Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01450

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01445 and ABZR87_RS01450 are separated by 20 nucleotidesABZR87_RS01450 and ABZR87_RS01455 overlap by 4 nucleotidesABZR87_RS01455 and ABZR87_RS01460 overlap by 4 nucleotides ABZR87_RS01445: ABZR87_RS01445 - galactonate dehydratase, at 304,406 to 305,554 _RS01445 ABZR87_RS01450: ABZR87_RS01450 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 305,575 to 306,201 _RS01450 ABZR87_RS01455: ABZR87_RS01455 - SDR family oxidoreductase, at 306,198 to 307,004 _RS01455 ABZR87_RS01460: ABZR87_RS01460 - aldose 1-epimerase, at 307,001 to 307,885 _RS01460 Position (kb) 305 306 307Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 304.578 kb on + strand, within ABZR87_RS01445at 304.578 kb on + strand, within ABZR87_RS01445at 304.578 kb on + strand, within ABZR87_RS01445at 304.578 kb on + strand, within ABZR87_RS01445at 304.579 kb on - strand, within ABZR87_RS01445at 304.579 kb on - strand, within ABZR87_RS01445at 304.579 kb on - strand, within ABZR87_RS01445at 304.579 kb on - strand, within ABZR87_RS01445at 304.579 kb on - strand, within ABZR87_RS01445at 304.605 kb on + strand, within ABZR87_RS01445at 304.605 kb on + strand, within ABZR87_RS01445at 304.606 kb on - strand, within ABZR87_RS01445at 304.606 kb on - strand, within ABZR87_RS01445at 304.606 kb on - strand, within ABZR87_RS01445at 304.606 kb on - strand, within ABZR87_RS01445at 304.722 kb on + strand, within ABZR87_RS01445at 304.723 kb on - strand, within ABZR87_RS01445at 304.723 kb on - strand, within ABZR87_RS01445at 304.896 kb on + strand, within ABZR87_RS01445at 304.896 kb on + strand, within ABZR87_RS01445at 304.896 kb on + strand, within ABZR87_RS01445at 304.896 kb on + strand, within ABZR87_RS01445at 304.897 kb on - strand, within ABZR87_RS01445at 304.897 kb on - strand, within ABZR87_RS01445at 304.934 kb on - strand, within ABZR87_RS01445at 305.205 kb on + strand, within ABZR87_RS01445at 305.205 kb on + strand, within ABZR87_RS01445at 305.205 kb on + strand, within ABZR87_RS01445at 305.205 kb on + strand, within ABZR87_RS01445at 305.206 kb on - strand, within ABZR87_RS01445at 305.206 kb on - strand, within ABZR87_RS01445at 305.206 kb on - strand, within ABZR87_RS01445at 305.248 kb on - strand, within ABZR87_RS01445at 305.338 kb on - strand, within ABZR87_RS01445at 305.352 kb on + strand, within ABZR87_RS01445at 305.352 kb on + strand, within ABZR87_RS01445at 305.353 kb on - strand, within ABZR87_RS01445at 305.353 kb on - strand, within ABZR87_RS01445at 305.353 kb on - strand, within ABZR87_RS01445at 305.353 kb on - strand, within ABZR87_RS01445at 305.403 kb on + strand, within ABZR87_RS01445at 305.404 kb on - strand, within ABZR87_RS01445at 305.404 kb on - strand, within ABZR87_RS01445at 305.529 kb on + strandat 305.529 kb on + strandat 305.529 kb on + strandat 305.530 kb on - strandat 305.530 kb on - strandat 305.603 kb on + strandat 305.664 kb on - strand, within ABZR87_RS01450at 305.664 kb on - strand, within ABZR87_RS01450at 305.709 kb on - strand, within ABZR87_RS01450at 305.793 kb on - strand, within ABZR87_RS01450at 306.209 kb on - strandat 306.293 kb on - strand, within ABZR87_RS01455at 306.293 kb on - strand, within ABZR87_RS01455at 306.454 kb on + strand, within ABZR87_RS01455at 306.455 kb on - strand, within ABZR87_RS01455at 306.457 kb on + strand, within ABZR87_RS01455at 307.032 kb on + strandat 307.033 kb on - strandat 307.164 kb on + strand, within ABZR87_RS01460at 307.164 kb on + strand, within ABZR87_RS01460at 307.164 kb on + strand, within ABZR87_RS01460at 307.165 kb on - strand, within ABZR87_RS01460at 307.165 kb on - strand, within ABZR87_RS01460at 307.165 kb on - strand, within ABZR87_RS01460at 307.165 kb on - strand, within ABZR87_RS01460at 307.165 kb on - strand, within ABZR87_RS01460at 307.174 kb on - strand, within ABZR87_RS01460at 307.174 kb on - strand, within ABZR87_RS01460at 307.174 kb on - strand, within ABZR87_RS01460

