Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16055

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16045 and ABZR87_RS16050 are separated by 15 nucleotidesABZR87_RS16050 and ABZR87_RS16055 are separated by 46 nucleotidesABZR87_RS16055 and ABZR87_RS16060 are separated by 120 nucleotides ABZR87_RS16045: ABZR87_RS16045 - LysR family transcriptional regulator, at 3,392,542 to 3,393,438 _RS16045 ABZR87_RS16050: ABZR87_RS16050 - hypothetical protein, at 3,393,454 to 3,393,879 _RS16050 ABZR87_RS16055: ABZR87_RS16055 - outer membrane lipoprotein chaperone LolA, at 3,393,926 to 3,394,573 _RS16055 ABZR87_RS16060: ABZR87_RS16060 - DNA translocase FtsK, at 3,394,694 to 3,397,039 _RS16060 Position (kb) 3393 3394 3395Strain fitness (log2 ratio) -2 -1 0 1 2at 3392.997 kb on + strand, within ABZR87_RS16045at 3392.997 kb on + strand, within ABZR87_RS16045at 3393.010 kb on + strand, within ABZR87_RS16045at 3393.011 kb on - strand, within ABZR87_RS16045at 3393.041 kb on - strand, within ABZR87_RS16045at 3393.073 kb on + strand, within ABZR87_RS16045at 3393.074 kb on - strand, within ABZR87_RS16045at 3393.268 kb on + strand, within ABZR87_RS16045at 3393.268 kb on + strand, within ABZR87_RS16045at 3393.269 kb on - strand, within ABZR87_RS16045at 3393.269 kb on - strand, within ABZR87_RS16045at 3393.269 kb on - strand, within ABZR87_RS16045at 3393.295 kb on + strand, within ABZR87_RS16045at 3393.295 kb on + strand, within ABZR87_RS16045at 3393.296 kb on - strand, within ABZR87_RS16045at 3393.296 kb on - strand, within ABZR87_RS16045at 3393.296 kb on - strand, within ABZR87_RS16045at 3393.344 kb on - strand, within ABZR87_RS16045at 3393.437 kb on - strandat 3393.896 kb on + strandat 3393.897 kb on - strandat 3393.897 kb on - strandat 3393.962 kb on - strandat 3393.962 kb on - strandat 3394.153 kb on + strand, within ABZR87_RS16055at 3394.153 kb on + strand, within ABZR87_RS16055at 3394.153 kb on + strand, within ABZR87_RS16055at 3394.154 kb on - strand, within ABZR87_RS16055at 3394.154 kb on - strand, within ABZR87_RS16055at 3394.154 kb on - strand, within ABZR87_RS16055at 3394.281 kb on + strand, within ABZR87_RS16055at 3394.281 kb on + strand, within ABZR87_RS16055at 3394.281 kb on + strand, within ABZR87_RS16055at 3394.281 kb on + strand, within ABZR87_RS16055at 3394.282 kb on - strand, within ABZR87_RS16055at 3394.282 kb on - strand, within ABZR87_RS16055at 3394.282 kb on - strand, within ABZR87_RS16055at 3394.282 kb on - strand, within ABZR87_RS16055at 3394.282 kb on - strand, within ABZR87_RS16055at 3394.282 kb on - strand, within ABZR87_RS16055at 3394.282 kb on - strand, within ABZR87_RS16055at 3394.317 kb on + strand, within ABZR87_RS16055at 3394.329 kb on + strand, within ABZR87_RS16055at 3394.329 kb on + strand, within ABZR87_RS16055at 3394.330 kb on - strand, within ABZR87_RS16055at 3394.330 kb on - strand, within ABZR87_RS16055at 3394.500 kb on + strand, within ABZR87_RS16055at 3394.500 kb on + strand, within ABZR87_RS16055at 3394.500 kb on + strand, within ABZR87_RS16055at 3394.501 kb on - strand, within ABZR87_RS16055at 3394.501 kb on - strand, within ABZR87_RS16055at 3394.573 kb on + strandat 3394.573 kb on + strandat 3394.574 kb on - strandat 3394.574 kb on - strandat 3394.574 kb on - strandat 3394.604 kb on + strandat 3394.604 kb on + strandat 3394.604 kb on + strandat 3394.605 kb on - strandat 3394.652 kb on - strandat 3394.790 kb on - strandat 3394.790 kb on - strandat 3394.818 kb on + strandat 3394.819 kb on - strandat 3394.896 kb on + strandat 3395.008 kb on - strand, within ABZR87_RS16060at 3395.008 kb on - strand, within ABZR87_RS16060at 3395.115 kb on + strand, within ABZR87_RS16060at 3395.115 kb on + strand, within ABZR87_RS16060at 3395.115 kb on + strand, within ABZR87_RS16060at 3395.529 kb on + strand, within ABZR87_RS16060at 3395.529 kb on + strand, within ABZR87_RS16060

