Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS13415

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS13410 and ABZR87_RS13415 are separated by 240 nucleotidesABZR87_RS13415 and ABZR87_RS13420 are separated by 66 nucleotides ABZR87_RS13410: ABZR87_RS13410 - (Fe-S)-binding protein, at 2,839,712 to 2,840,437 _RS13410 ABZR87_RS13415: ABZR87_RS13415 - IclR family transcriptional regulator, at 2,840,678 to 2,841,475 _RS13415 ABZR87_RS13420: ABZR87_RS13420 - D-alanyl-D-alanine endopeptidase, at 2,841,542 to 2,842,732 _RS13420 Position (kb) 2840 2841 2842Strain fitness (log2 ratio) -2 -1 0 1at 2839.792 kb on + strand, within ABZR87_RS13410at 2839.885 kb on + strand, within ABZR87_RS13410at 2839.886 kb on - strand, within ABZR87_RS13410at 2839.886 kb on - strand, within ABZR87_RS13410at 2839.886 kb on - strand, within ABZR87_RS13410at 2839.893 kb on + strand, within ABZR87_RS13410at 2839.893 kb on + strand, within ABZR87_RS13410at 2839.893 kb on + strand, within ABZR87_RS13410at 2840.037 kb on + strand, within ABZR87_RS13410at 2840.037 kb on + strand, within ABZR87_RS13410at 2840.112 kb on + strand, within ABZR87_RS13410at 2840.112 kb on + strand, within ABZR87_RS13410at 2840.112 kb on + strand, within ABZR87_RS13410at 2840.112 kb on + strand, within ABZR87_RS13410at 2840.112 kb on + strand, within ABZR87_RS13410at 2840.112 kb on + strand, within ABZR87_RS13410at 2840.112 kb on + strand, within ABZR87_RS13410at 2840.113 kb on - strand, within ABZR87_RS13410at 2840.136 kb on + strand, within ABZR87_RS13410at 2840.227 kb on - strand, within ABZR87_RS13410at 2840.298 kb on + strand, within ABZR87_RS13410at 2840.298 kb on + strand, within ABZR87_RS13410at 2840.298 kb on + strand, within ABZR87_RS13410at 2840.299 kb on - strand, within ABZR87_RS13410at 2840.299 kb on - strand, within ABZR87_RS13410at 2840.347 kb on - strand, within ABZR87_RS13410at 2840.402 kb on - strandat 2840.429 kb on + strandat 2840.429 kb on + strandat 2840.472 kb on - strandat 2840.472 kb on - strandat 2840.502 kb on + strandat 2840.502 kb on + strandat 2840.885 kb on + strand, within ABZR87_RS13415at 2840.886 kb on - strand, within ABZR87_RS13415at 2840.886 kb on - strand, within ABZR87_RS13415at 2840.886 kb on - strand, within ABZR87_RS13415at 2841.012 kb on + strand, within ABZR87_RS13415at 2841.013 kb on - strand, within ABZR87_RS13415at 2841.035 kb on + strand, within ABZR87_RS13415at 2841.035 kb on + strand, within ABZR87_RS13415at 2841.050 kb on + strand, within ABZR87_RS13415at 2841.051 kb on - strand, within ABZR87_RS13415at 2841.167 kb on + strand, within ABZR87_RS13415at 2841.263 kb on + strand, within ABZR87_RS13415at 2841.264 kb on - strand, within ABZR87_RS13415at 2841.264 kb on - strand, within ABZR87_RS13415at 2841.320 kb on + strand, within ABZR87_RS13415at 2841.320 kb on + strand, within ABZR87_RS13415at 2841.320 kb on + strand, within ABZR87_RS13415at 2841.320 kb on + strand, within ABZR87_RS13415at 2841.320 kb on + strand, within ABZR87_RS13415at 2841.320 kb on + strand, within ABZR87_RS13415at 2841.320 kb on + strand, within ABZR87_RS13415at 2841.320 kb on + strand, within ABZR87_RS13415at 2841.320 kb on + strand, within ABZR87_RS13415at 2841.320 kb on + strand, within ABZR87_RS13415at 2841.320 kb on + strand, within ABZR87_RS13415at 