Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS13410 and ABZR87_RS13415 are separated by 240 nucleotides ABZR87_RS13415 and ABZR87_RS13420 are separated by 66 nucleotides
ABZR87_RS13410: ABZR87_RS13410 - (Fe-S)-binding protein, at 2,839,712 to 2,840,437
_RS13410
ABZR87_RS13415: ABZR87_RS13415 - IclR family transcriptional regulator, at 2,840,678 to 2,841,475
_RS13415
ABZR87_RS13420: ABZR87_RS13420 - D-alanyl-D-alanine endopeptidase, at 2,841,542 to 2,842,732
_RS13420
Position (kb)
2840
2841
2842 Strain fitness (log2 ratio)
-2
-1
0
1 at 2839.792 kb on + strand, within ABZR87_RS13410 at 2839.885 kb on + strand, within ABZR87_RS13410 at 2839.886 kb on - strand, within ABZR87_RS13410 at 2839.886 kb on - strand, within ABZR87_RS13410 at 2839.886 kb on - strand, within ABZR87_RS13410 at 2839.893 kb on + strand, within ABZR87_RS13410 at 2839.893 kb on + strand, within ABZR87_RS13410 at 2839.893 kb on + strand, within ABZR87_RS13410 at 2840.037 kb on + strand, within ABZR87_RS13410 at 2840.037 kb on + strand, within ABZR87_RS13410 at 2840.112 kb on + strand, within ABZR87_RS13410 at 2840.112 kb on + strand, within ABZR87_RS13410 at 2840.112 kb on + strand, within ABZR87_RS13410 at 2840.112 kb on + strand, within ABZR87_RS13410 at 2840.112 kb on + strand, within ABZR87_RS13410 at 2840.112 kb on + strand, within ABZR87_RS13410 at 2840.112 kb on + strand, within ABZR87_RS13410 at 2840.113 kb on - strand, within ABZR87_RS13410 at 2840.136 kb on + strand, within ABZR87_RS13410 at 2840.227 kb on - strand, within ABZR87_RS13410 at 2840.298 kb on + strand, within ABZR87_RS13410 at 2840.298 kb on + strand, within ABZR87_RS13410 at 2840.298 kb on + strand, within ABZR87_RS13410 at 2840.299 kb on - strand, within ABZR87_RS13410 at 2840.299 kb on - strand, within ABZR87_RS13410 at 2840.347 kb on - strand, within ABZR87_RS13410 at 2840.402 kb on - strand at 2840.429 kb on + strand at 2840.429 kb on + strand at 2840.472 kb on - strand at 2840.472 kb on - strand at 2840.502 kb on + strand at 2840.502 kb on + strand at 2840.885 kb on + strand, within ABZR87_RS13415 at 2840.886 kb on - strand, within ABZR87_RS13415 at 2840.886 kb on - strand, within ABZR87_RS13415 at 2840.886 kb on - strand, within ABZR87_RS13415 at 2841.012 kb on + strand, within ABZR87_RS13415 at 2841.013 kb on - strand, within ABZR87_RS13415 at 2841.035 kb on + strand, within ABZR87_RS13415 at 2841.035 kb on + strand, within ABZR87_RS13415 at 2841.050 kb on + strand, within ABZR87_RS13415 at 2841.051 kb on - strand, within ABZR87_RS13415 at 2841.167 kb on + strand, within ABZR87_RS13415 at 2841.263 kb on + strand, within ABZR87_RS13415 at 2841.264 kb on - strand, within ABZR87_RS13415 at 2841.264 kb on - strand, within ABZR87_RS13415 at 2841.320 kb on + strand, within ABZR87_RS13415 at 2841.320 kb on + strand, within ABZR87_RS13415 at 2841.320 kb on + strand, within ABZR87_RS13415 at 2841.320 kb on + strand, within ABZR87_RS13415 at 2841.320 kb on + strand, within ABZR87_RS13415 at 2841.320 kb on + strand, within ABZR87_RS13415 at 2841.320 kb on + strand, within ABZR87_RS13415 at 2841.320 kb on + strand, within ABZR87_RS13415 at 2841.320 kb on + strand, within ABZR87_RS13415 at 2841.320 kb on + strand, within ABZR87_RS13415 at 2841.320 kb on + strand, within ABZR87_RS13415 at 