Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS13645

Experiment: D-Galactose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS13630 and ABZR87_RS13635 are separated by 38 nucleotidesABZR87_RS13635 and ABZR87_RS13640 are separated by 38 nucleotidesABZR87_RS13640 and ABZR87_RS13645 are separated by 69 nucleotidesABZR87_RS13645 and ABZR87_RS13650 are separated by 132 nucleotides ABZR87_RS13630: ABZR87_RS13630 - hypothetical protein, at 2,881,808 to 2,882,119 _RS13630 ABZR87_RS13635: ABZR87_RS13635 - hypothetical protein, at 2,882,158 to 2,882,706 _RS13635 ABZR87_RS13640: ABZR87_RS13640 - hypothetical protein, at 2,882,745 to 2,883,044 _RS13640 ABZR87_RS13645: ABZR87_RS13645 - hypothetical protein, at 2,883,114 to 2,883,269 _RS13645 ABZR87_RS13650: ABZR87_RS13650 - RHS repeat domain-containing protein, at 2,883,402 to 2,885,855 _RS13650 Position (kb) 2883 2884Strain fitness (log2 ratio) -2 -1 0 1 2at 2882.130 kb on + strandat 2882.131 kb on - strandat 2882.196 kb on + strandat 2882.196 kb on + strandat 2882.197 kb on - strandat 2882.402 kb on - strand, within ABZR87_RS13635at 2882.411 kb on + strand, within ABZR87_RS13635at 2882.411 kb on + strand, within ABZR87_RS13635at 2882.411 kb on + strand, within ABZR87_RS13635at 2882.412 kb on - strand, within ABZR87_RS13635at 2882.412 kb on - strand, within ABZR87_RS13635at 2882.412 kb on - strand, within ABZR87_RS13635at 2882.412 kb on - strand, within ABZR87_RS13635at 2882.415 kb on + strand, within ABZR87_RS13635at 2882.416 kb on - strand, within ABZR87_RS13635at 2882.428 kb on + strand, within ABZR87_RS13635at 2882.428 kb on + strand, within ABZR87_RS13635at 2882.429 kb on - strand, within ABZR87_RS13635at 2882.429 kb on - strand, within ABZR87_RS13635at 2882.429 kb on - strand, within ABZR87_RS13635at 2882.429 kb on - strand, within ABZR87_RS13635at 2882.429 kb on - strand, within ABZR87_RS13635at 2882.429 kb on - strand, within ABZR87_RS13635at 2882.485 kb on + strand, within ABZR87_RS13635at 2882.485 kb on + strand, within ABZR87_RS13635at 2882.485 kb on + strand, within ABZR87_RS13635at 2882.486 kb on - strand, within ABZR87_RS13635at 2882.486 kb on - strand, within ABZR87_RS13635at 2882.486 kb on - strand, within ABZR87_RS13635at 2882.498 kb on - strand, within ABZR87_RS13635at 2882.511 kb on + strand, within ABZR87_RS13635at 2882.666 kb on + strandat 2882.746 kb on + strandat 2882.747 kb on - strandat 2882.747 kb on - strandat 2882.785 kb on + strand, within ABZR87_RS13640at 2882.785 kb on + strand, within ABZR87_RS13640at 2882.785 kb on + strand, within ABZR87_RS13640at 2882.786 kb on - strand, within ABZR87_RS13640at 2882.786 kb on - strand, within ABZR87_RS13640at 2882.786 kb on - strand, within ABZR87_RS13640at 2882.786 kb on - strand, within ABZR87_RS13640at 2882.789 kb on + strand, within ABZR87_RS13640at 2882.789 kb on + strand, within ABZR87_RS13640at 2882.790 kb on - strand, within ABZR87_RS13640at 2882.790 kb on - strand, within ABZR87_RS13640at 2882.790 kb on - strand, within ABZR87_RS13640at 