Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01495

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01490 and ABZR87_RS01495 are separated by 175 nucleotidesABZR87_RS01495 and ABZR87_RS01500 are separated by 77 nucleotidesABZR87_RS01500 and ABZR87_RS01505 are separated by 49 nucleotides ABZR87_RS01490: ABZR87_RS01490 - porin, at 313,637 to 314,713 _RS01490 ABZR87_RS01495: ABZR87_RS01495 - transcriptional regulator GcvA, at 314,889 to 315,815 _RS01495 ABZR87_RS01500: ABZR87_RS01500 - glyoxalase/bleomycin resistance/extradiol dioxygenase family protein, at 315,893 to 316,312 _RS01500 ABZR87_RS01505: ABZR87_RS01505 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 316,362 to 317,111 _RS01505 Position (kb) 314 315 316Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 313.965 kb on - strand, within ABZR87_RS01490at 314.604 kb on + strand, within ABZR87_RS01490at 314.604 kb on + strand, within ABZR87_RS01490at 314.604 kb on + strand, within ABZR87_RS01490at 314.737 kb on - strandat 314.737 kb on - strandat 314.817 kb on + strandat 314.817 kb on + strandat 314.818 kb on - strandat 314.913 kb on - strandat 314.913 kb on - strandat 315.093 kb on + strand, within ABZR87_RS01495at 315.093 kb on + strand, within ABZR87_RS01495at 315.093 kb on + strand, within ABZR87_RS01495at 315.093 kb on + strand, within ABZR87_RS01495at 315.094 kb on - strand, within ABZR87_RS01495at 315.094 kb on - strand, within ABZR87_RS01495at 315.094 kb on - strand, within ABZR87_RS01495at 315.094 kb on - strand, within ABZR87_RS01495at 315.094 kb on - strand, within ABZR87_RS01495at 315.094 kb on - strand, within ABZR87_RS01495at 315.094 kb on - strand, within ABZR87_RS01495at 315.094 kb on - strand, within ABZR87_RS01495at 315.094 kb on - strand, within ABZR87_RS01495at 315.226 kb on - strand, within ABZR87_RS01495at 315.520 kb on + strand, within ABZR87_RS01495at 315.621 kb on + strand, within ABZR87_RS01495at 315.621 kb on + strand, within ABZR87_RS01495at 315.621 kb on + strand, within ABZR87_RS01495at 315.621 kb on + strand, within ABZR87_RS01495at 315.622 kb on - strand, within ABZR87_RS01495at 315.622 kb on - strand, within ABZR87_RS01495at 315.622 kb on - strand, within ABZR87_RS01495at 315.684 kb on + strand, within ABZR87_RS01495at 315.684 kb on + strand, within ABZR87_RS01495at 315.685 kb on - strand, within ABZR87_RS01495at 315.688 kb on - strand, within ABZR87_RS01495at 315.688 kb on - strand, within ABZR87_RS01495at 315.847 kb on + strandat 315.848 kb on - strandat 315.848 kb on - strandat 315.848 kb on - strandat 315.852 kb on + strandat 315.852 kb on + strandat 315.852 kb on + strandat 315.852 kb on + strandat 315.852 kb on + strandat 315.853 kb on - strandat 315.853 kb on - strandat 315.853 kb on - strandat 315.853 kb on - strandat 315.853 kb on - strandat 315.974 kb on + strand, within ABZR87_RS01500at 315.974 kb on + strand, within ABZR87_RS01500at 315.975 kb on - strand, within ABZR87_RS01500at 315.975 kb on - strand, within ABZR87_RS01500at 316.049 kb on + strand, within ABZR87_RS01500at 316.049 kb on + strand, within ABZR87_RS01500at 316.049 kb on + strand, within ABZR87_RS01500at 316.050 kb on - strand, within ABZR87_RS01500at 316.155 kb on - strand, within ABZR87_RS01500at 316.155 kb on - strand, within ABZR87_RS01500at 316.155 kb on - strand, within ABZR87_RS01500at 316.178 kb on + strand, within ABZR87_RS01500at 316.179 kb on - strand, within ABZR87_RS01500at 316.179 kb on - strand, within ABZR87_RS01500at 316.274 kb on + strandat 316.360 kb on + strandat 316.361 kb on - strandat 316.669 kb on + strand, within ABZR87_RS01505at 316.669 kb on + strand, within ABZR87_RS01505at 316.669 kb on + strand, within ABZR87_RS01505at 316.669 kb on + strand, within ABZR87_RS01505at 316.669 kb on + strand, within ABZR87_RS01505at 316.670 kb on - strand, within ABZR87_RS01505

