Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08345

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08335 and ABZR87_RS08340 are separated by 69 nucleotidesABZR87_RS08340 and ABZR87_RS08345 are separated by 48 nucleotidesABZR87_RS08345 and ABZR87_RS08350 are separated by 560 nucleotides ABZR87_RS08335: ABZR87_RS08335 - MFS transporter, at 1,772,195 to 1,773,490 _RS08335 ABZR87_RS08340: ABZR87_RS08340 - substrate-binding domain-containing protein, at 1,773,560 to 1,774,342 _RS08340 ABZR87_RS08345: ABZR87_RS08345 - LysR family transcriptional regulator, at 1,774,391 to 1,775,308 _RS08345 ABZR87_RS08350: ABZR87_RS08350 - hypothetical protein, at 1,775,869 to 1,777,131 _RS08350 Position (kb) 1774 1775 1776Strain fitness (log2 ratio) -1 0 1 2at 1773.452 kb on + strandat 1773.523 kb on + strandat 1773.524 kb on - strandat 1773.529 kb on + strandat 1773.529 kb on + strandat 1773.530 kb on - strandat 1773.677 kb on + strand, within ABZR87_RS08340at 1773.678 kb on - strand, within ABZR87_RS08340at 1773.678 kb on - strand, within ABZR87_RS08340at 1773.679 kb on + strand, within ABZR87_RS08340at 1773.679 kb on + strand, within ABZR87_RS08340at 1773.679 kb on + strand, within ABZR87_RS08340at 1773.680 kb on - strand, within ABZR87_RS08340at 1773.680 kb on - strand, within ABZR87_RS08340at 1773.680 kb on - strand, within ABZR87_RS08340at 1773.768 kb on + strand, within ABZR87_RS08340at 1773.931 kb on + strand, within ABZR87_RS08340at 1774.010 kb on + strand, within ABZR87_RS08340at 1774.010 kb on + strand, within ABZR87_RS08340at 1774.010 kb on + strand, within ABZR87_RS08340at 1774.010 kb on + strand, within ABZR87_RS08340at 1774.011 kb on - strand, within ABZR87_RS08340at 1774.011 kb on - strand, within ABZR87_RS08340at 1774.084 kb on + strand, within ABZR87_RS08340at 1774.118 kb on + strand, within ABZR87_RS08340at 1774.274 kb on + strandat 1774.274 kb on + strandat 1774.275 kb on - strandat 1774.725 kb on + strand, within ABZR87_RS08345at 1774.725 kb on + strand, within ABZR87_RS08345at 1774.725 kb on + strand, within ABZR87_RS08345at 1774.726 kb on - strand, within ABZR87_RS08345at 1774.726 kb on - strand, within ABZR87_RS08345at 1774.726 kb on - strand, within ABZR87_RS08345at 1774.726 kb on - strand, within ABZR87_RS08345at 1774.726 kb on - strand, within ABZR87_RS08345at 1774.737 kb on + strand, within ABZR87_RS08345at 1774.901 kb on + strand, within ABZR87_RS08345at 1774.901 kb on + strand, within ABZR87_RS08345at 1774.901 kb on + strand, within ABZR87_RS08345at 1774.959 kb on + strand, within ABZR87_RS08345at 1774.986 kb on + strand, within ABZR87_RS08345at 1774.986 kb on + strand, within ABZR87_RS08345at 1774.987 kb on - strand, within ABZR87_RS08345at 1774.989 kb on + strand, within ABZR87_RS08345at 1774.989 kb on + strand, within ABZR87_RS08345at 1774.989 kb on + strand, within ABZR87_RS08345at 1775.352 kb on + strandat 1775.352 kb on + strandat 1775.353 kb on - strandat 1775.353 kb on - strandat 1775.353 kb on - strandat 1775.627 kb on + strandat 1775.627 kb on + strandat 1775.627 kb on + strandat 1775.628 kb on - strandat 1775.748 kb on + strandat 1775.749 kb on - strandat 1775.834 kb on + strandat 1775.834 kb on + strandat 1776.069 kb on + strand, within ABZR87_RS08350at 1776.070 kb on - strand, within ABZR87_RS08350at 1776.070 kb on - strand, within ABZR87_RS08350at 1776.070 kb on - strand, within ABZR87_RS08350at 1776.166 kb on - strand, within ABZR87_RS08350at 1776.205 kb on + strand, within ABZR87_RS08350at 1776.205 kb on + strand, within ABZR87_RS08350at 1776.205 kb on + strand, within ABZR87_RS08350at 1776.205 kb on + strand, within ABZR87_RS08350at 1776.206 kb on - strand, within ABZR87_RS08350at 1776.206 kb on - strand, within ABZR87_RS08350at 1776.206 kb on - strand, within ABZR87_RS08350at 1776.206 kb on - strand, within ABZR87_RS08350at 1776.239 kb on - strand, within ABZR87_RS08350at 1776.262 kb on + strand, within ABZR87_RS08350at 1776.262 kb on + strand, within ABZR87_RS08350at 1776.262 kb on + strand, within ABZR87_RS08350at 1776.262 kb on + strand, within ABZR87_RS08350at 1776.262 kb on + strand, within ABZR87_RS08350at 1776.262 kb on + strand, within ABZR87_RS08350at 1776.263 kb on - strand, within ABZR87_RS08350at 1776.263 kb on - strand, within ABZR87_RS08350at 1776.263 kb on - strand, within ABZR87_RS08350at 1776.271 kb on + strand, within ABZR87_RS08350at 1776.271 kb on + strand, within ABZR87_RS08350at 1776.271 kb on + strand, within ABZR87_RS08350at 1776.272 kb on - strand, within ABZR87_RS08350at 1776.272 kb on - strand, within ABZR87_RS08350at 1776.272 kb on - strand, within ABZR87_RS08350at 1776.272 kb on - strand, within ABZR87_RS08350at 1776.296 kb on - strand, within ABZR87_RS08350at 1776.296 kb on - strand, within ABZR87_RS08350at 1776.296 kb on - strand, within ABZR87_RS08350at 1776.296 kb on - strand, within ABZR87_RS08350

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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1,773,452 + +0.2
1,773,523 + +0.4
1,773,524 - -0.2
1,773,529 + +0.9
1,773,529 + -1.0
1,773,530 - -0.6
1,773,677 + ABZR87_RS08340 0.15 -0.0
1,773,678 - ABZR87_RS08340 0.15 -0.5
1,773,678 - ABZR87_RS08340 0.15 +0.3
1,773,679 + ABZR87_RS08340 0.15 +0.3
1,773,679 + ABZR87_RS08340 0.15 -0.6
1,773,679 + ABZR87_RS08340 0.15 -0.5
1,773,680 - ABZR87_RS08340 0.15 -0.5
1,773,680 - ABZR87_RS08340 0.15 +0.5