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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304,578 + ABZR87_RS01445 0.15 -2.0
304,578 + ABZR87_RS01445 0.15 -0.5
304,578 + ABZR87_RS01445 0.15 -1.3
304,578 + ABZR87_RS01445 0.15 -3.7
304,579 - ABZR87_RS01445 0.15 -5.0
304,579 - ABZR87_RS01445 0.15 -4.2
304,579 - ABZR87_RS01445 0.15 -4.2
304,579 - ABZR87_RS01445 0.15 -3.4
304,579 - ABZR87_RS01445 0.15 -4.1
304,605 + ABZR87_RS01445 0.17 -2.1
304,605 + ABZR87_RS01445 0.17 -3.3
304,606 - ABZR87_RS01445 0.17 -3.2
304,606 - ABZR87_RS01445 0.17 -3.9
304,606 - ABZR87_RS01445 0.17 -4.3
304,606 - ABZR87_RS01445 0.17 -2.9
304,722 + ABZR87_RS01445 0.28 -2.7
304,723 - ABZR87_RS01445 0.28 -2.4
304,723 - ABZR87_RS01445 0.28 -0.4
304,896 + ABZR87_RS01445 0.43 -2.2
304,896 + ABZR87_RS01445 0.43 -2.8
304,896 + ABZR87_RS01445 0.43 -3.7
304,896 + ABZR87_RS01445 0.43 -4.2
304,897 - ABZR87_RS01445 0.43 -2.6
304,897 - ABZR87_RS01445 0.43 -2.6
304,934 - ABZR87_RS01445 0.46 -4.5
305,205 + ABZR87_RS01445 0.70 -3.8
305,205 + ABZR87_RS01445 0.70 -5.3
305,205 + ABZR87_RS01445 0.70 -1.2
305,205 + ABZR87_RS01445 0.70 -2.4
305,206 - ABZR87_RS01445 0.70 -2.7
305,206 - ABZR87_RS01445 0.70 +1.0
305,206 - ABZR87_RS01445 0.70 -2.7
305,248 - ABZR87_RS01445 0.73 -3.2
305,338 - ABZR87_RS01445 0.81 -2.5
305,352 + ABZR87_RS01445 0.82 -3.3
305,352 + ABZR87_RS01445 0.82 -2.9
305,353 - ABZR87_RS01445 0.82 -3.7
305,353 - ABZR87_RS01445 0.82 -4.2
305,353 - ABZR87_RS01445 0.82 -3.1
305,353 - ABZR87_RS01445 0.82 -2.1
305,403 + ABZR87_RS01445 0.87 -2.9
305,404 - ABZR87_RS01445 0.87 -3.9
305,404 - ABZR87_RS01445 0.87 -1.1
305,529 + -3.4
305,529 + -3.0
305,529 + -3.5
305,530 - -2.6
305,530 - -3.3
305,603 + -3.3
305,664 - ABZR87_RS01450 0.14 -4.4
305,664 - ABZR87_RS01450 0.14 -3.3
305,709 - ABZR87_RS01450 0.21 -4.9
305,793 - ABZR87_RS01450 0.35 -3.1
306,209 - -1.5
306,293 - ABZR87_RS01455 0.12 -1.1
306,293 - ABZR87_RS01455 0.12 -1.1
306,454 + ABZR87_RS01455 0.32 -3.9
306,455 - ABZR87_RS01455 0.32 -0.6
306,457 + ABZR87_RS01455 0.32 -4.4
307,032 + -3.5
307,033 - -0.1
307,164 + ABZR87_RS01460 0.18 -4.1
307,164 + ABZR87_RS01460 0.18 -3.8
307,164 + ABZR87_RS01460 0.18 -1.8
307,165 - ABZR87_RS01460 0.19 +0.9
307,165 - ABZR87_RS01460 0.19 +0.9
307,165 - ABZR87_RS01460 0.19 +0.7
307,165 - ABZR87_RS01460 0.19 +0.1
307,165 - ABZR87_RS01460 0.19 -0.9
307,174 - ABZR87_RS01460 0.20 +1.0
307,174 - ABZR87_RS01460 0.20 +0.5
307,174 - ABZR87_RS01460 0.20 +1.0

Or see this region's nucleotide sequence