2882.834 kb on - strand, within ABZR87_RS13640at 2882.834 kb on - strand, within ABZR87_RS13640at 2882.958 kb on + strand, within ABZR87_RS13640at 2882.958 kb on + strand, within ABZR87_RS13640at 2882.959 kb on - strand, within ABZR87_RS13640at 2882.959 kb on - strand, within ABZR87_RS13640at 2882.959 kb on - strand, within ABZR87_RS13640at 2882.966 kb on - strand, within ABZR87_RS13640at 2882.966 kb on - strand, within ABZR87_RS13640at 2883.067 kb on + strandat 2883.068 kb on - strandat 2883.094 kb on + strandat 2883.095 kb on - strandat 2883.147 kb on - strand, within ABZR87_RS13645at 2883.269 kb on + strandat 2883.363 kb on + strandat 2883.469 kb on + strandat 2883.469 kb on + strandat 2883.469 kb on + strandat 2883.469 kb on + strandat 2883.469 kb on + strandat 2883.469 kb on + strandat 2883.469 kb on + strandat 2883.469 kb on + strandat 2883.470 kb on - strandat 2883.470 kb on - strandat 2883.470 kb on - strandat 2883.470 kb on - strandat 2883.470 kb on - strandat 2883.470 kb on - strandat 2883.472 kb on + strandat 2883.473 kb on - strandat 2883.544 kb on - strandat 2883.544 kb on - strandat 2883.560 kb on + strandat 2883.560 kb on + strandat 2883.561 kb on - strandat 2883.561 kb on - strandat 2883.561 kb on - strandat 2883.615 kb on - strandat 2883.624 kb on - strandat 2883.639 kb on + strandat 2883.640 kb on - strandat 2883.640 kb on - strandat 2883.640 kb on - strandat 2883.640 kb on - strandat 2883.788 kb on + strand, within ABZR87_RS13650at 2883.788 kb on + strand, within ABZR87_RS13650at 2883.789 kb on - strand, within ABZR87_RS13650at 2883.789 kb on - strand, within ABZR87_RS13650at 2883.801 kb on + strand, within ABZR87_RS13650at 2883.801 kb on + strand, within ABZR87_RS13650at 2883.801 kb on + strand, within ABZR87_RS13650at 2883.802 kb on - strand, within ABZR87_RS13650at 2883.802 kb on - strand, within ABZR87_RS13650at 2883.821 kb on + strand, within ABZR87_RS13650at 2883.822 kb on - strand, within ABZR87_RS13650at 2883.822 kb on - strand, within ABZR87_RS13650at 2883.822 kb on - strand, within ABZR87_RS13650at 2883.983 kb on + strand, within ABZR87_RS13650at 2883.984 kb on - strand, within ABZR87_RS13650at 2883.984 kb on - strand, within ABZR87_RS13650at 2883.984 kb on - strand, within ABZR87_RS13650at 2883.984 kb on - strand, within ABZR87_RS13650at 2883.984 kb on - strand, within ABZR87_RS13650at 2883.984 kb on - strand, within ABZR87_RS13650at 2883.984 kb on - strand, within ABZR87_RS13650at 2883.998 kb on - strand, within ABZR87_RS13650at 2884.006 kb on + strand, within ABZR87_RS13650at 2884.006 kb on + strand, within ABZR87_RS13650at 2884.006 kb on + strand, within ABZR87_RS13650at 2884.006 kb on + strand, within ABZR87_RS13650at 2884.006 kb on + strand, within ABZR87_RS13650at 2884.006 kb on + strand, within ABZR87_RS13650at 2884.006 kb on + strand, within ABZR87_RS13650at 2884.007 kb on - strand, within ABZR87_RS13650at 2884.007 kb on - strand, within ABZR87_RS13650at 2884.007 kb on - strand, within ABZR87_RS13650at 2884.007 kb on - strand, within