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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3,392,997 + ABZR87_RS16045 0.51 +1.1
3,392,997 + ABZR87_RS16045 0.51 -0.0
3,393,010 + ABZR87_RS16045 0.52 -0.1
3,393,011 - ABZR87_RS16045 0.52 -0.5
3,393,041 - ABZR87_RS16045 0.56 -0.8
3,393,073 + ABZR87_RS16045 0.59 -0.0
3,393,074 - ABZR87_RS16045 0.59 +2.1
3,393,268 + ABZR87_RS16045 0.81 +0.5
3,393,268 + ABZR87_RS16045 0.81 -0.3
3,393,269 - ABZR87_RS16045 0.81 +0.6
3,393,269 - ABZR87_RS16045 0.81 +0.1
3,393,269 - ABZR87_RS16045 0.81 -0.3
3,393,295 + ABZR87_RS16045 0.84 -0.7
3,393,295 + ABZR87_RS16045 0.84 +0.3
3,393,296 - ABZR87_RS16045 0.84 +0.5
3,393,296 - ABZR87_RS16045 0.84 +1.1
3,393,296 - ABZR87_RS16045 0.84 -0.3
3,393,344 - ABZR87_RS16045 0.89 +0.2
3,393,437 - +0.2
3,393,896 + +0.4
3,393,897 - +0.0
3,393,897 - -0.3
3,393,962 - -0.1
3,393,962 - -0.7
3,394,153 + ABZR87_RS16055 0.35 -0.2
3,394,153 + ABZR87_RS16055 0.35 -0.4
3,394,153 + ABZR87_RS16055 0.35 -1.0
3,394,154 - ABZR87_RS16055 0.35 -0.4
3,394,154 - ABZR87_RS16055 0.35 +0.1
3,394,154 - ABZR87_RS16055 0.35 -0.2
3,394,281 + ABZR87_RS16055 0.55 -0.3
3,394,281 + ABZR87_RS16055 0.55 -0.8
3,394,281 + ABZR87_RS16055 0.55 -0.1
3,394,281 + ABZR87_RS16055 0.55 -0.4
3,394,282 - ABZR87_RS16055 0.55 -1.9
3,394,282 - ABZR87_RS16055 0.55 -2.3
3,394,282 - ABZR87_RS16055 0.55 -1.5
3,394,282 - ABZR87_RS16055 0.55 -1.1
3,394,282 - ABZR87_RS16055 0.55 -1.8
3,394,282 - ABZR87_RS16055 0.55 -1.7
3,394,282 - ABZR87_RS16055 0.55 -0.3
3,394,317 + ABZR87_RS16055 0.60 -0.2
3,394,329 + ABZR87_RS16055 0.62 -0.7
3,394,329 + ABZR87_RS16055 0.62 -1.3
3,394,330 - ABZR87_RS16055 0.62 -0.3
3,394,330 - ABZR87_RS16055 0.62 -1.1
3,394,500 + ABZR87_RS16055 0.89 -0.7
3,394,500 + ABZR87_RS16055 0.89 -0.6
3,394,500 + ABZR87_RS16055 0.89 +0.4
3,394,501 - ABZR87_RS16055 0.89 +0.5
3,394,501 - ABZR87_RS16055 0.89 -0.7
3,394,573 + -0.4
3,394,573 + -0.2
3,394,574 - +0.0
3,394,574 - +0.5
3,394,574 - -0.7
3,394,604 + -1.6
3,394,604 + -0.5
3,394,604 + -0.4
3,394,605 - +0.0
3,394,652 - +0.2
3,394,790 - +0.8
3,394,790 - -0.3
3,394,818 + +0.4
3,394,819 - -0.4
3,394,896 + +0.2
3,395,008 - ABZR87_RS16060 0.13 -0.0
3,395,008 - ABZR87_RS16060 0.13 -0.9
3,395,115 + ABZR87_RS16060 0.18 +0.9
3,395,115 + ABZR87_RS16060 0.18 +1.0
3,395,115 + ABZR87_RS16060 0.18 +0.0
3,395,529 + ABZR87_RS16060 0.36 +0.5
3,395,529 + ABZR87_RS16060 0.36 -0.1

Or see this region's nucleotide sequence