Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11925

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11920 and ABZR87_RS11925 are separated by 230 nucleotidesABZR87_RS11925 and ABZR87_RS11930 are separated by 177 nucleotidesABZR87_RS11930 and ABZR87_RS11935 are separated by 49 nucleotides ABZR87_RS11920: ABZR87_RS11920 - pyruvate, water dikinase regulatory protein, at 2,531,812 to 2,532,663 _RS11920 ABZR87_RS11925: ABZR87_RS11925 - phosphoenolpyruvate synthase, at 2,532,894 to 2,535,281 _RS11925 ABZR87_RS11930: ABZR87_RS11930 - NfeD family protein, at 2,535,459 to 2,535,884 _RS11930 ABZR87_RS11935: ABZR87_RS11935 - SPFH domain-containing protein, at 2,535,934 to 2,536,860 _RS11935 Position (kb) 2532 2533 2534 2535 2536Strain fitness (log2 ratio) -3 -2 -1 0 1at 2532.367 kb on - strand, within ABZR87_RS11920at 2532.717 kb on + strandat 2532.717 kb on + strandat 2532.717 kb on + strandat 2532.717 kb on + strandat 2532.718 kb on - strandat 2532.722 kb on + strandat 2532.722 kb on + strandat 2532.736 kb on + strandat 2532.737 kb on - strandat 2532.740 kb on + strandat 2532.740 kb on + strandat 2532.741 kb on - strandat 2532.810 kb on + strandat 2532.810 kb on + strandat 2532.810 kb on + strandat 2532.810 kb on + strandat 2532.811 kb on - strandat 2532.826 kb on - strandat 2532.878 kb on + strandat 2532.878 kb on + strandat 2532.878 kb on + strandat 2532.878 kb on + strandat 2532.879 kb on - strandat 2532.884 kb on - strandat 2532.893 kb on + strandat 2532.893 kb on + strandat 2532.893 kb on + strandat 2532.893 kb on + strandat 2532.893 kb on + strandat 2532.893 kb on + strandat 2532.893 kb on + strandat 2532.893 kb on + strandat 2532.893 kb on + strandat 2532.894 kb on - strandat 2532.894 kb on - strandat 2532.894 kb on - strandat 2532.894 kb on - strandat 2532.894 kb on - strandat 2532.894 kb on - strandat 2532.894 kb on - strandat 2532.894 kb on - strandat 2532.894 kb on - strandat 2532.899 kb on + strandat 2532.899 kb on + strandat 2532.921 kb on + strandat 2532.921 kb on + strandat 2532.921 kb on + strandat 2532.921 kb on + strandat 2532.922 kb on - strandat 2532.922 kb on - strandat 2532.922 kb on - strandat 2532.922 kb on - strandat 2532.922 kb on - strandat 2533.230 kb on + strand, within ABZR87_RS11925at 2533.230 kb on + strand, within ABZR87_RS11925at 2533.231 kb on - strand, within ABZR87_RS11925at 2533.231 kb on - strand, within ABZR87_RS11925at 2533.231 kb on - strand, within ABZR87_RS11925at 2533.338 kb on + strand, within ABZR87_RS11925at 2533.339 kb on - strand, within ABZR87_RS11925at 2533.339 kb on - strand, within ABZR87_RS11925at 2533.339 kb on - strand, within ABZR87_RS11925at 2533.401 kb on + strand, within ABZR87_RS11925at 2533.401 kb on + strand, within ABZR87_RS11925at 2533.402 kb on - strand, within ABZR87_RS11925at 2533.572 kb