Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19890

Experiment: D-Galactose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS19885 and ABZR87_RS19890 overlap by 4 nucleotidesABZR87_RS19890 and ABZR87_RS19895 overlap by 37 nucleotides ABZR87_RS19885: ABZR87_RS19885 - efflux transporter outer membrane subunit, at 836,330 to 837,844 _RS19885 ABZR87_RS19890: ABZR87_RS19890 - efflux RND transporter periplasmic adaptor subunit, at 837,841 to 838,914 _RS19890 ABZR87_RS19895: ABZR87_RS19895 - ribosome-associated ATPase/putative transporter RbbA, at 838,878 to 841,694 _RS19895 Position (kb) 837 838 839Strain fitness (log2 ratio) -1 0 1at 836.900 kb on + strand, within ABZR87_RS19885at 836.900 kb on + strand, within ABZR87_RS19885at 836.900 kb on + strand, within ABZR87_RS19885at 836.901 kb on - strand, within ABZR87_RS19885at 836.901 kb on - strand, within ABZR87_RS19885at 836.953 kb on - strand, within ABZR87_RS19885at 836.953 kb on - strand, within ABZR87_RS19885at 837.075 kb on + strand, within ABZR87_RS19885at 837.075 kb on + strand, within ABZR87_RS19885at 837.075 kb on + strand, within ABZR87_RS19885at 837.076 kb on - strand, within ABZR87_RS19885at 837.324 kb on - strand, within ABZR87_RS19885at 837.492 kb on + strand, within ABZR87_RS19885at 837.492 kb on + strand, within ABZR87_RS19885at 837.492 kb on + strand, within ABZR87_RS19885at 837.492 kb on + strand, within ABZR87_RS19885at 837.492 kb on + strand, within ABZR87_RS19885at 837.493 kb on - strand, within ABZR87_RS19885at 837.493 kb on - strand, within ABZR87_RS19885at 837.493 kb on - strand, within ABZR87_RS19885at 837.493 kb on - strand, within ABZR87_RS19885at 837.493 kb on - strand, within ABZR87_RS19885at 837.493 kb on - strand, within ABZR87_RS19885at 837.493 kb on - strand, within ABZR87_RS19885at 837.493 kb on - strand, within ABZR87_RS19885at 837.493 kb on - strand, within ABZR87_RS19885at 837.493 kb on - strand, within ABZR87_RS19885at 837.734 kb on + strandat 837.735 kb on - strandat 837.735 kb on - strandat 837.735 kb on - strandat 838.388 kb on + strand, within ABZR87_RS19890at 838.388 kb on + strand, within ABZR87_RS19890at 838.389 kb on - strand, within ABZR87_RS19890at 838.401 kb on + strand, within ABZR87_RS19890at 838.401 kb on + strand, within ABZR87_RS19890at 838.402 kb on - strand, within ABZR87_RS19890at 838.452 kb on - strand, within ABZR87_RS19890at 838.452 kb on - strand, within ABZR87_RS19890at 838.591 kb on + strand, within ABZR87_RS19890at 838.591 kb on + strand, within ABZR87_RS19890at 838.591 kb on + strand, within ABZR87_RS19890at 838.592 kb on - strand, within ABZR87_RS19890at 838.592 kb on - strand, within ABZR87_RS19890at 838.678 kb on + strand, within ABZR87_RS19890at 838.678 kb on + strand, within ABZR87_RS19890at 838.678 kb on + strand, within ABZR87_RS19890at 838.678 kb on + strand, within ABZR87_RS19890at 838.678 kb on + strand, within ABZR87_RS19890at 838.679 kb on - strand, within ABZR87_RS19890at 838.679 kb on - strand, within ABZR87_RS19890at 838.679 kb on - strand, within ABZR87_RS19890at 838.679 kb on - strand, within ABZR87_RS19890at 838.679 kb on - strand, within ABZR87_RS19890at 838.679 kb on - strand, within ABZR87_RS19890at 839.202 kb on + strand, within ABZR87_RS19895at 839.202 kb on + strand, within ABZR87_RS19895at 839.203 kb on - strand, within ABZR87_RS19895at 839.203 kb on - strand, within ABZR87_RS19895at 839.203 kb on - strand, within ABZR87_RS19895at 839.232 kb on + strand, within ABZR87_RS19895at 839.232 kb on + strand, within ABZR87_RS19895at 839.233 kb on - strand, within ABZR87_RS19895at 839.508 kb on - strand, within ABZR87_RS19895at 839.508 kb on - strand, within ABZR87_RS19895at 839.553 kb on + strand, within ABZR87_RS19895at 839.554 kb on - strand, within ABZR87_RS19895