1,773,680 - ABZR87_RS08340 0.15 -0.1
1,773,768 + ABZR87_RS08340 0.27 +0.0
1,773,931 + ABZR87_RS08340 0.47 +0.2
1,774,010 + ABZR87_RS08340 0.57 +0.0
1,774,010 + ABZR87_RS08340 0.57 -0.3
1,774,010 + ABZR87_RS08340 0.57 +0.1
1,774,010 + ABZR87_RS08340 0.57 -0.7
1,774,011 - ABZR87_RS08340 0.58 -0.2
1,774,011 - ABZR87_RS08340 0.58 +0.6
1,774,084 + ABZR87_RS08340 0.67 +0.1
1,774,118 + ABZR87_RS08340 0.71 -0.6
1,774,274 + +0.2
1,774,274 + -0.8
1,774,275 - +0.2
1,774,725 + ABZR87_RS08345 0.36 +0.1
1,774,725 + ABZR87_RS08345 0.36 +0.5
1,774,725 + ABZR87_RS08345 0.36 +0.7
1,774,726 - ABZR87_RS08345 0.36 -0.7
1,774,726 - ABZR87_RS08345 0.36 -0.0
1,774,726 - ABZR87_RS08345 0.36 +1.9
1,774,726 - ABZR87_RS08345 0.36 +1.3
1,774,726 - ABZR87_RS08345 0.36 +1.2
1,774,737 + ABZR87_RS08345 0.38 +0.0
1,774,901 + ABZR87_RS08345 0.56 +0.4
1,774,901 + ABZR87_RS08345 0.56 +0.6
1,774,901 + ABZR87_RS08345 0.56 +1.3
1,774,959 + ABZR87_RS08345 0.62 +0.2
1,774,986 + ABZR87_RS08345 0.65 -0.7
1,774,986 + ABZR87_RS08345 0.65 -0.1
1,774,987 - ABZR87_RS08345 0.65 -0.3
1,774,989 + ABZR87_RS08345 0.65 +1.0
1,774,989 + ABZR87_RS08345 0.65 -0.2
1,774,989 + ABZR87_RS08345 0.65 -0.2
1,775,352 + -0.1
1,775,352 + +0.3
1,775,353 - +0.7
1,775,353 - +0.2
1,775,353 - -0.4
1,775,627 + -0.0
1,775,627 + +0.3
1,775,627 + -0.0
1,775,628 - +0.6
1,775,748 + -0.1
1,775,749 - +1.2
1,775,834 + -0.9
1,775,834 + +1.2
1,776,069 + ABZR87_RS08350 0.16 +0.6
1,776,070 - ABZR87_RS08350 0.16 -0.4
1,776,070 - ABZR87_RS08350 0.16 -0.2
1,776,070 - ABZR87_RS08350 0.16 +0.1
1,776,166 - ABZR87_RS08350 0.24 +0.0
1,776,205 + ABZR87_RS08350 0.27 +0.4
1,776,205 + ABZR87_RS08350 0.27 +0.1
1,776,205 + ABZR87_RS08350 0.27 +0.3
1,776,205 + ABZR87_RS08350 0.27 +0.2
1,776,206 - ABZR87_RS08350 0.27 -0.4
1,776,206 - ABZR87_RS08350 0.27 -0.2
1,776,206 - ABZR87_RS08350 0.27 +0.7
1,776,206 - ABZR87_RS08350 0.27 -0.1
1,776,239 - ABZR87_RS08350 0.29 +0.0
1,776,262 + ABZR87_RS08350 0.31 +0.2
1,776,262 + ABZR87_RS08350 0.31 -1.0
1,776,262 + ABZR87_RS08350 0.31 +0.6
1,776,262 + ABZR87_RS08350 0.31 -0.9
1,776,262 + ABZR87_RS08350 0.31 -0.2
1,776,262 + ABZR87_RS08350 0.31 -1.7
1,776,263 - ABZR87_RS08350 0.31 +0.2
1,776,263 - ABZR87_RS08350 0.31 -1.5
1,776,263 - ABZR87_RS08350 0.31 +0.0
1,776,271 + ABZR87_RS08350 0.32 -0.9
1,776,271 + ABZR87_RS08350 0.32 -0.1
1,776,271 + ABZR87_RS08350 0.32 +0.9
1,776,272 - ABZR87_RS08350 0.32 +1.2
1,776,272 - ABZR87_RS08350 0.32 +0.3
1,776,272 - ABZR87_RS08350 0.32 +0.6
1,776,272 - ABZR87_RS08350 0.32 +0.2
1,776,296 - ABZR87_RS08350 0.34 +0.1
1,776,296 - ABZR87_RS08350 0.34 +0.2
1,776,296 - ABZR87_RS08350 0.34 +0.2
1,776,296 - ABZR87_RS08350 0.34 -1.4

Or see this region's nucleotide sequence