Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02320 and AO353_02325 overlap by 4 nucleotides AO353_02325 and AO353_02330 are separated by 89 nucleotides AO353_02330 and AO353_02335 are separated by 121 nucleotides AO353_02335 and AO353_02340 are separated by 51 nucleotides
AO353_02320: AO353_02320 - allantoinase, at 493,453 to 494,379
_02320
AO353_02325: AO353_02325 - OHCU decarboxylase, at 494,376 to 494,891
_02325
AO353_02330: AO353_02330 - allantoicase, at 494,981 to 495,976
_02330
AO353_02335: AO353_02335 - ureidoglycolate hydrolase, at 496,098 to 496,601
_02335
AO353_02340: AO353_02340 - hypothetical protein, at 496,653 to 497,960
_02340
Position (kb) 494
495
496 Strain fitness (log2 ratio) -2
-1
0
1
2 at 494.003 kb on - strand, within AO353_02320 at 494.003 kb on - strand, within AO353_02320 at 494.017 kb on + strand, within AO353_02320 at 494.017 kb on + strand, within AO353_02320 at 494.018 kb on - strand, within AO353_02320 at 494.018 kb on - strand, within AO353_02320 at 494.018 kb on - strand, within AO353_02320 at 494.018 kb on - strand, within AO353_02320 at 494.018 kb on - strand, within AO353_02320 at 494.018 kb on - strand, within AO353_02320 at 494.018 kb on - strand, within AO353_02320 at 494.019 kb on - strand, within AO353_02320 at 494.083 kb on + strand, within AO353_02320 at 494.084 kb on - strand, within AO353_02320 at 494.150 kb on - strand, within AO353_02320 at 494.155 kb on + strand, within AO353_02320 at 494.155 kb on + strand, within AO353_02320 at 494.156 kb on - strand, within AO353_02320 at 494.182 kb on + strand, within AO353_02320 at 494.448 kb on + strand, within AO353_02325 at 494.448 kb on + strand, within AO353_02325 at 494.448 kb on + strand, within AO353_02325 at 494.448 kb on + strand, within AO353_02325 at 494.448 kb on + strand, within AO353_02325 at 494.448 kb on + strand, within AO353_02325 at 494.448 kb on + strand, within AO353_02325 at 494.449 kb on - strand, within AO353_02325 at 494.449 kb on - strand, within AO353_02325 at 494.449 kb on - strand, within AO353_02325 at 494.449 kb on - strand, within AO353_02325 at 494.449 kb on - strand, within AO353_02325 at 494.449 kb on - strand, within AO353_02325 at 494.449 kb on - strand, within AO353_02325 at 494.669 kb on + strand, within AO353_02325 at 494.724 kb on + strand, within AO353_02325 at 494.762 kb on - strand, within AO353_02325 at 494.878 kb on + strand at 494.959 kb on + strand at 494.959 kb on + strand at 494.960 kb on - strand at 494.960 kb on - strand at 494.963 kb on + strand at 494.963 kb on + strand at 494.964 kb on - strand at 494.990 kb on + strand at 494.990 kb on + strand at 494.991 kb on - strand at 494.991 kb on - strand at 494.997 kb on + strand at 494.997 kb on + strand at 494.998 kb on - strand at 495.189 kb on - strand, within AO353_02330 at 495.270 kb on - strand, within AO353_02330 at 495.435 kb on - strand, within AO353_02330 