ABZR87_RS13650at 2884.007 kb on - strand, within ABZR87_RS13650at 2884.025 kb on + strand, within ABZR87_RS13650at 2884.054 kb on + strand, within ABZR87_RS13650at 2884.054 kb on + strand, within ABZR87_RS13650at 2884.054 kb on + strand, within ABZR87_RS13650at 2884.061 kb on - strand, within ABZR87_RS13650at 2884.061 kb on - strand, within ABZR87_RS13650at 2884.061 kb on - strand, within ABZR87_RS13650at 2884.087 kb on + strand, within ABZR87_RS13650at 2884.114 kb on + strand, within ABZR87_RS13650at 2884.114 kb on + strand, within ABZR87_RS13650at 2884.115 kb on - strand, within ABZR87_RS13650at 2884.115 kb on - strand, within ABZR87_RS13650at 2884.115 kb on - strand, within ABZR87_RS13650at 2884.115 kb on - strand, within ABZR87_RS13650at 2884.115 kb on - strand, within ABZR87_RS13650at 2884.115 kb on - strand, within ABZR87_RS13650at 2884.115 kb on - strand, within ABZR87_RS13650at 2884.177 kb on + strand, within ABZR87_RS13650at 2884.178 kb on - strand, within ABZR87_RS13650at 2884.178 kb on - strand, within ABZR87_RS13650at 2884.243 kb on + strand, within ABZR87_RS13650at 2884.244 kb on - strand, within ABZR87_RS13650at 2884.244 kb on - strand, within ABZR87_RS13650at 2884.248 kb on - strand, within ABZR87_RS13650

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
remove
2,882,130 + -0.3
2,882,131 - +0.2
2,882,196 + +0.4
2,882,196 + +0.2
2,882,197 - +0.7
2,882,402 - ABZR87_RS13635 0.44 +1.5
2,882,411 + ABZR87_RS13635 0.46 -0.5
2,882,411 + ABZR87_RS13635 0.46 -0.1
2,882,411 + ABZR87_RS13635 0.46 -0.1
2,882,412 - ABZR87_RS13635 0.46 +0.0
2,882,412 - ABZR87_RS13635 0.46 +0.3
2,882,412 - ABZR87_RS13635 0.46 +1.0
2,882,412 - ABZR87_RS13635 0.46 +0.2
2,882,415 + ABZR87_RS13635 0.47 -0.0
2,882,416 - ABZR87_RS13635 0.47 -1.0
2,882,428 + ABZR87_RS13635 0.49 -0.3
2,882,428 + ABZR87_RS13635 0.49 +0.0
2,882,429 - ABZR87_RS13635 0.49 -0.1
2,882,429 - ABZR87_RS13635 0.49 -0.1
2,882,429 - ABZR87_RS13635 0.49 -0.2
2,882,429 - ABZR87_RS13635 0.49 -0.0
2,882,429 - ABZR87_RS13635 0.49 +1.0
2,882,429 - ABZR87_RS13635 0.49 +0.3
2,882,485 + ABZR87_RS13635 0.60 -1.0
2,882,485 + ABZR87_RS13635 0.60 +0.5
2,882,485 + ABZR87_RS13635 0.60 +1.4
2,882,486 - ABZR87_RS13635 0.60 +0.5
2,882,486 - ABZR87_RS13635 0.60 -1.1
2,882,486 - ABZR87_RS13635 0.60 +0.7
2,882,498 - ABZR87_RS13635 0.62 +0.9
2,882,511 + ABZR87_RS13635 0.64 +0.1
2,882,666 + +0.5
2,882,746 + -0.8
2,882,747 - +0.4
2,882,747 - -2.0
2,882,785 + ABZR87_RS13640 0.13 -0.7
2,882,785 + ABZR87_RS13640 0.13 +0.7
2,882,785 + ABZR87_RS13640 0.13 -0.0
2,882,786 - ABZR87_RS13640 0.14 +0.4
2,882,786 - ABZR87_RS13640 0.14 +0.5
2,882,786 - ABZR87_RS13640 0.14 +0.1
2,882,786 - ABZR87_RS13640 0.14 -1.8
2,882,789 + ABZR87_RS13640 0.15 -1.1
2,882,789 + ABZR87_RS13640 0.15 -0.1
2,882,790 - ABZR87_RS13640 0.15 +0.1
2,882,790 - ABZR87_RS13640 0.15 +0.3
2,882,790 - ABZR87_RS13640 0.15 +0.3
2,882,834 - ABZR87_RS13640 0.30 -0.2
2,882,834 - ABZR87_RS13640 0.30 +0.0
2,882,958 + ABZR87_RS13640 0.71 -1.1
2,882,958 + ABZR87_RS13640 0.71 +0.1