on + strand, within ABZR87_RS11925at 2533.572 kb on + strand, within ABZR87_RS11925at 2533.623 kb on + strand, within ABZR87_RS11925at 2533.623 kb on + strand, within ABZR87_RS11925at 2533.623 kb on + strand, within ABZR87_RS11925at 2533.623 kb on + strand, within ABZR87_RS11925at 2533.624 kb on - strand, within ABZR87_RS11925at 2533.656 kb on + strand, within ABZR87_RS11925at 2533.656 kb on + strand, within ABZR87_RS11925at 2533.656 kb on + strand, within ABZR87_RS11925at 2533.656 kb on + strand, within ABZR87_RS11925at 2533.809 kb on + strand, within ABZR87_RS11925at 2533.810 kb on - strand, within ABZR87_RS11925at 2533.834 kb on - strand, within ABZR87_RS11925at 2533.834 kb on - strand, within ABZR87_RS11925at 2533.887 kb on + strand, within ABZR87_RS11925at 2533.887 kb on + strand, within ABZR87_RS11925at 2533.888 kb on - strand, within ABZR87_RS11925at 2533.888 kb on - strand, within ABZR87_RS11925at 2533.888 kb on - strand, within ABZR87_RS11925at 2533.888 kb on - strand, within ABZR87_RS11925at 2533.888 kb on - strand, within ABZR87_RS11925at 2533.888 kb on - strand, within ABZR87_RS11925at 2533.888 kb on - strand, within ABZR87_RS11925at 2533.888 kb on - strand, within ABZR87_RS11925at 2533.888 kb on - strand, within ABZR87_RS11925at 2533.888 kb on - strand, within ABZR87_RS11925at 2534.156 kb on + strand, within ABZR87_RS11925at 2534.156 kb on + strand, within ABZR87_RS11925at 2534.289 kb on + strand, within ABZR87_RS11925at 2534.289 kb on + strand, within ABZR87_RS11925at 2534.289 kb on + strand, within ABZR87_RS11925at 2534.290 kb on - strand, within ABZR87_RS11925at 2534.290 kb on - strand, within ABZR87_RS11925at 2534.290 kb on - strand, within ABZR87_RS11925at 2534.290 kb on - strand, within ABZR87_RS11925at 2534.565 kb on + strand, within ABZR87_RS11925at 2534.565 kb on + strand, within ABZR87_RS11925at 2534.565 kb on + strand, within ABZR87_RS11925at 2534.566 kb on - strand, within ABZR87_RS11925at 2534.566 kb on - strand, within ABZR87_RS11925at 2534.594 kb on + strand, within ABZR87_RS11925at 2534.595 kb on - strand, within ABZR87_RS11925at 2534.614 kb on - strand, within ABZR87_RS11925at 2534.661 kb on + strand, within ABZR87_RS11925at 2534.661 kb on + strand, within ABZR87_RS11925at 2534.662 kb on - strand, within ABZR87_RS11925at 2534.740 kb on - strand, within ABZR87_RS11925at 2534.740 kb on - strand, within ABZR87_RS11925at 2534.849 kb on + strand, within ABZR87_RS11925at 2534.849 kb on + strand, within ABZR87_RS11925at 2534.849 kb on + strand, within ABZR87_RS11925at 2534.850 kb on - strand, within ABZR87_RS11925at 2534.850 kb on - strand, within ABZR87_RS11925at 2534.892 kb on + strand, within ABZR87_RS11925at 2534.982 kb on + strand, within ABZR87_RS11925at 2534.982 kb on + strand, within ABZR87_RS11925at 2534.983 kb on - strand, within