at 495.467 kb on + strand, within AO353_02330 at 495.468 kb on - strand, within AO353_02330 at 495.616 kb on + strand, within AO353_02330 at 495.617 kb on - strand, within AO353_02330 at 495.955 kb on - strand at 495.955 kb on - strand at 495.974 kb on + strand at 495.974 kb on + strand at 495.975 kb on - strand at 495.975 kb on - strand at 495.975 kb on - strand at 495.975 kb on - strand at 495.975 kb on - strand at 495.975 kb on - strand at 495.975 kb on - strand at 495.988 kb on + strand at 495.988 kb on + strand at 495.988 kb on + strand at 495.988 kb on + strand at 495.988 kb on + strand at 495.988 kb on + strand at 495.988 kb on + strand at 495.989 kb on - strand at 495.989 kb on - strand at 495.989 kb on - strand at 495.989 kb on - strand at 495.989 kb on - strand at 495.989 kb on - strand at 495.989 kb on - strand at 496.019 kb on + strand at 496.050 kb on + strand at 496.050 kb on + strand at 496.050 kb on + strand at 496.050 kb on + strand at 496.050 kb on + strand at 496.050 kb on + strand at 496.051 kb on - strand at 496.051 kb on - strand at 496.083 kb on + strand at 496.083 kb on + strand at 496.083 kb on + strand at 496.083 kb on + strand at 496.083 kb on + strand at 496.083 kb on + strand at 496.083 kb on + strand at 496.083 kb on + strand at 496.083 kb on + strand at 496.083 kb on + strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.405 kb on + strand, within AO353_02335 at 496.406 kb on - strand, within AO353_02335 at 496.451 kb on + strand, within AO353_02335 at 496.451 kb on + strand, within AO353_02335 at 496.451 kb on + strand, within AO353_02335 at 496.451 kb on + strand, within AO353_02335 at 496.451 kb on + strand, within AO353_02335 at 496.452 kb on - strand, within AO353_02335 at 496.452 kb on - strand, within AO353_02335 at 496.452 kb on - strand, within AO353_02335 at 496.452 kb on - strand, within AO353_02335 at 496.455 kb on + strand, within AO353_02335 at 496.455 kb on + strand, within AO353_02335 at 496.455 kb on + strand, within AO353_02335 at 496.455 kb on + strand, within AO353_02335 at 496.456 kb on - strand, within AO353_02335 at 496.541 kb on + strand, within AO353_02335 at 496.541 kb on + strand, within AO353_02335 at 496.542 kb on - strand, within AO353_02335 at 496.542 kb on - strand, within AO353_02335 at 496.542 kb on - strand, within AO353_02335 at 496.542 kb on - strand, within AO353_02335 at 496.542 kb on - strand, within AO353_02335 at 496.542 kb on - strand, within AO353_02335 at 496.599 kb on + strand at 496.599 kb on + strand at 496.599 kb on + strand at 496.599 kb on + strand at 496.600 kb on - strand at 496.600 kb on - strand at 496.600 kb on - strand at 496.645 kb on + strand at 496.646 kb on - strand at 496.740 kb on + strand at 496.740 kb on + strand at 496.740 kb on + strand at 496.740 kb on + strand at 496.741 kb on - strand at 496.741 kb on - strand at 496.741 kb on - strand at 496.741 