Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10530

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS10520 and ABZR87_RS10525 are separated by 13 nucleotidesABZR87_RS10525 and ABZR87_RS10530 are separated by 66 nucleotidesABZR87_RS10530 and ABZR87_RS10535 are separated by 21 nucleotides ABZR87_RS10520: ABZR87_RS10520 - 3',5'-nucleoside bisphosphate phosphatase, at 2,226,642 to 2,227,502 _RS10520 ABZR87_RS10525: ABZR87_RS10525 - L-threonylcarbamoyladenylate synthase, at 2,227,516 to 2,228,139 _RS10525 ABZR87_RS10530: ABZR87_RS10530 - site-2 protease family protein, at 2,228,206 to 2,228,871 _RS10530 ABZR87_RS10535: ABZR87_RS10535 - tryptophan--tRNA ligase, at 2,228,893 to 2,230,095 _RS10535 Position (kb) 2228 2229Strain fitness (log2 ratio) -3 -2 -1 0 1at 2227.256 kb on - strand, within ABZR87_RS10520at 2227.337 kb on + strand, within ABZR87_RS10520at 2227.337 kb on + strand, within ABZR87_RS10520at 2227.338 kb on - strand, within ABZR87_RS10520at 2227.338 kb on - strand, within ABZR87_RS10520at 2227.338 kb on - strand, within ABZR87_RS10520at 2227.350 kb on + strand, within ABZR87_RS10520at 2227.350 kb on + strand, within ABZR87_RS10520at 2227.351 kb on - strand, within ABZR87_RS10520at 2227.359 kb on + strand, within ABZR87_RS10520at 2227.360 kb on - strand, within ABZR87_RS10520at 2227.360 kb on - strand, within ABZR87_RS10520at 2227.360 kb on - strand, within ABZR87_RS10520at 2228.059 kb on - strand, within ABZR87_RS10525at 2228.059 kb on - strand, within ABZR87_RS10525at 2228.137 kb on + strandat 2228.137 kb on + strandat 2228.137 kb on + strandat 2228.138 kb on - strandat 2228.138 kb on - strandat 2228.160 kb on + strandat 2228.191 kb on + strandat 2228.191 kb on + strandat 2228.192 kb on - strandat 2228.192 kb on - strandat 2228.192 kb on - strandat 2228.192 kb on - strandat 2228.192 kb on - strandat 2228.196 kb on + strandat 2228.323 kb on + strand, within ABZR87_RS10530at 2228.323 kb on + strand, within ABZR87_RS10530at 2228.401 kb on + strand, within ABZR87_RS10530at 2228.401 kb on + strand, within ABZR87_RS10530at 2228.628 kb on + strand, within ABZR87_RS10530at 2228.628 kb on + strand, within ABZR87_RS10530at 2228.628 kb on + strand, within ABZR87_RS10530at 2228.732 kb on + strand, within ABZR87_RS10530at 2228.732 kb on + strand, within ABZR87_RS10530at 2228.732 kb on + strand, within ABZR87_RS10530at 2228.732 kb on + strand, within ABZR87_RS10530at 2228.732 kb on + strand, within ABZR87_RS10530at 2228.732 kb on + strand, within ABZR87_RS10530at 2228.784 kb on + strand, within ABZR87_RS10530

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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2,227,256 - ABZR87_RS10520 0.71 +0.7
2,227,337 + ABZR87_RS10520 0.81 -0.4
2,227,337 + ABZR87_RS10520 0.81 +0.4
2,227,338 - ABZR87_RS10520 0.81 +0.0
2,227,338 - ABZR87_RS10520 0.81 -1.8
2,227,338 - ABZR87_RS10520 0.81 -0.1
2,227,350 + ABZR87_RS10520 0.82 -0.7
2,227,350 + ABZR87_RS10520 0.82 -2.7
2,227,351 - ABZR87_RS10520 0.82 -0.7
2,227,359 + ABZR87_RS10520 0.83 +0.3
2,227,360 - ABZR87_RS10520 0.83 +0.5
2,227,360 - ABZR87_RS10520 0.83 -0.6
2,227,360 - ABZR87_RS10520 0.83 -1.5
2,228,059 - ABZR87_RS10525 0.87 -0.6
2,228,059 - ABZR87_RS10525 0.87 -3.3
2,228,137 + +0.8
2,228,137 + +0.4
2,228,137 + +0.7
2,228,138 - +0.1
2,228,138 - +0.3
2,228,160 + +0.3
2,228,191 + +0.4
2,228,191 + +0.8
2,228,192 - +0.2
2,228,192 - -0.4
2,228,192 - +0.5
2,228,192 - -1.0
2,228,192 - -0.6
2,228,196 + +0.8
2,228,323 + ABZR87_RS10530 0.18 -0.2
2,228,323 + ABZR87_RS10530 0.18 -0.5
2,228,401 + ABZR87_RS10530 0.29 -0.0
2,228,401 + ABZR87_RS10530 0.29 +0.1
2,228,628 + ABZR87_RS10530 0.63 -0.7
2,228,628 + ABZR87_RS10530 0.63 +0.5
2,228,628 + ABZR87_RS10530 0.63 -0.1
2,228,732 + ABZR87_RS10530 0.79 -0.1
2,228,732 + ABZR87_RS10530 0.79 -0.6
2,228,732 + ABZR87_RS10530 0.79 -0.0
2,228,732 + ABZR87_RS10530 0.79 -0.5
2,228,732 + ABZR87_RS10530 0.79 +0.5
2,228,732 + ABZR87_RS10530 0.79 +0.5
2,228,784 + ABZR87_RS10530 0.87 -0.3

Or see this region's nucleotide sequence