2841.320 kb on + strand, within ABZR87_RS13415 at 2841.320 kb on + strand, within ABZR87_RS13415 at 2841.321 kb on - strand, within ABZR87_RS13415 at 2841.321 kb on - strand, within ABZR87_RS13415 at 2841.321 kb on - strand, within ABZR87_RS13415 at 2841.321 kb on - strand, within ABZR87_RS13415 at 2841.321 kb on - strand, within ABZR87_RS13415 at 2841.321 kb on - strand, within ABZR87_RS13415 at 2841.321 kb on - strand, within ABZR87_RS13415 at 2841.321 kb on - strand, within ABZR87_RS13415 at 2841.441 kb on - strand at 2841.441 kb on - strand at 2841.457 kb on + strand at 2841.457 kb on + strand at 2841.457 kb on + strand at 2841.457 kb on + strand at 2841.458 kb on - strand at 2841.458 kb on - strand at 2841.458 kb on - strand at 2841.458 kb on - strand at 2841.458 kb on - strand at 2841.458 kb on - strand at 2841.473 kb on + strand at 2841.805 kb on + strand, within ABZR87_RS13420 at 2841.846 kb on + strand, within ABZR87_RS13420 at 2841.846 kb on + strand, within ABZR87_RS13420 at 2841.846 kb on + strand, within ABZR87_RS13420 at 2841.847 kb on - strand, within ABZR87_RS13420 at 2841.877 kb on + strand, within ABZR87_RS13420 at 2841.877 kb on + strand, within ABZR87_RS13420 at 2841.878 kb on - strand, within ABZR87_RS13420 at 2841.878 kb on - strand, within ABZR87_RS13420 at 2841.878 kb on - strand, within ABZR87_RS13420 at 2841.878 kb on - strand, within ABZR87_RS13420 at 2841.878 kb on - strand, within ABZR87_RS13420 at 2841.878 kb on - strand, within ABZR87_RS13420 at 2841.921 kb on + strand, within ABZR87_RS13420 at 2841.922 kb on - strand, within ABZR87_RS13420 at 2841.996 kb on + strand, within ABZR87_RS13420 at 2841.996 kb on + strand, within ABZR87_RS13420 at 2841.996 kb on + strand, within ABZR87_RS13420 at 2841.997 kb on - strand, within ABZR87_RS13420 at 2841.997 kb on - strand, within ABZR87_RS13420 at 2841.997 kb on - strand, within ABZR87_RS13420 at 2841.997 kb on - strand, within ABZR87_RS13420 at 2841.997 kb on - strand, within ABZR87_RS13420 at 2842.071 kb on + strand, within ABZR87_RS13420 at 2842.072 kb on - strand, within ABZR87_RS13420 at 2842.072 kb on - strand, within ABZR87_RS13420 at 2842.072 kb on - strand, within ABZR87_RS13420 at 2842.072 kb on - strand, within ABZR87_RS13420 at 2842.072 kb on - strand, within ABZR87_RS13420 at 2842.178 kb on - strand, within ABZR87_RS13420 at 2842.188 kb on + strand, within ABZR87_RS13420 at 2842.188 kb on + strand, within ABZR87_RS13420 at 2842.188 kb on + strand, within ABZR87_RS13420 at 2842.189 kb on - strand, within ABZR87_RS13420 at 2842.207 kb on + strand, within ABZR87_RS13420
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 2,839,792 + ABZR87_RS13410 0.11 -0.7 2,839,885 + ABZR87_RS13410 0.24 +1.3 2,839,886 - ABZR87_RS13410 0.24 +1.6 2,839,886 - ABZR87_RS13410 0.24 +0.7 2,839,886 - ABZR87_RS13410 0.24 +0.5 2,839,893 + ABZR87_RS13410 0.25 -0.2 2,839,893 + ABZR87_RS13410 0.25 +0.4 2,839,893 + ABZR87_RS13410 0.25 +0.3 2,840,037 + ABZR87_RS13410 0.45 +0.8 2,840,037 + ABZR87_RS13410 0.45 -0.9 2,840,112 + ABZR87_RS13410 0.55 -0.3 2,840,112 + ABZR87_RS13410 0.55 +0.0 2,840,112 + ABZR87_RS13410 0.55 -0.4 2,840,112 + ABZR87_RS13410 0.55 +0.0 2,840,112 + ABZR87_RS13410 0.55 -0.3 2,840,112 + ABZR87_RS13410 0.55 +0.2 2,840,112 + ABZR87_RS13410 0.55 -0.8 2,840,113 - ABZR87_RS13410 0.55 +0.1 2,840,136 + ABZR87_RS13410 0.58 -0.2 2,840,227 - ABZR87_RS13410 0.71 +0.1 2,840,298 + ABZR87_RS13410 0.81 -1.0 2,840,298 + ABZR87_RS13410 0.81 +0.3 2,840,298 + ABZR87_RS13410 0.81 -0.4 2,840,299 - ABZR87_RS13410 0.81 -0.7 2,840,299 - ABZR87_RS13410 0.81 -0.6 2,840,347 - ABZR87_RS13410 0.87 +0.1 2,840,402 - -0.7 2,840,429 + +0.4 2,840,429 + -1.6 2,840,472 - +1.0 2,840,472 - -0.1 2,840,502 + -0.5 2,840,502 + -0.1 2,840,885 + ABZR87_RS13415 0.26 -1.5 2,840,886 - ABZR87_RS13415 0.26 -0.5 2,840,886 - ABZR87_RS13415 0.26 -0.5 2,840,886 - ABZR87_RS13415 0.26 -1.0 2,841,012 + ABZR87_RS13415 0.42 -1.7 2,841,013 - ABZR87_RS13415 0.42 -0.4 2,841,035 + ABZR87_RS13415 0.45 -0.7 2,841,035 + ABZR87_RS13415 0.45 -0.1 2,841,050 + ABZR87_RS13415 0.47 -0.5 2,841,051 - ABZR87_RS13415 0.47 -1.4 2,841,167 + ABZR87_RS13415 0.61 -2.5 2,841,263 + ABZR87_RS13415 0.73 +0.9 2,841,264 - ABZR87_RS13415 0.73 +1.4 2,841,264 - ABZR87_RS13415 0.73 -2.2 2,841,320 + ABZR87_RS13415 0.80 -1.0 2,841,320 + ABZR87_RS13415 0.80 -1.7 2,841,320 + ABZR87_RS13415 0.80 -1.3 2,841,320 + ABZR87_RS13415 0.80 -2.5 2,841,320 + ABZR87_RS13415 0.80 -0.5 2,841,320 + ABZR87_RS13415 0.80 +0.4 2,841,320 + ABZR87_RS13415 0.80 -1.2 2,841,320 + ABZR87_RS13415 0.80 +0.6 2,841,320 + ABZR87_RS13415 0.80 +0.1 2,841,320 + ABZR87_RS13415 0.80 -0.2 2,841,320 + ABZR87_RS13415 0.80 -1.2 2,841,320 + ABZR87_RS13415 0.80 -1.8 2,841,320 + ABZR87_RS13415 0.80 -2.2 2,841,321 - ABZR87_RS13415 0.81 -2.1 2,841,321 - ABZR87_RS13415 0.81 -0.4 2,841,321 - ABZR87_RS13415 0.81 +0.0 2,841,321 - ABZR87_RS13415 0.81 -0.7 2,841,321 - ABZR87_RS13415 0.81 -1.9 2,841,321 - ABZR87_RS13415 0.81 -0.7 2,841,321 - ABZR87_RS13415 0.81 -1.1 2,841,321 - ABZR87_RS13415 0.81 +0.4 2,841,441 - -0.8 2,841,441 - +0.8 2,841,457 + -0.5 2,841,457 + -0.5 2,841,457 + -1.0 2,841,457 + -0.2 2,841,458 - -0.9 2,841,458 - +0.3 2,841,458 - +0.4 2,841,458 - -1.2 2,841,458 - -0.9 2,841,458 - -0.7 2,841,473 + -0.9 2,841,805 + ABZR87_RS13420 0.22 +0.6 2,841,846 + ABZR87_RS13420 0.26 +0.3 2,841,846 + ABZR87_RS13420 0.26 +0.2 2,841,846 + ABZR87_RS13420 0.26 +0.3 2,841,847 - ABZR87_RS13420 0.26 +0.0 2,841,877 + ABZR87_RS13420 0.28 +0.5 2,841,877 + ABZR87_RS13420 0.28 -0.1 2,841,878 - ABZR87_RS13420 0.28 -0.5 2,841,878 - ABZR87_RS13420 0.28 +0.3 2,841,878 - ABZR87_RS13420 0.28 +0.2 2,841,878 - ABZR87_RS13420 0.28 +0.1 2,841,878 - ABZR87_RS13420 0.28 -0.2 2,841,878 - ABZR87_RS13420 0.28 +1.0 2,841,921 + ABZR87_RS13420 0.32 +0.5 2,841,922 - ABZR87_RS13420 0.32 -0.0 2,841,996 + ABZR87_RS13420 0.38 +0.5 2,841,996 + ABZR87_RS13420 0.38 -0.0 2,841,996 + ABZR87_RS13420 0.38 +0.0 2,841,997 - ABZR87_RS13420 0.38 +0.1 2,841,997 - ABZR87_RS13420 0.38 -0.6 2,841,997 - ABZR87_RS13420 0.38 -0.8 2,841,997 - ABZR87_RS13420 0.38 +0.1 2,841,997 - ABZR87_RS13420 0.38 +0.6 2,842,071 + ABZR87_RS13420 0.44 -0.3 2,842,072 - ABZR87_RS13420 0.45 +0.3 2,842,072 - ABZR87_RS13420 0.45 -1.2 2,842,072 - ABZR87_RS13420 0.45 +0.8 2,842,072 - ABZR87_RS13420 0.45 +0.2 2,842,072 - ABZR87_RS13420 0.45 +0.2 2,842,178 - ABZR87_RS13420 0.53 +0.2 2,842,188 + ABZR87_RS13420 0.54 -0.5 2,842,188 + ABZR87_RS13420 0.54 -0.3 2,842,188 + ABZR87_RS13420 0.54 +0.9 2,842,189 - ABZR87_RS13420 0.54 +0.0 2,842,207 + ABZR87_RS13420 0.56 -0.3
Or see this region's nucleotide sequence