kb on - strand at 496.741 kb on - strand at 496.830 kb on + strand, within AO353_02340 at 496.830 kb on + strand, within AO353_02340 at 496.831 kb on - strand, within AO353_02340 at 496.831 kb on - strand, within AO353_02340 at 496.831 kb on - strand, within AO353_02340 at 496.831 kb on - strand, within AO353_02340 at 496.831 kb on - strand, within AO353_02340 at 496.845 kb on + strand, within AO353_02340 at 496.846 kb on - strand, within AO353_02340 at 496.846 kb on - strand, within AO353_02340 at 496.902 kb on + strand, within AO353_02340 at 496.902 kb on + strand, within AO353_02340 at 496.902 kb on + strand, within AO353_02340 at 496.902 kb on + strand, within AO353_02340 at 496.903 kb on - strand, within AO353_02340 at 496.903 kb on - strand, within AO353_02340 at 496.903 kb on - strand, within AO353_02340 at 496.903 kb on - strand, within AO353_02340 at 496.903 kb on - strand, within AO353_02340 at 496.903 kb on - strand, within AO353_02340 at 496.947 kb on + strand, within AO353_02340 at 496.947 kb on + strand, within AO353_02340 at 496.948 kb on - strand, within AO353_02340 at 496.965 kb on + strand, within AO353_02340 at 496.965 kb on + strand, within AO353_02340 at 496.965 kb on + strand, within AO353_02340 at 496.965 kb on + strand, within AO353_02340 at 496.966 kb on - strand, within AO353_02340
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 494,003 - AO353_02320 0.59 +0.4 494,003 - AO353_02320 0.59 -1.6 494,017 + AO353_02320 0.61 -1.3 494,017 + AO353_02320 0.61 -2.7 494,018 - AO353_02320 0.61 -0.2 494,018 - AO353_02320 0.61 +0.5 494,018 - AO353_02320 0.61 -1.9 494,018 - AO353_02320 0.61 +0.0 494,018 - AO353_02320 0.61 +1.2 494,018 - AO353_02320 0.61 -0.8 494,018 - AO353_02320 0.61 -0.7 494,019 - AO353_02320 0.61 +0.2 494,083 + AO353_02320 0.68 +0.2 494,084 - AO353_02320 0.68 +1.6 494,150 - AO353_02320 0.75 -0.0 494,155 + AO353_02320 0.76 -0.8 494,155 + AO353_02320 0.76 +0.2 494,156 - AO353_02320 0.76 -0.1 494,182 + AO353_02320 0.79 +0.5 494,448 + AO353_02325 0.14 -0.9 494,448 + AO353_02325 0.14 +0.9 494,448 + AO353_02325 0.14 -1.0 494,448 + AO353_02325 0.14 -0.1 494,448 + AO353_02325 0.14 +0.7 494,448 + AO353_02325 0.14 +0.5 494,448 + AO353_02325 0.14 -2.0 494,449 - AO353_02325 0.14 +0.2 494,449 - AO353_02325 0.14 +0.1 494,449 - AO353_02325 0.14 +1.2 494,449 - AO353_02325 0.14 -0.9 494,449 - AO353_02325 0.14 -1.3 494,449 - AO353_02325 0.14 -2.3 494,449 - AO353_02325 0.14 -1.3 494,669 + AO353_02325 0.57 -0.6 494,724 + AO353_02325 0.67 +0.9 494,762 - AO353_02325 0.75 -0.8 494,878 + +2.2 494,959 + -0.3 494,959 + +0.2 494,960 - -0.2 494,960 - -1.2 494,963 + -0.9 494,963 + -0.1 494,964 - +0.2 494,990 + -0.2 494,990 + +0.2 494,991 - -0.1 494,991 - +0.5 494,997 + -1.0 494,997 + +1.2 494,998 - +0.2 495,189 - AO353_02330 0.21 -0.9 495,270 - AO353_02330 0.29 -0.6 495,435 - AO353_02330 0.46 -1.2 495,467 + AO353_02330 0.49 -0.5 495,468 - AO353_02330 