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
remove
836,900 + ABZR87_RS19885 0.38 -0.9
836,900 + ABZR87_RS19885 0.38 +0.1
836,900 + ABZR87_RS19885 0.38 -0.7
836,901 - ABZR87_RS19885 0.38 -0.6
836,901 - ABZR87_RS19885 0.38 +0.8
836,953 - ABZR87_RS19885 0.41 +0.3
836,953 - ABZR87_RS19885 0.41 +0.4
837,075 + ABZR87_RS19885 0.49 -0.1
837,075 + ABZR87_RS19885 0.49 +1.6
837,075 + ABZR87_RS19885 0.49 -0.2
837,076 - ABZR87_RS19885 0.49 -0.0
837,324 - ABZR87_RS19885 0.66 +0.0
837,492 + ABZR87_RS19885 0.77 -0.4
837,492 + ABZR87_RS19885 0.77 +0.1
837,492 + ABZR87_RS19885 0.77 +0.4
837,492 + ABZR87_RS19885 0.77 -0.4
837,492 + ABZR87_RS19885 0.77 -0.1
837,493 - ABZR87_RS19885 0.77 +0.2
837,493 - ABZR87_RS19885 0.77 -0.1
837,493 - ABZR87_RS19885 0.77 -0.1
837,493 - ABZR87_RS19885 0.77 +1.1
837,493 - ABZR87_RS19885 0.77 -0.3
837,493 - ABZR87_RS19885 0.77 -0.3
837,493 - ABZR87_RS19885 0.77 +0.8
837,493 - ABZR87_RS19885 0.77 +0.1
837,493 - ABZR87_RS19885 0.77 -0.5
837,493 - ABZR87_RS19885 0.77 -0.9
837,734 + +0.2
837,735 - +0.1
837,735 - -0.4
837,735 - +0.6
838,388 + ABZR87_RS19890 0.51 +0.0
838,388 + ABZR87_RS19890 0.51 +0.3
838,389 - ABZR87_RS19890 0.51 -0.0
838,401 + ABZR87_RS19890 0.52 +0.4
838,401 + ABZR87_RS19890 0.52 +0.7
838,402 - ABZR87_RS19890 0.52 +1.0
838,452 - ABZR87_RS19890 0.57 +0.0
838,452 - ABZR87_RS19890 0.57 -0.3
838,591 + ABZR87_RS19890 0.70 -0.3
838,591 + ABZR87_RS19890 0.70 -0.0
838,591 + ABZR87_RS19890 0.70 +0.3
838,592 - ABZR87_RS19890 0.70 +0.2
838,592 - ABZR87_RS19890 0.70 -0.0
838,678 + ABZR87_RS19890 0.78 +0.8
838,678 + ABZR87_RS19890 0.78 +0.6
838,678 + ABZR87_RS19890 0.78 -0.5
838,678 + ABZR87_RS19890 0.78 +0.6
838,678 + ABZR87_RS19890 0.78 +0.8
838,679 - ABZR87_RS19890 0.78 -0.5
838,679 - ABZR87_RS19890 0.78 +0.0
838,679 - ABZR87_RS19890 0.78 -0.3
838,679 - ABZR87_RS19890 0.78 +0.3
838,679 - ABZR87_RS19890 0.78 +0.9
838,679 - ABZR87_RS19890 0.78 +0.5
839,202 + ABZR87_RS19895 0.12 +0.3
839,202 + ABZR87_RS19895 0.12 +0.4
839,203 - ABZR87_RS19895 0.12 +0.7
839,203 - ABZR87_RS19895 0.12 +0.1
839,203 - ABZR87_RS19895 0.12 +0.2
839,232 + ABZR87_RS19895 0.13 +0.4
839,232 + ABZR87_RS19895 0.13 -0.3
839,233 - ABZR87_RS19895 0.13 -0.4
839,508 - ABZR87_RS19895 0.22 -0.7
839,508 - ABZR87_RS19895 0.22 -1.3
839,553 + ABZR87_RS19895 0.24 -0.1
839,554 - ABZR87_RS19895 0.24 -0.4

Or see this region's nucleotide sequence