2,882,959 - ABZR87_RS13640 0.71 -0.1
2,882,959 - ABZR87_RS13640 0.71 +0.5
2,882,959 - ABZR87_RS13640 0.71 +0.1
2,882,966 - ABZR87_RS13640 0.74 +0.1
2,882,966 - ABZR87_RS13640 0.74 -0.6
2,883,067 + -0.4
2,883,068 - +0.2
2,883,094 + -0.2
2,883,095 - +0.4
2,883,147 - ABZR87_RS13645 0.21 -0.8
2,883,269 + -0.4
2,883,363 + -1.0
2,883,469 + -1.0
2,883,469 + -0.2
2,883,469 + -0.0
2,883,469 + -0.5
2,883,469 + +0.3
2,883,469 + -1.4
2,883,469 + +0.3
2,883,469 + -0.0
2,883,470 - +0.0
2,883,470 - -0.3
2,883,470 - +0.7
2,883,470 - -0.3
2,883,470 - +0.0
2,883,470 - -0.0
2,883,472 + +0.1
2,883,473 - +0.2
2,883,544 - -0.1
2,883,544 - -0.4
2,883,560 + -0.5
2,883,560 + +1.0
2,883,561 - -0.5
2,883,561 - +0.8
2,883,561 - +0.9
2,883,615 - +0.3
2,883,624 - +0.3
2,883,639 + -0.2
2,883,640 - -0.3
2,883,640 - -0.5
2,883,640 - -0.3
2,883,640 - -0.3
2,883,788 + ABZR87_RS13650 0.16 +0.5
2,883,788 + ABZR87_RS13650 0.16 -0.6
2,883,789 - ABZR87_RS13650 0.16 -1.1
2,883,789 - ABZR87_RS13650 0.16 -0.3
2,883,801 + ABZR87_RS13650 0.16 +0.2
2,883,801 + ABZR87_RS13650 0.16 -0.4
2,883,801 + ABZR87_RS13650 0.16 -1.2
2,883,802 - ABZR87_RS13650 0.16 -0.2
2,883,802 - ABZR87_RS13650 0.16 -0.3
2,883,821 + ABZR87_RS13650 0.17 +0.3
2,883,822 - ABZR87_RS13650 0.17 -0.1
2,883,822 - ABZR87_RS13650 0.17 +0.3
2,883,822 - ABZR87_RS13650 0.17 +1.3
2,883,983 + ABZR87_RS13650 0.24 -0.5
2,883,984 - ABZR87_RS13650 0.24 +0.4
2,883,984 - ABZR87_RS13650 0.24 -0.1
2,883,984 - ABZR87_RS13650 0.24 +0.0
2,883,984 - ABZR87_RS13650 0.24 -0.7
2,883,984 - ABZR87_RS13650 0.24 -0.3
2,883,984 - ABZR87_RS13650 0.24 +0.1
2,883,984 - ABZR87_RS13650 0.24 +0.4
2,883,998 - ABZR87_RS13650 0.24 -0.1
2,884,006 + ABZR87_RS13650 0.25 +0.8
2,884,006 + ABZR87_RS13650 0.25 -0.8
2,884,006 + ABZR87_RS13650 0.25 -0.4
2,884,006 + ABZR87_RS13650 0.25 +0.9
2,884,006 + ABZR87_RS13650 0.25 -0.4
2,884,006 + ABZR87_RS13650 0.25 +0.4
2,884,006 + ABZR87_RS13650 0.25 -0.1
2,884,007 - ABZR87_RS13650 0.25 +0.4
2,884,007 - ABZR87_RS13650 0.25 +0.0
2,884,007 - ABZR87_RS13650 0.25 +0.9
2,884,007 - ABZR87_RS13650 0.25 +0.5
2,884,007 - ABZR87_RS13650 0.25 -0.1
2,884,025 + ABZR87_RS13650 0.25 +0.7
2,884,054 + ABZR87_RS13650 0.27 +0.0
2,884,054 + ABZR87_RS13650 0.27 +1.0
2,884,054 + ABZR87_RS13650 0.27 +0.4
2,884,061 - ABZR87_RS13650 0.27 +0.8
2,884,061 - ABZR87_RS13650 0.27 +0.2
2,884,061 - ABZR87_RS13650 0.27 -2.1
2,884,087 + ABZR87_RS13650 0.28 -0.5
2,884,114 + ABZR87_RS13650 0.29 +0.7
2,884,114 + ABZR87_RS13650 0.29 +0.0
2,884,115 - ABZR87_RS13650 0.29 -0.4
2,884,115 - ABZR87_RS13650 0.29 +0.7
2,884,115 - ABZR87_RS13650 0.29 -0.3
2,884,115 - ABZR87_RS13650 0.29 +1.0
2,884,115 - ABZR87_RS13650 0.29 +0.3
2,884,115 - ABZR87_RS13650 0.29 -0.0
2,884,115 - ABZR87_RS13650 0.29 -0.7
2,884,177 + ABZR87_RS13650 0.32 -0.0
2,884,178 - ABZR87_RS13650 0.32 +1.8
2,884,178 - ABZR87_RS13650 0.32 +0.5
2,884,243 + ABZR87_RS13650 0.34 +0.3
2,884,244 - ABZR87_RS13650 0.34 +0.2
2,884,244 - ABZR87_RS13650 0.34 -0.3
2,884,248 - ABZR87_RS13650 0.34 +0.5

Or see this region's nucleotide sequence