0.49 -0.2 495,616 + AO353_02330 0.64 -0.3 495,617 - AO353_02330 0.64 -0.9 495,955 - -0.9 495,955 - -0.3 495,974 + -0.6 495,974 + -0.8 495,975 - -0.3 495,975 - +0.5 495,975 - +1.7 495,975 - +0.5 495,975 - +0.6 495,975 - -1.1 495,975 - +0.1 495,988 + +0.2 495,988 + -0.7 495,988 + +1.7 495,988 + -0.8 495,988 + -1.6 495,988 + +2.4 495,988 + +1.0 495,989 - -2.5 495,989 - +0.2 495,989 - +0.2 495,989 - -2.0 495,989 - +0.5 495,989 - +1.4 495,989 - +1.6 496,019 + +0.5 496,050 + +1.4 496,050 + +0.1 496,050 + -0.2 496,050 + -0.2 496,050 + -1.3 496,050 + +1.7 496,051 - -0.2 496,051 - +0.0 496,083 + -0.6 496,083 + -0.8 496,083 + +0.4 496,083 + -0.0 496,083 + -1.5 496,083 + -0.9 496,083 + -0.3 496,083 + +0.2 496,083 + +0.1 496,083 + -0.5 496,084 - +0.6 496,084 - +1.1 496,084 - -0.5 496,084 - -0.4 496,084 - -0.9 496,084 - -0.9 496,084 - -0.3 496,084 - +0.1 496,084 - -1.2 496,084 - -0.6 496,084 - -0.8 496,084 - +0.1 496,084 - -1.8 496,405 + AO353_02335 0.61 +0.2 496,406 - AO353_02335 0.61 +0.2 496,451 + AO353_02335 0.70 +0.5 496,451 + AO353_02335 0.70 -0.7 496,451 + AO353_02335 0.70 -0.9 496,451 + AO353_02335 0.70 +0.4 496,451 + AO353_02335 0.70 +1.2 496,452 - AO353_02335 0.70 -0.2 496,452 - AO353_02335 0.70 +0.7 496,452 - AO353_02335 0.70 +0.2 496,452 - AO353_02335 0.70 +0.2 496,455 + AO353_02335 0.71 -1.8 496,455 + AO353_02335 0.71 +0.4 496,455 + AO353_02335 0.71 -0.6 496,455 + AO353_02335 0.71 -0.2 496,456 - AO353_02335 0.71 -0.0 496,541 + AO353_02335 0.88 +1.6 496,541 + AO353_02335 0.88 -0.9 496,542 - AO353_02335 0.88 +0.8 496,542 - AO353_02335 0.88 -0.1 496,542 - AO353_02335 0.88 +0.2 496,542 - AO353_02335 0.88 -0.9 496,542 - AO353_02335 0.88 +0.7 496,542 - AO353_02335 0.88 -1.1 496,599 + -0.3 496,599 + +0.0 496,599 + +0.6 496,599 + -0.3 496,600 - -0.1 496,600 - +0.7 496,600 - -1.1 496,645 + +0.2 496,646 - +1.7 496,740 + -0.3 496,740 + +0.2 496,740 + -1.1 496,740 + +0.5 496,741 - -0.8 496,741 - +1.1 496,741 - -0.3 496,741 - -0.5 496,741 - -0.3 496,830 + AO353_02340 0.14 -0.4 496,830 + AO353_02340 0.14 +1.2 496,831 - AO353_02340 0.14 -1.0 496,831 - AO353_02340 0.14 -0.6 496,831 - AO353_02340 0.14 -0.3 496,831 - AO353_02340 0.14 +0.4 496,831 - AO353_02340 0.14 +0.4 496,845 + AO353_02340 0.15 +2.1 496,846 - AO353_02340 0.15 +0.7 496,846 - AO353_02340 0.15 -0.5 496,902 + AO353_02340 0.19 -1.9 496,902 + AO353_02340 0.19 -0.2 496,902 + AO353_02340 0.19 -0.4 496,902 + AO353_02340 0.19 +0.1 496,903 - AO353_02340 0.19 +0.3 496,903 - AO353_02340 0.19 +0.5 496,903 - AO353_02340 0.19 +0.4 496,903 - AO353_02340 0.19 +0.8 496,903 - AO353_02340 0.19 +0.5 496,903 - AO353_02340 0.19 +0.9 496,947 + AO353_02340 0.22 +0.5 496,947 + AO353_02340 0.22 +0.2 496,948 - AO353_02340 0.23 -0.5 496,965 + AO353_02340 0.24 -0.4 496,965 + AO353_02340 0.24 -0.8 496,965 + AO353_02340 0.24 -0.0 496,965 + AO353_02340 0.24 +0.1 496,966 - AO353_02340 0.24 -0.2
Or see this region's nucleotide sequence