Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01530

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01525 and ABZR87_RS01530 are separated by 25 nucleotidesABZR87_RS01530 and ABZR87_RS01535 are separated by 2 nucleotidesABZR87_RS01535 and ABZR87_RS01540 are separated by 53 nucleotides ABZR87_RS01525: ABZR87_RS01525 - MFS transporter, at 320,749 to 322,074 _RS01525 ABZR87_RS01530: ABZR87_RS01530 - dihydrodipicolinate synthase family protein, at 322,100 to 323,029 _RS01530 ABZR87_RS01535: ABZR87_RS01535 - Gfo/Idh/MocA family oxidoreductase, at 323,032 to 323,970 _RS01535 ABZR87_RS01540: ABZR87_RS01540 - arabinose ABC transporter substrate-binding protein, at 324,024 to 325,028 _RS01540 Position (kb) 322 323 324Strain fitness (log2 ratio) -1 0 1 2 3at 321.109 kb on + strand, within ABZR87_RS01525at 321.109 kb on + strand, within ABZR87_RS01525at 321.109 kb on + strand, within ABZR87_RS01525at 321.110 kb on - strand, within ABZR87_RS01525at 321.110 kb on - strand, within ABZR87_RS01525at 321.110 kb on - strand, within ABZR87_RS01525at 321.110 kb on - strand, within ABZR87_RS01525at 321.152 kb on - strand, within ABZR87_RS01525at 321.152 kb on - strand, within ABZR87_RS01525at 321.152 kb on - strand, within ABZR87_RS01525at 321.166 kb on + strand, within ABZR87_RS01525at 321.167 kb on - strand, within ABZR87_RS01525at 321.373 kb on - strand, within ABZR87_RS01525at 321.463 kb on + strand, within ABZR87_RS01525at 321.463 kb on + strand, within ABZR87_RS01525at 321.464 kb on - strand, within ABZR87_RS01525at 321.464 kb on - strand, within ABZR87_RS01525at 321.464 kb on - strand, within ABZR87_RS01525at 321.559 kb on + strand, within ABZR87_RS01525at 321.559 kb on + strand, within ABZR87_RS01525at 321.559 kb on + strand, within ABZR87_RS01525at 321.559 kb on + strand, within ABZR87_RS01525at 321.559 kb on + strand, within ABZR87_RS01525at 321.560 kb on - strand, within ABZR87_RS01525at 321.643 kb on + strand, within ABZR87_RS01525at 321.644 kb on - strand, within ABZR87_RS01525at 321.644 kb on - strand, within ABZR87_RS01525at 321.668 kb on - strand, within ABZR87_RS01525at 321.668 kb on - strand, within ABZR87_RS01525at 321.668 kb on - strand, within ABZR87_RS01525at 321.706 kb on + strand, within ABZR87_RS01525at 321.706 kb on + strand, within ABZR87_RS01525at 321.706 kb on + strand, within ABZR87_RS01525at 321.820 kb on + strand, within ABZR87_RS01525at 321.820 kb on + strand, within ABZR87_RS01525at 321.820 kb on + strand, within ABZR87_RS01525at 321.821 kb on - strand, within ABZR87_RS01525at 321.821 kb on - strand, within ABZR87_RS01525at 321.925 kb on + strand, within ABZR87_RS01525at 321.925 kb on + strand, within ABZR87_RS01525at 321.937 kb on + strand, within ABZR87_RS01525at 321.937 kb on + strand, within ABZR87_RS01525at 321.938 kb on - strand, within ABZR87_RS01525at 321.988 kb on + strandat 322.358 kb on + strand, within ABZR87_RS01530at 322.358 kb on + strand, within ABZR87_RS01530at 322.358 kb on + strand, within ABZR87_RS01530at 322.359 kb on - strand, within ABZR87_RS01530at 322.475 kb on + strand, within ABZR87_RS01530at 322.476 kb on - strand, within ABZR87_RS01530at 322.511 kb on - strand, within ABZR87_RS01530at 322.604 kb on + strand, within ABZR87_RS01530at 322.760 kb on + strand, within ABZR87_RS01530at 322.829 kb on + strand, within ABZR87_RS01530at 322.829 kb on + strand, within ABZR87_RS01530at 322.830 kb on - strand, within ABZR87_RS01530at 322.830 kb on - strand, within ABZR87_RS01530at 323.182 kb on + strand, within ABZR87_RS01535at 323.182 kb on + strand, within ABZR87_RS01535at 323.183 kb on - strand, within ABZR87_RS01535at 323.183 kb on - strand, within ABZR87_RS01535at 323.183 kb on - strand, within ABZR87_RS01535at 323.376 kb on + strand, within ABZR87_RS01535at 323.376 kb on + strand, within ABZR87_RS01535at 