ABZR87_RS11925at 2534.983 kb on - strand, within ABZR87_RS11925at 2535.147 kb on + strandat 2535.147 kb on + strandat 2535.148 kb on - strandat 2535.148 kb on - strandat 2535.148 kb on - strandat 2535.148 kb on - strandat 2535.291 kb on - strandat 2535.312 kb on + strandat 2535.312 kb on + strandat 2535.312 kb on + strandat 2535.458 kb on + strandat 2535.458 kb on + strandat 2535.458 kb on + strandat 2535.458 kb on + strandat 2535.459 kb on - strandat 2535.459 kb on - strandat 2535.459 kb on - strandat 2535.531 kb on + strand, within ABZR87_RS11930at 2535.531 kb on + strand, within ABZR87_RS11930at 2535.531 kb on + strand, within ABZR87_RS11930at 2535.532 kb on - strand, within ABZR87_RS11930at 2535.532 kb on - strand, within ABZR87_RS11930at 2535.532 kb on - strand, within ABZR87_RS11930at 2535.532 kb on - strand, within ABZR87_RS11930at 2535.532 kb on - strand, within ABZR87_RS11930at 2535.883 kb on - strandat 2535.912 kb on + strandat 2535.912 kb on + strandat 2535.912 kb on + strandat 2535.912 kb on + strandat 2535.913 kb on - strandat 2535.913 kb on - strandat 2535.913 kb on - strandat 2535.913 kb on - strandat 2535.913 kb on - strandat 2535.913 kb on - strandat 2535.913 kb on - strandat 2535.913 kb on - strandat 2535.933 kb on + strandat 2535.933 kb on + strandat 2535.933 kb on + strandat 2535.933 kb on + strandat 2535.933 kb on + strandat 2535.934 kb on - strandat 2535.934 kb on - strandat 2535.934 kb on - strandat 2535.934 kb on - strandat 2535.934 kb on - strandat 2535.934 kb on - strandat 2535.934 kb on - strandat 2535.934 kb on - strandat 2535.934 kb on - strandat 2536.051 kb on + strand, within ABZR87_RS11935at 2536.052 kb on - strand, within ABZR87_RS11935at 2536.052 kb on - strand, within ABZR87_RS11935at 2536.111 kb on + strand, within ABZR87_RS11935at 2536.111 kb on + strand, within ABZR87_RS11935at 2536.111 kb on + strand, within ABZR87_RS11935at 2536.111 kb on + strand, within ABZR87_RS11935at 2536.111 kb on + strand, within ABZR87_RS11935at 2536.111 kb on + strand, within ABZR87_RS11935at 2536.161 kb on + strand, within ABZR87_RS11935at 2536.161 kb on + strand, within ABZR87_RS11935at 2536.161 kb on + strand, within ABZR87_RS11935at 2536.161 kb on + strand, within ABZR87_RS11935at 2536.162 kb on - strand, within ABZR87_RS11935at 2536.162 kb on - strand, within ABZR87_RS11935at 2536.162 kb on - strand, within ABZR87_RS11935at 2536.204 kb on + strand, within ABZR87_RS11935at 2536.205 kb on - strand, within ABZR87_RS11935at 2536.205 kb on - strand, within ABZR87_RS11935at 2536.205 kb on - strand, within ABZR87_RS11935at 2536.237 kb on + strand, within ABZR87_RS11935at 2536.237 kb on + strand, within ABZR87_RS11935at 2536.238 kb on - strand, within ABZR87_RS11935at 2536.238 kb on - strand, within ABZR87_RS11935