2841.320 kb on + strand, within ABZR87_RS13415at 2841.320 kb on + strand, within ABZR87_RS13415at 2841.321 kb on - strand, within ABZR87_RS13415at 2841.321 kb on - strand, within ABZR87_RS13415at 2841.321 kb on - strand, within ABZR87_RS13415at 2841.321 kb on - strand, within ABZR87_RS13415at 2841.321 kb on - strand, within ABZR87_RS13415at 2841.321 kb on - strand, within ABZR87_RS13415at 2841.321 kb on - strand, within ABZR87_RS13415at 2841.321 kb on - strand, within ABZR87_RS13415at 2841.441 kb on - strandat 2841.441 kb on - strandat 2841.457 kb on + strandat 2841.457 kb on + strandat 2841.457 kb on + strandat 2841.457 kb on + strandat 2841.458 kb on - strandat 2841.458 kb on - strandat 2841.458 kb on - strandat 2841.458 kb on - strandat 2841.458 kb on - strandat 2841.458 kb on - strandat 2841.473 kb on + strandat 2841.805 kb on + strand, within ABZR87_RS13420at 2841.846 kb on + strand, within ABZR87_RS13420at 2841.846 kb on + strand, within ABZR87_RS13420at 2841.846 kb on + strand, within ABZR87_RS13420at 2841.847 kb on - strand, within ABZR87_RS13420at 2841.877 kb on + strand, within ABZR87_RS13420at 2841.877 kb on + strand, within ABZR87_RS13420at 2841.878 kb on - strand, within ABZR87_RS13420at 2841.878 kb on - strand, within ABZR87_RS13420at 2841.878 kb on - strand, within ABZR87_RS13420at 2841.878 kb on - strand, within ABZR87_RS13420at 2841.878 kb on - strand, within ABZR87_RS13420at 2841.878 kb on - strand, within ABZR87_RS13420at 2841.921 kb on + strand, within ABZR87_RS13420at 2841.922 kb on - strand, within ABZR87_RS13420at 2841.996 kb on + strand, within ABZR87_RS13420at 2841.996 kb on + strand, within ABZR87_RS13420at 2841.996 kb on + strand, within ABZR87_RS13420at 2841.997 kb on - strand, within ABZR87_RS13420at 2841.997 kb on - strand, within ABZR87_RS13420at 2841.997 kb on - strand, within ABZR87_RS13420at 2841.997 kb on - strand, within ABZR87_RS13420at 2841.997 kb on - strand, within ABZR87_RS13420at 2842.071 kb on + strand, within ABZR87_RS13420at 2842.072 kb on - strand, within ABZR87_RS13420at 2842.072 kb on - strand, within ABZR87_RS13420at 2842.072 kb on - strand, within ABZR87_RS13420at 2842.072 kb on - strand, within ABZR87_RS13420at 2842.072 kb on - strand, within ABZR87_RS13420at 2842.178 kb on - strand, within ABZR87_RS13420at 2842.188 kb on + strand, within ABZR87_RS13420at 2842.188 kb on + strand, within ABZR87_RS13420at 2842.188 kb on + strand, within ABZR87_RS13420at 2842.189 kb on - strand, within ABZR87_RS13420at 2842.207 kb on + strand, within ABZR87_RS13420

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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2,839,792 + ABZR87_RS13410 0.11 -0.7
2,839,885 + ABZR87_RS13410 0.24 +1.3
2,839,886 - ABZR87_RS13410 0.24 +1.6
2,839,886 - ABZR87_RS13410 0.24 +0.7
2,839,886 - ABZR87_RS13410 0.24 +0.5
2,839,893 + ABZR87_RS13410 0.25 -0.2
2,839,893 + ABZR87_RS13410 0.25 +0.4
2,839,893 + ABZR87_RS13410 0.25 +0.3
2,840,037 + ABZR87_RS13410 0.45 +0.8
2,840,037 + ABZR87_RS13410 0.45 -0.9
2,840,112 + ABZR87_RS13410 0.55 -0.3
2,840,112 + ABZR87_RS13410 0.55 +0.0
2,840,112 + ABZR87_RS13410 0.55 -0.4
2,840,112 + ABZR87_RS13410 0.55 +0.0
2,840,112 + ABZR87_RS13410 0.55 -0.3
2,840,112 + ABZR87_RS13410 0.55 +0.2
2,840,112 + ABZR87_RS13410 0.55 -0.8