323.376 kb on + strand, within ABZR87_RS01535at 323.376 kb on + strand, within ABZR87_RS01535at 323.376 kb on + strand, within ABZR87_RS01535at 323.376 kb on + strand, within ABZR87_RS01535at 323.377 kb on - strand, within ABZR87_RS01535at 323.377 kb on - strand, within ABZR87_RS01535at 323.377 kb on - strand, within ABZR87_RS01535at 323.377 kb on - strand, within ABZR87_RS01535at 323.848 kb on + strand, within ABZR87_RS01535at 323.849 kb on - strand, within ABZR87_RS01535at 323.984 kb on + strandat 323.984 kb on + strandat 323.984 kb on + strandat 323.984 kb on + strandat 323.985 kb on - strandat 323.985 kb on - strandat 323.985 kb on - strandat 323.985 kb on - strandat 323.985 kb on - strandat 323.985 kb on - strandat 323.988 kb on + strandat 323.989 kb on - strandat 323.989 kb on - strandat 323.989 kb on - strandat 323.989 kb on - strandat 323.989 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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321,109 + ABZR87_RS01525 0.27 +0.8
321,109 + ABZR87_RS01525 0.27 +0.9
321,109 + ABZR87_RS01525 0.27 +1.5
321,110 - ABZR87_RS01525 0.27 +0.2
321,110 - ABZR87_RS01525 0.27 +1.0
321,110 - ABZR87_RS01525 0.27 +1.5
321,110 - ABZR87_RS01525 0.27 +0.3
321,152 - ABZR87_RS01525 0.30 +0.9
321,152 - ABZR87_RS01525 0.30 +0.9
321,152 - ABZR87_RS01525 0.30 +1.0
321,166 + ABZR87_RS01525 0.31 +1.4
321,167 - ABZR87_RS01525 0.32 -0.6
321,373 - ABZR87_RS01525 0.47 +1.2
321,463 + ABZR87_RS01525 0.54 +1.7
321,463 + ABZR87_RS01525 0.54 +0.5
321,464 - ABZR87_RS01525 0.54 +1.2
321,464 - ABZR87_RS01525 0.54 +0.7
321,464 - ABZR87_RS01525 0.54 -0.8
321,559 + ABZR87_RS01525 0.61 +1.4
321,559 + ABZR87_RS01525 0.61 +0.9
321,559 + ABZR87_RS01525 0.61 +1.6
321,559 + ABZR87_RS01525 0.61 +0.3
321,559 + ABZR87_RS01525 0.61 +1.8
321,560 - ABZR87_RS01525 0.61 -0.2
321,643 + ABZR87_RS01525 0.67 +1.0
321,644 - ABZR87_RS01525 0.67 +0.4
321,644 - ABZR87_RS01525 0.67 +0.1
321,668 - ABZR87_RS01525 0.69 +1.4
321,668 - ABZR87_RS01525 0.69 +1.3
321,668 - ABZR87_RS01525 0.69 +0.8
321,706 + ABZR87_RS01525 0.72 +1.7
321,706 + ABZR87_RS01525 0.72 +0.6
321,706 + ABZR87_RS01525 0.72 +1.0
321,820 + ABZR87_RS01525 0.81 +1.4
321,820 + ABZR87_RS01525 0.81 +0.9
321,820 + ABZR87_RS01525 0.81 +1.6
321,821 - ABZR87_RS01525 0.81 +0.7
321,821 - ABZR87_RS01525 0.81 +1.0
321,925 + ABZR87_RS01525 0.89 +0.6
321,925 + ABZR87_RS01525 0.89 +1.7
321,937 + ABZR87_RS01525 0.90 +1.5
321,937 + ABZR87_RS01525 0.90 +1.1
321,938 - ABZR87_RS01525 0.90 +0.9
321,988 + +0.9
322,358 + ABZR87_RS01530 0.28 +1.5
322,358 + ABZR87_RS01530 0.28 +1.2
322,358 + ABZR87_RS01530 0.28 +1.0
322,359 - ABZR87_RS01530 0.28 +0.9
322,475 + ABZR87_RS01530 0.40 +0.9
322,476 - ABZR87_RS01530 0.40 +2.1
322,511 - ABZR87_RS01530 0.44 +0.3
322,604 + ABZR87_RS01530 0.54 +0.9
322,760 + ABZR87_RS01530 0.71 +0.9
322,829 + ABZR87_RS01530 0.78 +1.3
322,829 + ABZR87_RS01530 0.78 +1.1
322,830 - ABZR87_RS01530 0.78 +1.2
322,830 - ABZR87_RS01530 0.78 +0.4
323,182 + ABZR87_RS01535 0.16 +1.7
323,182 + ABZR87_RS01535 0.16 +0.9
323,183 - ABZR87_RS01535 0.16 +0.2
323,183 - ABZR87_RS01535 0.16 +1.2
323,183 - ABZR87_RS01535 0.16 +0.7
323,376 + ABZR87_RS01535 0.37 +1.0
323,376 + ABZR87_RS01535 0.37 +1.2
323,376 + ABZR87_RS01535 0.37 +1.2
323,376 + ABZR87_RS01535 0.37 +1.6
323,376 + ABZR87_RS01535 0.37 +1.1
323,376 + ABZR87_RS01535 0.37 +1.0
323,377 - ABZR87_RS01535 0.37 +1.4
323,377 - ABZR87_RS01535 0.37 +0.4
323,377 - ABZR87_RS01535 0.37 +1.5
323,377 - ABZR87_RS01535 0.37 +1.7
323,848 + ABZR87_RS01535 0.87 +1.2
323,849 - ABZR87_RS01535 0.87 +1.2
323,984 + +0.8
323,984 + +0.7
323,984 + +1.2
323,984 + +0.8
323,985 - +1.2
323,985 - +1.4
323,985 - +0.5
323,985 - +1.1
323,985 - +0.6
323,985 - +0.8
323,988 + -0.0
323,989 - +1.6
323,989 - +0.6
323,989 - +3.2
323,989 - +1.2
323,989 - +1.2

Or see this region's nucleotide sequence