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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2,532,367 - ABZR87_RS11920 0.65 -0.7
2,532,717 + -0.1
2,532,717 + -0.2
2,532,717 + +0.0
2,532,717 + +0.4
2,532,718 - -0.6
2,532,722 + +0.4
2,532,722 + +0.6
2,532,736 + -0.8
2,532,737 - -0.6
2,532,740 + -0.9
2,532,740 + +0.2
2,532,741 - +0.6
2,532,810 + -0.5
2,532,810 + -0.2
2,532,810 + +0.3
2,532,810 + -1.0
2,532,811 - -0.3
2,532,826 - -1.8
2,532,878 + -0.2
2,532,878 + +0.1
2,532,878 + -0.6
2,532,878 + -0.6
2,532,879 - -1.4
2,532,884 - -1.0
2,532,893 + -0.1
2,532,893 + -0.4
2,532,893 + -0.3
2,532,893 + -0.9
2,532,893 + -0.4
2,532,893 + -0.5
2,532,893 + -1.6
2,532,893 + +0.0
2,532,893 + -0.1
2,532,894 - -0.3
2,532,894 - -1.1
2,532,894 - -0.7
2,532,894 - -1.6
2,532,894 - +0.4
2,532,894 - -0.4
2,532,894 - -1.4
2,532,894 - -0.5
2,532,894 - -3.0
2,532,899 + -1.2
2,532,899 + -0.3
2,532,921 + -0.3
2,532,921 + -1.4
2,532,921 + -0.5
2,532,921 + +0.2
2,532,922 - +0.1
2,532,922 - -0.1
2,532,922 - -1.2
2,532,922 - -1.0
2,532,922 - -0.7
2,533,230 + ABZR87_RS11925 0.14 -0.4
2,533,230 + ABZR87_RS11925 0.14 -1.2
2,533,231 - ABZR87_RS11925 0.14 -0.9
2,533,231 - ABZR87_RS11925 0.14 -2.2
2,533,231 - ABZR87_RS11925 0.14 -0.1
2,533,338 + ABZR87_RS11925 0.19 -1.5
2,533,339 - ABZR87_RS11925 0.19 -2.1
2,533,339 - ABZR87_RS11925 0.19 -0.3
2,533,339 - ABZR87_RS11925 0.19 -0.3
2,533,401 + ABZR87_RS11925 0.21 +0.3
2,533,401 + ABZR87_RS11925 0.21 -0.8
2,533,402 - ABZR87_RS11925 0.21 -0.0
2,533,572 + ABZR87_RS11925 0.28 -0.3
2,533,572 + ABZR87_RS11925 0.28 -0.3
2,533,623 + ABZR87_RS11925 0.31 -1.2
2,533,623 + ABZR87_RS11925 0.31 -0.7
2,533,623 + ABZR87_RS11925 0.31 -1.7
2,533,623 + ABZR87_RS11925 0.31 +0.9
2,533,624 - ABZR87_RS11925 0.31 -1.3
2,533,656 + ABZR87_RS11925 0.32 -0.4
2,533,656 + ABZR87_RS11925 0.32 +0.7
2,533,656 + ABZR87_RS11925 0.32 +0.5
2,533,656 + ABZR87_RS11925 0.32 -2.2
2,533,809 + ABZR87_RS11925 0.38 -0.8
2,533,810 - ABZR87_RS11925 0.38 -1.2
2,533,834 - ABZR87_RS11925 0.39 -1.6
2,533,834 - ABZR87_RS11925 0.39 -0.4
2,533,887 + ABZR87_RS11925 0.42 -0.9
2,533,887 + ABZR87_RS11925 0.42 -0.2
2,533,888 - ABZR87_RS11925 0.42 +0.7
2,533,888 - ABZR87_RS11925 0.42 -0.2
2,533,888 - ABZR87_RS11925 0.42 -3.2
2,533,888 - ABZR87_RS11925 0.42 -1.2
2,533,888 - ABZR87_RS11925 0.42 -0.8
2,533,888 - ABZR87_RS11925 0.42 -2.4
2,533,888 - ABZR87_RS11925 0.42 -1.0
2,533,888 - ABZR87_RS11925 0.42 -3.3
2,533,888 - ABZR87_RS11925 0.42 -0.5
2,533,888 - ABZR87_RS11925 0.42 -1.8
2,534,156 + ABZR87_RS11925 0.53 +0.8
2,534,156 + ABZR87_RS11925 0.53 -1.9
2,534,289 + ABZR87_RS11925 0.58 +0.1
2,534,289 + ABZR87_RS11925 0.58 -1.0
2,534,289 + ABZR87_RS11925 0.58 -1.9
2,534,290 - ABZR87_RS11925 0.58 -0.7
2,534,290 - ABZR87_RS11925 0.58 -0.0
2,534,290 - ABZR87_RS11925 0.58 -1.9
2,534,290 - ABZR87_RS11925 0.58 -0.3
