Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS05015 and ABZR87_RS05020 are separated by 42 nucleotides ABZR87_RS05020 and ABZR87_RS05025 are separated by 16 nucleotides ABZR87_RS05025 and ABZR87_RS05030 are separated by 239 nucleotides
ABZR87_RS05015: ABZR87_RS05015 - penicillin-binding protein 2, at 1,055,510 to 1,057,912
_RS05015
ABZR87_RS05020: ABZR87_RS05020 - rod shape-determining protein MreD, at 1,057,955 to 1,058,467
_RS05020
ABZR87_RS05025: ABZR87_RS05025 - rod shape-determining protein MreC, at 1,058,484 to 1,059,530
_RS05025
ABZR87_RS05030: ABZR87_RS05030 - rod shape-determining protein, at 1,059,770 to 1,060,813
_RS05030
Position (kb)
1058
1059
1060 Strain fitness (log2 ratio)
-2
-1
0
1 at 1057.666 kb on - strand, within ABZR87_RS05015 at 1057.675 kb on - strand at 1057.675 kb on - strand at 1057.675 kb on - strand at 1057.773 kb on + strand at 1057.774 kb on - strand at 1057.930 kb on - strand at 1057.956 kb on + strand at 1057.957 kb on - strand at 1057.957 kb on - strand at 1058.205 kb on + strand, within ABZR87_RS05020 at 1058.221 kb on - strand, within ABZR87_RS05020 at 1058.451 kb on + strand at 1058.452 kb on - strand at 1058.452 kb on - strand at 1058.452 kb on - strand at 1058.452 kb on - strand at 1058.452 kb on - strand at 1059.125 kb on + strand, within ABZR87_RS05025 at 1059.125 kb on + strand, within ABZR87_RS05025 at 1059.128 kb on - strand, within ABZR87_RS05025 at 1059.128 kb on - strand, within ABZR87_RS05025 at 1059.146 kb on - strand, within ABZR87_RS05025 at 1059.146 kb on - strand, within ABZR87_RS05025 at 1059.203 kb on + strand, within ABZR87_RS05025 at 1059.323 kb on - strand, within ABZR87_RS05025 at 1059.772 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 1,057,666 - ABZR87_RS05015 0.90 +1.2 1,057,675 - -0.9 1,057,675 - -2.4 1,057,675 - -0.2 1,057,773 + -0.5 1,057,774 - -1.5 1,057,930 - +0.0 1,057,956 + +0.7 1,057,957 - -0.1 1,057,957 - -0.0 1,058,205 + ABZR87_RS05020 0.49 -1.0 1,058,221 - ABZR87_RS05020 0.52 +0.9 1,058,451 + +0.6 1,058,452 - +0.1 1,058,452 - +0.7 1,058,452 - -0.0 1,058,452 - -0.4 1,058,452 - +0.5 1,059,125 + ABZR87_RS05025 0.61 +0.5 1,059,125 + ABZR87_RS05025 0.61 -1.1 1,059,128 - ABZR87_RS05025 0.62 -2.2 1,059,128 - ABZR87_RS05025 0.62 -0.7 1,059,146 - ABZR87_RS05025 0.63 +1.1 1,059,146 - ABZR87_RS05025 0.63 -0.7 1,059,203 + ABZR87_RS05025 0.69 -0.5 1,059,323 - ABZR87_RS05025 0.80 +0.9 1,059,772 - +0.4
Or see this region's nucleotide sequence