Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09820

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS09815 and ABZR87_RS09820 are separated by 131 nucleotidesABZR87_RS09820 and ABZR87_RS09825 are separated by 45 nucleotidesABZR87_RS09825 and ABZR87_RS09830 are separated by 9 nucleotides ABZR87_RS09815: ABZR87_RS09815 - PLP-dependent aminotransferase family protein, at 2,086,065 to 2,087,255 _RS09815 ABZR87_RS09820: ABZR87_RS09820 - RidA family protein, at 2,087,387 to 2,087,857 _RS09820 ABZR87_RS09825: ABZR87_RS09825 - DMT family transporter, at 2,087,903 to 2,088,841 _RS09825 ABZR87_RS09830: ABZR87_RS09830 - alanyl-tRNA editing protein, at 2,088,851 to 2,089,570 _RS09830 Position (kb) 2087 2088Strain fitness (log2 ratio) -2 -1 0 1 2at 2086.441 kb on + strand, within ABZR87_RS09815at 2086.514 kb on + strand, within ABZR87_RS09815at 2086.514 kb on + strand, within ABZR87_RS09815at 2086.515 kb on - strand, within ABZR87_RS09815at 2086.515 kb on - strand, within ABZR87_RS09815at 2086.535 kb on - strand, within ABZR87_RS09815at 2086.582 kb on + strand, within ABZR87_RS09815at 2086.582 kb on + strand, within ABZR87_RS09815at 2086.582 kb on + strand, within ABZR87_RS09815at 2086.582 kb on + strand, within ABZR87_RS09815at 2086.583 kb on - strand, within ABZR87_RS09815at 2086.583 kb on - strand, within ABZR87_RS09815at 2086.583 kb on - strand, within ABZR87_RS09815at 2086.636 kb on + strand, within ABZR87_RS09815at 2086.637 kb on - strand, within ABZR87_RS09815at 2086.766 kb on - strand, within ABZR87_RS09815at 2086.766 kb on - strand, within ABZR87_RS09815at 2086.844 kb on + strand, within ABZR87_RS09815at 2086.844 kb on + strand, within ABZR87_RS09815at 2086.844 kb on + strand, within ABZR87_RS09815at 2086.844 kb on + strand, within ABZR87_RS09815at 2086.844 kb on + strand, within ABZR87_RS09815at 2086.845 kb on - strand, within ABZR87_RS09815at 2086.845 kb on - strand, within ABZR87_RS09815at 2086.845 kb on - strand, within ABZR87_RS09815at 2086.845 kb on - strand, within ABZR87_RS09815at 2086.845 kb on - strand, within ABZR87_RS09815at 2086.845 kb on - strand, within ABZR87_RS09815at 2086.846 kb on + strand, within ABZR87_RS09815at 2086.847 kb on - strand, within ABZR87_RS09815at 2086.847 kb on - strand, within ABZR87_RS09815at 2086.847 kb on - strand, within ABZR87_RS09815at 2086.888 kb on + strand, within ABZR87_RS09815at 2086.888 kb on + strand, within ABZR87_RS09815at 2086.888 kb on + strand, within ABZR87_RS09815at 2086.889 kb on - strand, within ABZR87_RS09815at 2087.053 kb on + strand, within ABZR87_RS09815at 2087.053 kb on + strand, within ABZR87_RS09815at 2087.053 kb on + strand, within ABZR87_RS09815at 2087.054 kb on - strand, within ABZR87_RS09815at 2087.237 kb on + strandat 2087.238 kb on - strandat 2087.238 kb on - strandat 2087.238 kb on - strandat 2087.238 kb on - strandat 2087.266 kb on + strandat 2087.266 kb on + strandat 2087.267 kb on - strandat 2087.267 kb on - strandat 2087.323 kb on + strandat 2087.343 kb on + strandat 2087.343 kb on + strandat 2087.343 kb on + strandat 2087.775 kb on + strand, within ABZR87_RS09820at 2087.775 kb on + strand, within ABZR87_RS09820at 2087.776 kb on - strand, within ABZR87_RS09820at 2087.776 kb on - strand, within ABZR87_RS09820at 2087.871 kb on + strandat 2087.871 kb on + strandat 2087.871 kb on + strandat 2087.871 kb on + strandat 2087.872 kb on - strandat 2087.872 kb on - strandat 2087.872 kb on - strandat 2087.905 kb on - strandat 2088.041 kb on + strand, within ABZR87_RS09825at 2088.041 kb on + strand, within ABZR87_RS09825at 2088.041 kb on + strand, within ABZR87_RS09825at 2088.042 kb on - strand, within ABZR87_RS09825at 2088.084 kb on + strand, within ABZR87_RS09825at 2088.085 kb on - strand, within ABZR87_RS09825at 2088.122 kb on + strand, within ABZR87_RS09825at 2088.122 kb on + strand, within ABZR87_RS09825at 2088.123 kb on - strand, within ABZR87_RS09825at 2088.126 kb on + strand, within ABZR87_RS09825at 2088.126 kb on + strand, within ABZR87_RS09825at 2088.126 kb on + strand, within ABZR87_RS09825at 2088.127 kb on - strand, within ABZR87_RS09825at 2088.127 kb on - strand, within ABZR87_RS09825at 2088.127 kb on - strand, within ABZR87_RS09825at 2088.127 kb on - strand, within ABZR87_RS09825at 2088.127 kb on - strand, within ABZR87_RS09825at 2088.127 kb on - strand, within ABZR87_RS09825at 2088.127 kb on - strand, within ABZR87_RS09825at 2088.127 kb on - strand, within ABZR87_RS09825at 2088.127 kb on - strand, within ABZR87_RS09825

