1,095,982 + -0.0
1,095,982 + +0.1
1,095,982 + -1.3
1,095,982 + -1.2
1,095,982 + -0.3
1,095,983 - -1.2
1,095,983 - +0.1
1,096,009 + -0.3
1,096,009 + +0.7
1,096,009 + -0.4
1,096,009 + +0.2
1,096,009 + -0.4
1,096,010 - +0.1
1,096,010 - -0.6
1,096,010 - +0.4
1,096,010 - -0.6
1,096,010 - +0.6
1,096,010 - -0.3
1,096,224 + -0.5
1,096,224 + +0.9
1,096,224 + -0.5
1,096,224 + -0.5
1,096,224 + +0.6
1,096,224 + -0.4
1,096,225 - +1.5
1,096,225 - +1.0
1,096,225 - +0.5
1,096,225 - +0.2
1,096,225 - +0.9
1,096,225 - -1.2
1,096,226 + +0.0
1,096,226 + +0.9
1,096,227 - -0.1
1,096,235 + +0.9
1,096,236 - +0.8
1,096,236 - -0.4
1,096,236 - +0.6
1,096,236 - -0.4
1,096,237 + +0.3
1,096,261 + +0.7
1,096,388 + AO353_04975 0.11 +0.2
1,096,388 + AO353_04975 0.11 +0.6
1,096,389 - AO353_04975 0.12 +1.1
1,096,408 + AO353_04975 0.14 +0.5
1,096,409 - AO353_04975 0.14 +1.2
1,096,412 + AO353_04975 0.14 -0.5
1,096,412 + AO353_04975 0.14 +2.0
1,096,412 + AO353_04975 0.14 -0.5
1,096,412 + AO353_04975 0.14 +0.9
1,096,412 + AO353_04975 0.14 -0.8
1,096,412 + AO353_04975 0.14 -0.1
1,096,413 - AO353_04975 0.14 -1.7
1,096,413 - AO353_04975 0.14 +0.7
1,096,413 - AO353_04975 0.14 +0.0
1,096,454 + AO353_04975 0.19 +0.7
1,096,454 + AO353_04975 0.19 -0.1
1,096,455 - AO353_04975 0.19 -0.8
1,096,455 - AO353_04975 0.19 +1.2
1,096,494 + AO353_04975 0.24 +0.4
1,096,495 - AO353_04975 0.24 -1.5
1,096,495 - AO353_04975 0.24 -0.8
1,096,497 + AO353_04975 0.24 +1.8
1,096,497 + AO353_04975 0.24 -0.4
1,096,497 + AO353_04975 0.24 +0.0
1,096,498 - AO353_04975 0.24 -0.1
1,096,498 - AO353_04975 0.24 -0.0

Or see this region's nucleotide sequence