2,534,565 + ABZR87_RS11925 0.70 -2.0
2,534,565 + ABZR87_RS11925 0.70 -2.1
2,534,565 + ABZR87_RS11925 0.70 -0.8
2,534,566 - ABZR87_RS11925 0.70 -1.4
2,534,566 - ABZR87_RS11925 0.70 -2.2
2,534,594 + ABZR87_RS11925 0.71 -1.8
2,534,595 - ABZR87_RS11925 0.71 -1.3
2,534,614 - ABZR87_RS11925 0.72 -1.7
2,534,661 + ABZR87_RS11925 0.74 -1.1
2,534,661 + ABZR87_RS11925 0.74 -1.2
2,534,662 - ABZR87_RS11925 0.74 -0.3
2,534,740 - ABZR87_RS11925 0.77 -0.4
2,534,740 - ABZR87_RS11925 0.77 -2.8
2,534,849 + ABZR87_RS11925 0.82 -1.1
2,534,849 + ABZR87_RS11925 0.82 -0.4
2,534,849 + ABZR87_RS11925 0.82 +0.2
2,534,850 - ABZR87_RS11925 0.82 +0.1
2,534,850 - ABZR87_RS11925 0.82 -0.7
2,534,892 + ABZR87_RS11925 0.84 -1.4
2,534,982 + ABZR87_RS11925 0.87 -2.4
2,534,982 + ABZR87_RS11925 0.87 -1.0
2,534,983 - ABZR87_RS11925 0.87 -2.3
2,534,983 - ABZR87_RS11925 0.87 -1.5
2,535,147 + -0.9
2,535,147 + +0.1
2,535,148 - -2.8
2,535,148 - -1.3
2,535,148 - -1.2
2,535,148 - -1.9
2,535,291 - -1.4
2,535,312 + -0.4
2,535,312 + +1.6
2,535,312 + -0.6
2,535,458 + -0.4
2,535,458 + -0.6
2,535,458 + +0.6
2,535,458 + +0.1
2,535,459 - -0.5
2,535,459 - -1.5
2,535,459 - -0.1
2,535,531 + ABZR87_RS11930 0.17 +0.5
2,535,531 + ABZR87_RS11930 0.17 -0.5
2,535,531 + ABZR87_RS11930 0.17 +0.6
2,535,532 - ABZR87_RS11930 0.17 -0.5
2,535,532 - ABZR87_RS11930 0.17 -0.1
2,535,532 - ABZR87_RS11930 0.17 +0.0
2,535,532 - ABZR87_RS11930 0.17 +0.4
2,535,532 - ABZR87_RS11930 0.17 +0.0
2,535,883 - -0.1
2,535,912 + -1.2
2,535,912 + -0.4
2,535,912 + +0.4
2,535,912 + -0.2
2,535,913 - -0.4
2,535,913 - +0.6
2,535,913 - -0.2
2,535,913 - +0.4
2,535,913 - -0.8
2,535,913 - +0.8
2,535,913 - -0.0
2,535,913 - -0.5
2,535,933 + +0.2
2,535,933 + -0.1
2,535,933 + +0.1
2,535,933 + +0.2
2,535,933 + -0.4
2,535,934 - -0.2
2,535,934 - -0.6
2,535,934 - -0.9
2,535,934 - +0.1
2,535,934 - -0.2
2,535,934 - -0.4
2,535,934 - -0.8
2,535,934 - +0.2
2,535,934 - +0.7
2,536,051 + ABZR87_RS11935 0.13 +0.3
2,536,052 - ABZR87_RS11935 0.13 -0.3
2,536,052 - ABZR87_RS11935 0.13 -0.6
2,536,111 + ABZR87_RS11935 0.19 -0.2
2,536,111 + ABZR87_RS11935 0.19 -0.1
2,536,111 + ABZR87_RS11935 0.19 -0.8
2,536,111 + ABZR87_RS11935 0.19 -0.2
2,536,111 + ABZR87_RS11935 0.19 -0.7
2,536,111 + ABZR87_RS11935 0.19 +0.3
2,536,161 + ABZR87_RS11935 0.24 +0.2
2,536,161 + ABZR87_RS11935 0.24 +0.1
2,536,161 + ABZR87_RS11935 0.24 -0.3
2,536,161 + ABZR87_RS11935 0.24 -0.8
2,536,162 - ABZR87_RS11935 0.25 -0.3
2,536,162 - ABZR87_RS11935 0.25 +0.1
2,536,162 - ABZR87_RS11935 0.25 +0.7
2,536,204 + ABZR87_RS11935 0.29 +0.3
2,536,205 - ABZR87_RS11935 0.29 +0.7
2,536,205 - ABZR87_RS11935 0.29 -0.4
2,536,205 - ABZR87_RS11935 0.29 +0.0
2,536,237 + ABZR87_RS11935 0.33 -0.2
2,536,237 + ABZR87_RS11935 0.33 +0.4
2,536,238 - ABZR87_RS11935 0.33 -0.2
2,536,238 - ABZR87_RS11935 0.33 -0.2

Or see this region's nucleotide sequence