2,840,113 - ABZR87_RS13410 0.55 +0.1
2,840,136 + ABZR87_RS13410 0.58 -0.2
2,840,227 - ABZR87_RS13410 0.71 +0.1
2,840,298 + ABZR87_RS13410 0.81 -1.0
2,840,298 + ABZR87_RS13410 0.81 +0.3
2,840,298 + ABZR87_RS13410 0.81 -0.4
2,840,299 - ABZR87_RS13410 0.81 -0.7
2,840,299 - ABZR87_RS13410 0.81 -0.6
2,840,347 - ABZR87_RS13410 0.87 +0.1
2,840,402 - -0.7
2,840,429 + +0.4
2,840,429 + -1.6
2,840,472 - +1.0
2,840,472 - -0.1
2,840,502 + -0.5
2,840,502 + -0.1
2,840,885 + ABZR87_RS13415 0.26 -1.5
2,840,886 - ABZR87_RS13415 0.26 -0.5
2,840,886 - ABZR87_RS13415 0.26 -0.5
2,840,886 - ABZR87_RS13415 0.26 -1.0
2,841,012 + ABZR87_RS13415 0.42 -1.7
2,841,013 - ABZR87_RS13415 0.42 -0.4
2,841,035 + ABZR87_RS13415 0.45 -0.7
2,841,035 + ABZR87_RS13415 0.45 -0.1
2,841,050 + ABZR87_RS13415 0.47 -0.5
2,841,051 - ABZR87_RS13415 0.47 -1.4
2,841,167 + ABZR87_RS13415 0.61 -2.5
2,841,263 + ABZR87_RS13415 0.73 +0.9
2,841,264 - ABZR87_RS13415 0.73 +1.4
2,841,264 - ABZR87_RS13415 0.73 -2.2
2,841,320 + ABZR87_RS13415 0.80 -1.0
2,841,320 + ABZR87_RS13415 0.80 -1.7
2,841,320 + ABZR87_RS13415 0.80 -1.3
2,841,320 + ABZR87_RS13415 0.80 -2.5
2,841,320 + ABZR87_RS13415 0.80 -0.5
2,841,320 + ABZR87_RS13415 0.80 +0.4
2,841,320 + ABZR87_RS13415 0.80 -1.2
2,841,320 + ABZR87_RS13415 0.80 +0.6
2,841,320 + ABZR87_RS13415 0.80 +0.1
2,841,320 + ABZR87_RS13415 0.80 -0.2
2,841,320 + ABZR87_RS13415 0.80 -1.2
2,841,320 + ABZR87_RS13415 0.80 -1.8
2,841,320 + ABZR87_RS13415 0.80 -2.2
2,841,321 - ABZR87_RS13415 0.81 -2.1
2,841,321 - ABZR87_RS13415 0.81 -0.4
2,841,321 - ABZR87_RS13415 0.81 +0.0
2,841,321 - ABZR87_RS13415 0.81 -0.7
2,841,321 - ABZR87_RS13415 0.81 -1.9
2,841,321 - ABZR87_RS13415 0.81 -0.7
2,841,321 - ABZR87_RS13415 0.81 -1.1
2,841,321 - ABZR87_RS13415 0.81 +0.4
2,841,441 - -0.8
2,841,441 - +0.8
2,841,457 + -0.5
2,841,457 + -0.5
2,841,457 + -1.0
2,841,457 + -0.2
2,841,458 - -0.9
2,841,458 - +0.3
2,841,458 - +0.4
2,841,458 - -1.2
2,841,458 - -0.9
2,841,458 - -0.7
2,841,473 + -0.9
2,841,805 + ABZR87_RS13420 0.22 +0.6
2,841,846 + ABZR87_RS13420 0.26 +0.3
2,841,846 + ABZR87_RS13420 0.26 +0.2
2,841,846 + ABZR87_RS13420 0.26 +0.3
2,841,847 - ABZR87_RS13420 0.26 +0.0
2,841,877 + ABZR87_RS13420 0.28 +0.5
2,841,877 + ABZR87_RS13420 0.28 -0.1
2,841,878 - ABZR87_RS13420 0.28 -0.5
2,841,878 - ABZR87_RS13420 0.28 +0.3
2,841,878 - ABZR87_RS13420 0.28 +0.2
2,841,878 - ABZR87_RS13420 0.28 +0.1
2,841,878 - ABZR87_RS13420 0.28 -0.2
2,841,878 - ABZR87_RS13420 0.28 +1.0
2,841,921 + ABZR87_RS13420 0.32 +0.5
2,841,922 - ABZR87_RS13420 0.32 -0.0
2,841,996 + ABZR87_RS13420 0.38 +0.5
2,841,996 + ABZR87_RS13420 0.38 -0.0
2,841,996 + ABZR87_RS13420 0.38 +0.0
2,841,997 - ABZR87_RS13420 0.38 +0.1
2,841,997 - ABZR87_RS13420 0.38 -0.6
2,841,997 - ABZR87_RS13420 0.38 -0.8
2,841,997 - ABZR87_RS13420 0.38 +0.1
2,841,997 - ABZR87_RS13420 0.38 +0.6
2,842,071 + ABZR87_RS13420 0.44 -0.3
2,842,072 - ABZR87_RS13420 0.45 +0.3
2,842,072 - ABZR87_RS13420 0.45 -1.2
2,842,072 - ABZR87_RS13420 0.45 +0.8
2,842,072 - ABZR87_RS13420 0.45 +0.2
2,842,072 - ABZR87_RS13420 0.45 +0.2
2,842,178 - ABZR87_RS13420 0.53 +0.2
2,842,188 + ABZR87_RS13420 0.54 -0.5
2,842,188 + ABZR87_RS13420 0.54 -0.3
2,842,188 + ABZR87_RS13420 0.54 +0.9
2,842,189 - ABZR87_RS13420 0.54 +0.0
2,842,207 + ABZR87_RS13420 0.56 -0.3

Or see this region's nucleotide sequence