Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05025

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS05015 and ABZR87_RS05020 are separated by 42 nucleotidesABZR87_RS05020 and ABZR87_RS05025 are separated by 16 nucleotidesABZR87_RS05025 and ABZR87_RS05030 are separated by 239 nucleotides ABZR87_RS05015: ABZR87_RS05015 - penicillin-binding protein 2, at 1,055,510 to 1,057,912 _RS05015 ABZR87_RS05020: ABZR87_RS05020 - rod shape-determining protein MreD, at 1,057,955 to 1,058,467 _RS05020 ABZR87_RS05025: ABZR87_RS05025 - rod shape-determining protein MreC, at 1,058,484 to 1,059,530 _RS05025 ABZR87_RS05030: ABZR87_RS05030 - rod shape-determining protein, at 1,059,770 to 1,060,813 _RS05030 Position (kb) 1058 1059 1060Strain fitness (log2 ratio) -2 -1 0 1at 1057.666 kb on - strand, within ABZR87_RS05015at 1057.675 kb on - strandat 1057.675 kb on - strandat 1057.675 kb on - strandat 1057.773 kb on + strandat 1057.774 kb on - strandat 1057.930 kb on - strandat 1057.956 kb on + strandat 1057.957 kb on - strandat 1057.957 kb on - strandat 1058.205 kb on + strand, within ABZR87_RS05020at 1058.221 kb on - strand, within ABZR87_RS05020at 1058.451 kb on + strandat 1058.452 kb on - strandat 1058.452 kb on - strandat 1058.452 kb on - strandat 1058.452 kb on - strandat 1058.452 kb on - strandat 1059.125 kb on + strand, within ABZR87_RS05025at 1059.125 kb on + strand, within ABZR87_RS05025at 1059.128 kb on - strand, within ABZR87_RS05025at 1059.128 kb on - strand, within ABZR87_RS05025at 1059.146 kb on - strand, within ABZR87_RS05025at 1059.146 kb on - strand, within ABZR87_RS05025at 1059.203 kb on + strand, within ABZR87_RS05025at 1059.323 kb on - strand, within ABZR87_RS05025at 1059.772 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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1,057,666 - ABZR87_RS05015 0.90 +1.2
1,057,675 - -0.9
1,057,675 - -2.4
1,057,675 - -0.2
1,057,773 + -0.5
1,057,774 - -1.5
1,057,930 - +0.0
1,057,956 + +0.7
1,057,957 - -0.1
1,057,957 - -0.0
1,058,205 + ABZR87_RS05020 0.49 -1.0
1,058,221 - ABZR87_RS05020 0.52 +0.9
1,058,451 + +0.6
1,058,452 - +0.1
1,058,452 - +0.7
1,058,452 - -0.0
1,058,452 - -0.4
1,058,452 - +0.5
1,059,125 + ABZR87_RS05025 0.61 +0.5
1,059,125 + ABZR87_RS05025 0.61 -1.1
1,059,128 - ABZR87_RS05025 0.62 -2.2
1,059,128 - ABZR87_RS05025 0.62 -0.7
1,059,146 - ABZR87_RS05025 0.63 +1.1
1,059,146 - ABZR87_RS05025 0.63 -0.7
1,059,203 + ABZR87_RS05025 0.69 -0.5
1,059,323 - ABZR87_RS05025 0.80 +0.9
1,059,772 - +0.4

Or see this region's nucleotide sequence