Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07705

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07700 and ABZR87_RS07705 are separated by 88 nucleotidesABZR87_RS07705 and ABZR87_RS07710 are separated by 31 nucleotidesABZR87_RS07710 and ABZR87_RS07715 overlap by 14 nucleotides ABZR87_RS07700: ABZR87_RS07700 - peptidylprolyl isomerase, at 1,632,927 to 1,634,429 _RS07700 ABZR87_RS07705: ABZR87_RS07705 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 1,634,518 to 1,635,534 _RS07705 ABZR87_RS07710: ABZR87_RS07710 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA, at 1,635,566 to 1,636,411 _RS07710 ABZR87_RS07715: ABZR87_RS07715 - DMT family transporter, at 1,636,398 to 1,637,303 _RS07715 Position (kb) 1634 1635 1636Strain fitness (log2 ratio) -2 -1 0 1at 1633.581 kb on + strand, within ABZR87_RS07700at 1633.602 kb on + strand, within ABZR87_RS07700at 1633.650 kb on + strand, within ABZR87_RS07700at 1633.651 kb on - strand, within ABZR87_RS07700at 1633.651 kb on - strand, within ABZR87_RS07700at 1633.927 kb on - strand, within ABZR87_RS07700at 1634.092 kb on - strand, within ABZR87_RS07700at 1634.320 kb on - strandat 1634.407 kb on - strandat 1634.427 kb on + strandat 1634.427 kb on + strandat 1634.427 kb on + strandat 1634.427 kb on + strandat 1634.427 kb on + strandat 1634.427 kb on + strandat 1634.427 kb on + strandat 1634.427 kb on + strandat 1634.428 kb on - strandat 1634.483 kb on - strandat 1634.712 kb on + strand, within ABZR87_RS07705at 1634.789 kb on - strand, within ABZR87_RS07705at 1635.144 kb on + strand, within ABZR87_RS07705at 1635.144 kb on + strand, within ABZR87_RS07705at 1635.280 kb on - strand, within ABZR87_RS07705at 1635.280 kb on - strand, within ABZR87_RS07705at 1635.331 kb on + strand, within ABZR87_RS07705at 1635.331 kb on + strand, within ABZR87_RS07705at 1635.332 kb on - strand, within ABZR87_RS07705at 1635.332 kb on - strand, within ABZR87_RS07705at 1635.332 kb on - strand, within ABZR87_RS07705at 1635.361 kb on + strand, within ABZR87_RS07705at 1635.911 kb on + strand, within ABZR87_RS07710at 1635.912 kb on - strand, within ABZR87_RS07710at 1635.912 kb on - strand, within ABZR87_RS07710at 1635.912 kb on - strand, within ABZR87_RS07710at 1635.912 kb on - strand, within ABZR87_RS07710at 1635.912 kb on - strand, within ABZR87_RS07710at 1635.912 kb on - strand, within ABZR87_RS07710at 1636.067 kb on + strand, within ABZR87_RS07710at 1636.067 kb on + strand, within ABZR87_RS07710at 1636.067 kb on + strand, within ABZR87_RS07710at 1636.068 kb on - strand, within ABZR87_RS07710at 1636.068 kb on - strand, within ABZR87_RS07710at 1636.070 kb on + strand, within ABZR87_RS07710at 1636.070 kb on + strand, within ABZR87_RS07710at 1636.070 kb on + strand, within ABZR87_RS07710at 1636.070 kb on + strand, within ABZR87_RS07710at 1636.070 kb on + strand, within ABZR87_RS07710at 1636.070 kb on + strand, within ABZR87_RS07710at 1636.070 kb on + strand, within ABZR87_RS07710at 1636.070 kb on + strand, within ABZR87_RS07710at 1636.071 kb on - strand, within ABZR87_RS07710at 1636.071 kb on - strand, within ABZR87_RS07710at 1636.071 kb on - strand, within ABZR87_RS07710at 1636.249 kb on + strand, within ABZR87_RS07710at 1636.250 kb on - strand, within ABZR87_RS07710at 1636.250 kb on - strand, within ABZR87_RS07710at 1636.250 kb on - strand, within ABZR87_RS07710at 1636.399 kb on + strandat 1636.400 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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1,633,581 + ABZR87_RS07700 0.44 -0.3
1,633,602 + ABZR87_RS07700 0.45 +0.3
1,633,650 + ABZR87_RS07700 0.48 +0.3
1,633,651 - ABZR87_RS07700 0.48 -2.1
1,633,651 - ABZR87_RS07700 0.48 -0.1
1,633,927 - ABZR87_RS07700 0.67 +1.1
1,634,092 - ABZR87_RS07700 0.78 +1.2
1,634,320 - +1.7
1,634,407 - +0.4
1,634,427 + +0.8
1,634,427 + -0.5
1,634,427 + +0.3
1,634,427 + -0.7
1,634,427 + +0.6
1,634,427 + +0.1
1,634,427 + +0.5
1,634,427 + -0.3
1,634,428 - +0.5
1,634,483 - +0.1
1,634,712 + ABZR87_RS07705 0.19 -1.7
1,634,789 - ABZR87_RS07705 0.27 -0.9
1,635,144 + ABZR87_RS07705 0.62 +0.4
1,635,144 + ABZR87_RS07705 0.62 +0.1
1,635,280 - ABZR87_RS07705 0.75 -0.7
1,635,280 - ABZR87_RS07705 0.75 -0.3
1,635,331 + ABZR87_RS07705 0.80 -1.2
1,635,331 + ABZR87_RS07705 0.80 -1.6
1,635,332 - ABZR87_RS07705 0.80 -0.7
1,635,332 - ABZR87_RS07705 0.80 -0.3
1,635,332 - ABZR87_RS07705 0.80 +1.5
1,635,361 + ABZR87_RS07705 0.83 -0.5
1,635,911 + ABZR87_RS07710 0.41 -0.2
1,635,912 - ABZR87_RS07710 0.41 +0.4
1,635,912 - ABZR87_RS07710 0.41 -0.4
1,635,912 - ABZR87_RS07710 0.41 -0.6
1,635,912 - ABZR87_RS07710 0.41 -0.0
1,635,912 - ABZR87_RS07710 0.41 +0.6
1,635,912 - ABZR87_RS07710 0.41 -0.0
1,636,067 + ABZR87_RS07710 0.59 +0.9
1,636,067 + ABZR87_RS07710 0.59 +0.7
1,636,067 + ABZR87_RS07710 0.59 -0.4
1,636,068 - ABZR87_RS07710 0.59 +0.1
1,636,068 - ABZR87_RS07710 0.59 +0.1
1,636,070 + ABZR87_RS07710 0.60 +0.2
1,636,070 + ABZR87_RS07710 0.60 +0.3
1,636,070 + ABZR87_RS07710 0.60 -1.3
1,636,070 + ABZR87_RS07710 0.60 -1.0
1,636,070 + ABZR87_RS07710 0.60 +1.5
1,636,070 + ABZR87_RS07710 0.60 +0.1
1,636,070 + ABZR87_RS07710 0.60 +0.1
1,636,070 + ABZR87_RS07710 0.60 -0.1
1,636,071 - ABZR87_RS07710 0.60 +0.1
1,636,071 - ABZR87_RS07710 0.60 -0.3
1,636,071 - ABZR87_RS07710 0.60 +1.0
1,636,249 + ABZR87_RS07710 0.81 -0.0
1,636,250 - ABZR87_RS07710 0.81 +0.1
1,636,250 - ABZR87_RS07710 0.81 +0.5
1,636,250 - ABZR87_RS07710 0.81 -0.3
1,636,399 + -0.7
1,636,400 - +0.7

Or see this region's nucleotide sequence