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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2,086,441 + ABZR87_RS09815 0.32 +0.2
2,086,514 + ABZR87_RS09815 0.38 +1.0
2,086,514 + ABZR87_RS09815 0.38 +0.8
2,086,515 - ABZR87_RS09815 0.38 -1.1
2,086,515 - ABZR87_RS09815 0.38 +0.4
2,086,535 - ABZR87_RS09815 0.39 -0.0
2,086,582 + ABZR87_RS09815 0.43 -0.5
2,086,582 + ABZR87_RS09815 0.43 +2.0
2,086,582 + ABZR87_RS09815 0.43 -0.5
2,086,582 + ABZR87_RS09815 0.43 -0.2
2,086,583 - ABZR87_RS09815 0.43 +0.2
2,086,583 - ABZR87_RS09815 0.43 -0.1
2,086,583 - ABZR87_RS09815 0.43 +0.0
2,086,636 + ABZR87_RS09815 0.48 -0.1
2,086,637 - ABZR87_RS09815 0.48 -0.2
2,086,766 - ABZR87_RS09815 0.59 +0.7
2,086,766 - ABZR87_RS09815 0.59 -0.0
2,086,844 + ABZR87_RS09815 0.65 -0.5
2,086,844 + ABZR87_RS09815 0.65 +0.7
2,086,844 + ABZR87_RS09815 0.65 -0.3
2,086,844 + ABZR87_RS09815 0.65 -0.2
2,086,844 + ABZR87_RS09815 0.65 +0.2
2,086,845 - ABZR87_RS09815 0.65 +0.5
2,086,845 - ABZR87_RS09815 0.65 +0.4
2,086,845 - ABZR87_RS09815 0.65 +0.2
2,086,845 - ABZR87_RS09815 0.65 +0.1
2,086,845 - ABZR87_RS09815 0.65 +0.6
2,086,845 - ABZR87_RS09815 0.65 -0.8
2,086,846 + ABZR87_RS09815 0.66 -1.5
2,086,847 - ABZR87_RS09815 0.66 +0.6
2,086,847 - ABZR87_RS09815 0.66 +0.1
2,086,847 - ABZR87_RS09815 0.66 +0.0
2,086,888 + ABZR87_RS09815 0.69 +0.6
2,086,888 + ABZR87_RS09815 0.69 +0.2
2,086,888 + ABZR87_RS09815 0.69 -0.8
2,086,889 - ABZR87_RS09815 0.69 -0.5
2,087,053 + ABZR87_RS09815 0.83 +1.1
2,087,053 + ABZR87_RS09815 0.83 +0.3
2,087,053 + ABZR87_RS09815 0.83 -0.3
2,087,054 - ABZR87_RS09815 0.83 -1.4
2,087,237 + +0.2
2,087,238 - -0.7
2,087,238 - -0.6
2,087,238 - +1.6
2,087,238 - +0.0
2,087,266 + +1.1
2,087,266 + -0.4
2,087,267 - +0.1
2,087,267 - -0.8
2,087,323 + -0.4
2,087,343 + +0.5
2,087,343 + +0.3
2,087,343 + -1.9
2,087,775 + ABZR87_RS09820 0.82 -0.2
2,087,775 + ABZR87_RS09820 0.82 +0.0
2,087,776 - ABZR87_RS09820 0.83 -1.0
2,087,776 - ABZR87_RS09820 0.83 -1.5
2,087,871 + -0.8
2,087,871 + -0.5
2,087,871 + -0.1
2,087,871 + -0.2
2,087,872 - +0.3
2,087,872 - -1.3
2,087,872 - -1.8
2,087,905 - +0.1
2,088,041 + ABZR87_RS09825 0.15 -0.4
2,088,041 + ABZR87_RS09825 0.15 +0.5
2,088,041 + ABZR87_RS09825 0.15 -0.3
2,088,042 - ABZR87_RS09825 0.15 -0.1
2,088,084 + ABZR87_RS09825 0.19 -1.0
2,088,085 - ABZR87_RS09825 0.19 -0.7
2,088,122 + ABZR87_RS09825 0.23 -0.1
2,088,122 + ABZR87_RS09825 0.23 -0.5
2,088,123 - ABZR87_RS09825 0.23 +0.6
2,088,126 + ABZR87_RS09825 0.24 -0.6
2,088,126 + ABZR87_RS09825 0.24 -0.7
2,088,126 + ABZR87_RS09825 0.24 -0.0
2,088,127 - ABZR87_RS09825 0.24 -0.9
2,088,127 - ABZR87_RS09825 0.24 +0.6
2,088,127 - ABZR87_RS09825 0.24 +0.2
2,088,127 - ABZR87_RS09825 0.24 +0.2
2,088,127 - ABZR87_RS09825 0.24 -0.4
2,088,127 - ABZR87_RS09825 0.24 +0.6
2,088,127 - ABZR87_RS09825 0.24 +0.3
2,088,127 - ABZR87_RS09825 0.24 +0.2
2,088,127 - ABZR87_RS09825 0.24 +0.1

Or see this region's nucleotide sequence