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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313,965 - ABZR87_RS01490 0.30 -4.1
314,604 + ABZR87_RS01490 0.90 -3.9
314,604 + ABZR87_RS01490 0.90 -2.4
314,604 + ABZR87_RS01490 0.90 -4.0
314,737 - -1.1
314,737 - -1.6
314,817 + -2.1
314,817 + -2.3
314,818 - -3.3
314,913 - -2.5
314,913 - -2.6
315,093 + ABZR87_RS01495 0.22 -2.5
315,093 + ABZR87_RS01495 0.22 -2.8
315,093 + ABZR87_RS01495 0.22 -4.3
315,093 + ABZR87_RS01495 0.22 -3.1
315,094 - ABZR87_RS01495 0.22 -3.8
315,094 - ABZR87_RS01495 0.22 -3.9
315,094 - ABZR87_RS01495 0.22 -3.5
315,094 - ABZR87_RS01495 0.22 -4.2
315,094 - ABZR87_RS01495 0.22 -2.4
315,094 - ABZR87_RS01495 0.22 -3.2
315,094 - ABZR87_RS01495 0.22 -3.7
315,094 - ABZR87_RS01495 0.22 -3.7
315,094 - ABZR87_RS01495 0.22 -2.2
315,226 - ABZR87_RS01495 0.36 -3.2
315,520 + ABZR87_RS01495 0.68 -2.6
315,621 + ABZR87_RS01495 0.79 -4.0
315,621 + ABZR87_RS01495 0.79 -3.7
315,621 + ABZR87_RS01495 0.79 -2.4
315,621 + ABZR87_RS01495 0.79 -2.6
315,622 - ABZR87_RS01495 0.79 -3.7
315,622 - ABZR87_RS01495 0.79 -3.9
315,622 - ABZR87_RS01495 0.79 -3.8
315,684 + ABZR87_RS01495 0.86 -4.1
315,684 + ABZR87_RS01495 0.86 -3.2
315,685 - ABZR87_RS01495 0.86 -2.6
315,688 - ABZR87_RS01495 0.86 -2.7
315,688 - ABZR87_RS01495 0.86 -3.1
315,847 + +1.4
315,848 - -0.4
315,848 - -0.9
315,848 - -0.7
315,852 + +0.8
315,852 + +1.0
315,852 + +0.4
315,852 + +0.4
315,852 + +0.6
315,853 - -1.0
315,853 - -0.9
315,853 - -0.8
315,853 - -0.1
315,853 - -1.0
315,974 + ABZR87_RS01500 0.19 +0.8
315,974 + ABZR87_RS01500 0.19 +0.5
315,975 - ABZR87_RS01500 0.20 -0.2
315,975 - ABZR87_RS01500 0.20 -1.2
316,049 + ABZR87_RS01500 0.37 +0.5
316,049 + ABZR87_RS01500 0.37 -0.1
316,049 + ABZR87_RS01500 0.37 -0.4
316,050 - ABZR87_RS01500 0.37 -0.9
316,155 - ABZR87_RS01500 0.62 -0.4
316,155 - ABZR87_RS01500 0.62 -1.7
316,155 - ABZR87_RS01500 0.62 -0.3
316,178 + ABZR87_RS01500 0.68 +0.0
316,179 - ABZR87_RS01500 0.68 -0.5
316,179 - ABZR87_RS01500 0.68 -0.1
316,274 + +0.9
316,360 + -0.6
316,361 - -0.8
316,669 + ABZR87_RS01505 0.41 +0.6
316,669 + ABZR87_RS01505 0.41 +0.2
316,669 + ABZR87_RS01505 0.41 -0.8
316,669 + ABZR87_RS01505 0.41 +1.8
316,669 + ABZR87_RS01505 0.41 -0.3
316,670 - ABZR87_RS01505 0.41 -2.3

Or see this region's nucleotide sequence